Repeat Table

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Repeat Table for Human Herpesvirus 8 BC-1

The tandem repeats listed in the table were identified using the Tandem Repeat Finder by G. Genson
"Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acids Research (1999) Vol. 27, No. 2, pp. 573-580.

Repeat Name Copy # Location Length Gene & Intergenic Id(s) Definitions-Comments
csmc 2.00 51377,51899
147603,148119 523 IGR12.1, IGR54 522 nt inverted repeat, INV1, at 51377-51899 matches 100% reverse compliment with 147603-148119. tandem repeats, named frnk, 52526-52857, period 20, copy # 16.6, 100% matches, no insert/deletes, score 664 and 52852-53143, copy # 9.7, period 30, 100% matches, no insert/deletes, score 584.
intergenic region [Two tandem repeats, named zppa, from 146364-146671 with period 23, 100% matches, no inserts/deletes, score 616 and from 146672-146842, period 23, 100% matches, no inserts/deletes, score 342. 522 nt inverted repeat, INV1, at 147603-148119, matches 100% reverse compliment with 51377-51899.]
dbris1 2.00 51984,52133
147334,147483 150 IGR12.1, IGR54 522 nt inverted repeat, INV1, at 51377-51899 matches 100% reverse compliment with 147603-148119. tandem repeats, named frnk, 52526-52857, period 20, copy # 16.6, 100% matches, no insert/deletes, score 664 and 52852-53143, copy # 9.7, period 30, 100% matches, no insert/deletes, score 584.
intergenic region [Two tandem repeats, named zppa, from 146364-146671 with period 23, 100% matches, no inserts/deletes, score 616 and from 146672-146842, period 23, 100% matches, no inserts/deletes, score 342. 522 nt inverted repeat, INV1, at 147603-148119, matches 100% reverse compliment with 51377-51899.]
dbris2 2.00 52075,52146
147321,147392 150 IGR12.1, IGR54 522 nt inverted repeat, INV1, at 51377-51899 matches 100% reverse compliment with 147603-148119. tandem repeats, named frnk, 52526-52857, period 20, copy # 16.6, 100% matches, no insert/deletes, score 664 and 52852-53143, copy # 9.7, period 30, 100% matches, no insert/deletes, score 584.
intergenic region [Two tandem repeats, named zppa, from 146364-146671 with period 23, 100% matches, no inserts/deletes, score 616 and from 146672-146842, period 23, 100% matches, no inserts/deletes, score 342. 522 nt inverted repeat, INV1, at 147603-148119, matches 100% reverse compliment with 51377-51899.]
dbris3 2.00 52245,52302
147142,147199 58 IGR12.1, IGR54 522 nt inverted repeat, INV1, at 51377-51899 matches 100% reverse compliment with 147603-148119. tandem repeats, named frnk, 52526-52857, period 20, copy # 16.6, 100% matches, no insert/deletes, score 664 and 52852-53143, copy # 9.7, period 30, 100% matches, no insert/deletes, score 584.
intergenic region [Two tandem repeats, named zppa, from 146364-146671 with period 23, 100% matches, no inserts/deletes, score 616 and from 146672-146842, period 23, 100% matches, no inserts/deletes, score 342. 522 nt inverted repeat, INV1, at 147603-148119, matches 100% reverse compliment with 51377-51899.]

Los Alamos National Laboratory • Est 1943

Repeat Name	Copy #	Location	Length	Gene & Intergenic Id(s)	Definitions-Comments
csmc	2.00	51377,51899 147603,148119	523	IGR12.1, IGR54	522 nt inverted repeat, INV1, at 51377-51899 matches 100% reverse compliment with 147603-148119. tandem repeats, named frnk, 52526-52857, period 20, copy # 16.6, 100% matches, no insert/deletes, score 664 and 52852-53143, copy # 9.7, period 30, 100% matches, no insert/deletes, score 584. intergenic region [Two tandem repeats, named zppa, from 146364-146671 with period 23, 100% matches, no inserts/deletes, score 616 and from 146672-146842, period 23, 100% matches, no inserts/deletes, score 342. 522 nt inverted repeat, INV1, at 147603-148119, matches 100% reverse compliment with 51377-51899.]
dbris1	2.00	51984,52133 147334,147483	150	IGR12.1, IGR54	522 nt inverted repeat, INV1, at 51377-51899 matches 100% reverse compliment with 147603-148119. tandem repeats, named frnk, 52526-52857, period 20, copy # 16.6, 100% matches, no insert/deletes, score 664 and 52852-53143, copy # 9.7, period 30, 100% matches, no insert/deletes, score 584. intergenic region [Two tandem repeats, named zppa, from 146364-146671 with period 23, 100% matches, no inserts/deletes, score 616 and from 146672-146842, period 23, 100% matches, no inserts/deletes, score 342. 522 nt inverted repeat, INV1, at 147603-148119, matches 100% reverse compliment with 51377-51899.]
dbris2	2.00	52075,52146 147321,147392	150	IGR12.1, IGR54	522 nt inverted repeat, INV1, at 51377-51899 matches 100% reverse compliment with 147603-148119. tandem repeats, named frnk, 52526-52857, period 20, copy # 16.6, 100% matches, no insert/deletes, score 664 and 52852-53143, copy # 9.7, period 30, 100% matches, no insert/deletes, score 584. intergenic region [Two tandem repeats, named zppa, from 146364-146671 with period 23, 100% matches, no inserts/deletes, score 616 and from 146672-146842, period 23, 100% matches, no inserts/deletes, score 342. 522 nt inverted repeat, INV1, at 147603-148119, matches 100% reverse compliment with 51377-51899.]
dbris3	2.00	52245,52302 147142,147199	58	IGR12.1, IGR54	522 nt inverted repeat, INV1, at 51377-51899 matches 100% reverse compliment with 147603-148119. tandem repeats, named frnk, 52526-52857, period 20, copy # 16.6, 100% matches, no insert/deletes, score 664 and 52852-53143, copy # 9.7, period 30, 100% matches, no insert/deletes, score 584. intergenic region [Two tandem repeats, named zppa, from 146364-146671 with period 23, 100% matches, no inserts/deletes, score 616 and from 146672-146842, period 23, 100% matches, no inserts/deletes, score 342. 522 nt inverted repeat, INV1, at 147603-148119, matches 100% reverse compliment with 51377-51899.]