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Repeat Table for Pseudorabies virus Kaplan+

The tandem repeats listed in the table were identified using the Tandem Repeat Finder by G. Genson
"Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acids Research (1999) Vol. 27, No. 2, pp. 573-580.
Repeat Name Copy # Location Length Gene & Intergenic Id(s) Definitions-Comments
78  2.00 114430,114472
114710,114752
43 IGR40, IGR40  intergenic region 
79  2.00 129752,129809
130033,130090
58 IGR49, IGR49  intergenic region 
80  2.00 114600,114643
114881,114924
44 IGR40, IGR40  intergenic region 
81  2.00 114668,114747
114947,115026
80 IGR40, IGR40  intergenic region 
82  2.00 114491,114536
115051,115096
46 IGR40, IGR40  intergenic region 
83  2.00 114549,114598
115109,115158
50 IGR40, IGR40  intergenic region 
84  2.00 114512,114569
114793,114850
58 IGR40, IGR40  intergenic region 
85  2.00 507,547
591,631
41    
86  2.00 129506,129551
130066,130111
46 IGR49, IGR49  intergenic region 
87  2.00 120218,120267
120329,120378
50 PRV069 , PRV069   virion glycoprotein G, gG
virion glycoprotein G, gG 
88  2.00 129850,129892
130130,130172
43 IGR49, IGR49  intergenic region 
89  2.00 129444,129493
130004,130053
50 IGR49, IGR49  intergenic region 
90  2.00 129678,129721
129959,130002
44 IGR49, IGR49  intergenic region 
91  2.00 129576,129655
129855,129934
80 IGR49, IGR49  intergenic region 
92  2.00 102762,102781
102792,102811
20 PRV064 , PRV064   hypothetical
hypothetical 
93  2.00 141791,141810
141821,141840
20 PRV077 , PRV077   hypothetical
hypothetical 
94  2.00 12972,12991
49307,49326
20 PRV011 , PRV026   tegument protein
ribonucleoside-diphosphate reductase small subunit cellular homolog, RR2 
95  2.00 103314,103333
141269,141288
20 PRV064 , PRV065 , PRV076 , PRV077   hypothetical
gene regulator, immediate-early protein
gene regulator, immediate-early protein
hypothetical 
96  2.00 24233,24252
36663,36682
20 PRV015 , PRV022   single-stranded DNA binding protein, ICP8 homolog
very large tegument protein, VP1/2 
97  2.00 31949,31968
82769,82788
20 PRV020 , PRV048   membrane-associated primary virion protein
sequence specific ori-binding protein, OBP 
98  2.00 33333,33352
58567,58586
20 PRV022 , PRV033   very large tegument protein, VP1/2
capsid-associated protein 
99  2.00 12109,12128
122997,123016
20 PRV011 , PRV071   tegument protein
glycoprotein I, gI 
100  2.00 116889,116908
116907,116926
20 PRV066 , PRV066   gene regulator, immediate-early protein
gene regulator, immediate-early protein 
101  5.00 106331,106350
106340,106359
106349,106368
116760,116779
116937,116956
20 PRV064 , PRV065 , PRV064 , PRV065 , PRV064 , PRV065 , PRV066 , PRV066   hypothetical
gene regulator, immediate-early protein
hypothetical
gene regulator, immediate-early protein
hypothetical
gene regulator, immediate-early protein
gene regulator, immediate-early protein
gene regulator, immediate-early protein 
102  2.00 92687,92706
92759,92778
20 PRV056 , PRV056   membrane-associated protein
membrane-associated protein 
103  2.00 114311,114330
130272,130291
20 IGR40, IGR49  intergenic region 
104  5.00 127646,127665
127823,127842
138234,138253
138243,138262
138252,138271
20 PRV075 , PRV075 , PRV076 , PRV077 , PRV076 , PRV077 , PRV076 , PRV077   gene regulator, immediate-early protein
gene regulator, immediate-early protein
gene regulator, immediate-early protein
