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Repeat Table for Pseudorabies virus Kaplan+

The tandem repeats listed in the table were identified using the Tandem Repeat Finder by G. Genson
"Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acids Research (1999) Vol. 27, No. 2, pp. 573-580.
Repeat Name Copy # Location Length Gene & Intergenic Id(s) Definitions-Comments
136  2.00 101141,117942
126660,143461
16802 PRV061 , PRV064 , PRV065 , PRV066 , IGR39, IGR40, IGR41, PRV075 , PRV076 , PRV077 , IGR48, IGR49  hypothetical
hypothetical
gene regulator, immediate-early protein
gene regulator, immediate-early protein
gene regulator, immediate-early protein
gene regulator, immediate-early protein
hypothetical
intergenic region
intergenic region 
137  2.00 3,84
442,523
82    
138  5.00 63884,63924
114707,114747
114986,115026
129576,129616
129855,129895
41 IGR26, IGR40, IGR40, IGR49, IGR49  intergenic region 
139  3.00 98001,98020
102342,102361
142241,142260
20 PRV061 , IGR39, PRV061 , PRV064 , PRV077   hypothetical
hypothetical
hypothetical
hypothetical 
140  4.00 9946,9965
9949,9968
102338,102357
142245,142264
20 PRV009 , PRV009 , PRV061 , PRV064 , PRV077   tegument protein, VP22 homolog
tegument protein, VP22 homolog
hypothetical
hypothetical
hypothetical 
141  2.00 38421,38440
52331,52350
20 PRV022 , PRV028   very large tegument protein, VP1/2
DNA polymerase accessory protein 
142  3.00 84863,84882
106354,106373
138229,138248
20 PRV051 , PRV064 , PRV065 , PRV076 , PRV077   DNA helicase/primase complex protein
hypothetical
gene regulator, immediate-early protein
gene regulator, immediate-early protein
hypothetical 
143  2.00 66261,66280
82687,82706
20 PRV038 , PRV048   membrane protein
sequence specific ori-binding protein, OBP 
144  3.00 12016,12035
104654,104673
139929,139948
20 PRV011 , PRV064 , PRV065 , PRV076 , PRV077   tegument protein
hypothetical
gene regulator, immediate-early protein
gene regulator, immediate-early protein
hypothetical 
145  3.00 9946,9966
102338,102358
142244,142264
21 PRV009 , PRV061 , PRV064 , PRV077   tegument protein, VP22 homolog
hypothetical
hypothetical
hypothetical 
146  2.00 20265,20285
84644,84664
21 PRV014 , PRV051   DNA cleavage and encapsidation, terminase, ICP18.5 homolog
DNA helicase/primase complex protein 
147  4.00 12018,12038
12021,12041
104653,104673
139929,139949
21 PRV011 , PRV011 , PRV064 , PRV065 , PRV076 , PRV077   tegument protein
tegument protein
hypothetical
gene regulator, immediate-early protein
gene regulator, immediate-early protein
hypothetical 
148  3.00 89956,89978
105048,105070
139532,139554
23 PRV053 , PRV064 , PRV065 , PRV076 , PRV077   DNA helicase/primase complex protein, helicase motif
hypothetical
gene regulator, immediate-early protein
gene regulator, immediate-early protein
hypothetical 
149  3.00 63847,63869
114391,114413
130189,130211
23 IGR26, IGR40, IGR49  intergenic region 
150  5.00 63887,63924
114430,114467
114989,115026
129576,129613
130135,130172
38 IGR26, IGR40, IGR40, IGR49, IGR49  intergenic region 


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