hypothetical
gene regulator, immediate-early protein
hypothetical
gene regulator, immediate-early protein
hypothetical 
105  2.00 127676,127695
127694,127713
20 PRV075 , PRV075   gene regulator, immediate-early protein
gene regulator, immediate-early protein 
106  2.00 129473,129493
129752,129772
21 IGR49, IGR49  intergenic region 
107  2.00 85381,85401
85855,85875
21 PRV051 , PRV051   DNA helicase/primase complex protein
DNA helicase/primase complex protein 
108  2.00 114830,114850
115109,115129
21 IGR40, IGR40  intergenic region 
109  2.00 92708,92729
92780,92801
22 PRV056 , PRV056   membrane-associated protein
membrane-associated protein 
110  4.00 32771,32792
32828,32849
32846,32867
32865,32886
22 IGR13, IGR13, IGR13, IGR13  intergenic region 
111  2.00 33327,33348
38274,38295
22 PRV022 , PRV022   very large tegument protein, VP1/2
very large tegument protein, VP1/2 
112  2.00 102423,102445
102451,102473
23 PRV061 , PRV064 , PRV061 , PRV064   hypothetical
hypothetical
hypothetical
hypothetical 
113  2.00 58573,58595
58600,58622
23 PRV033 , PRV033   capsid-associated protein
capsid-associated protein 
114  2.00 142129,142151
142157,142179
23 PRV077 , PRV077   hypothetical
hypothetical 
115  2.00 35053,35076
35095,35118
24 PRV022 , PRV022   very large tegument protein, VP1/2
very large tegument protein, VP1/2 
116  2.00 114793,114817
115072,115096
25 IGR40, IGR40  intergenic region 
117  2.00 129506,129530
129785,129809
25 IGR49, IGR49  intergenic region 
118  2.00 127818,127842
138238,138262
25 PRV075 , PRV076 , PRV077   gene regulator, immediate-early protein
gene regulator, immediate-early protein
hypothetical 
119  2.00 106340,106364
116760,116784
25 PRV064 , PRV065 , PRV066   hypothetical
gene regulator, immediate-early protein
gene regulator, immediate-early protein 
120  2.00 100943,100967
100976,101000
25 PRV061 , IGR39, PRV061 , IGR39  hypothetical
hypothetical
intergenic region 
121  2.00 584,608
632,656
25    
122  2.00 129919,129944
130199,130224
26 IGR49, IGR49  intergenic region 
123  2.00 106330,106355
116759,116784
26 PRV064 , PRV065 , PRV066   hypothetical
gene regulator, immediate-early protein
gene regulator, immediate-early protein 
124  2.00 127818,127843
138247,138272
26 PRV075 , PRV076 , PRV077   gene regulator, immediate-early protein
gene regulator, immediate-early protein
hypothetical 
125  2.00 114378,114403
114658,114683
26 IGR40, IGR40  intergenic region 
126  2.00 541,567
630,656
27    
127  2.00 101212,101240
101330,101358
29 PRV061 , IGR39, PRV061 , IGR39  hypothetical
hypothetical
intergenic region 
128  2.00 143244,143272
143362,143390
29    
129  2.00 102398,102427
102525,102554
30 PRV061 , PRV064 , PRV064   hypothetical
hypothetical
hypothetical 
130  2.00 142048,142077
142175,142204
30 PRV077 , PRV077   hypothetical
hypothetical 
131  2.00 35720,35751
35777,35808
32 PRV022 , PRV022   very large tegument protein, VP1/2
very large tegument protein, VP1/2 
132  2.00 102398,102430
102474,102506
33 PRV061 , PRV064 , PRV064   hypothetical
hypothetical
hypothetical 
133  2.00 142096,142128
142172,142204
33 PRV077 , PRV077   hypothetical
hypothetical 
134  2.00 102469,102503
102520,102554
35 PRV064 , PRV064   hypothetical
hypothetical 
135  2.00 142048,142082
142099,142133
35 PRV077 , PRV077   hypothetical
hypothetical 


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