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Repeat Table for Pseudorabies virus Kaplan+

The tandem repeats listed in the table were identified using the Tandem Repeat Finder by G. Genson
"Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acids Research (1999) Vol. 27, No. 2, pp. 573-580.
Repeat Name Copy # Location Length Gene & Intergenic Id(s) Definitions-Comments
Ialmenos 2.90 154,251 33    
Peneleos 3.00 507,629 41    
Adrastos 8.40 746,963 26    
Leitos 17.30 2320,2682 21 IGR1  intergenic region 
Arkesilaos 9.00 12016,12042 3 PRV011   tegument protein 
Prothoenor 2.20 12120,12146 12 PRV011   tegument protein 
Menestheus 39.40 16212,16802 15 IGR8  intergenic region 
Klonios 21.30 32674,32879 10 IGR13  intergenic region 
Askalaphos 2.90 33278,33312 12 PRV022   very large tegument protein, VP1/2 
Menelaos 3.40 33889,33954 21 PRV022   very large tegument protein, VP1/2 
Agamemnon 3.50 33904,33961 15 PRV022   very large tegument protein, VP1/2 
Nestor 2.10 33891,33965 36 PRV022   very large tegument protein, VP1/2 
Pandaros 2.00 35070,35179 54 PRV022   very large tegument protein, VP1/2 
Philoktetes 1.90 38922,38967 24 PRV022   very large tegument protein, VP1/2 
Elephenor 8.70 50181,50276 11 IGR18  intergenic region 
Amphigenea 2.10 60641,60677 18 PRV036   virion glycoprotein H, gH 
Nastes 14.00 63110,63319 15 IGR26  intergenic region 
Idomeneus 6.50 63388,63459 11 IGR26  intergenic region 
Meriones 2.60 63462,63497 14 IGR26  intergenic region 
Epistrophos 2.20 75639,75679 19 PRV042 , PRV044   unknown
DNA cleavage and packaging protein 
Agapenor 2.80 77373,77430 21 PRV043   unknown 
Amphimakhos 18.40 80325,80545 12 IGR33  intergenic region 
Thalpios 2.20 82560,82585 12 PRV048   sequence specific ori-binding protein, OBP 
Diores 2.30 92576,92714 60 PRV056   membrane-associated protein 
Polynexos 9.60 95518,95623 11 IGR38  intergenic region 
Meges 5.50 96342,96374 6 IGR38  intergenic region 
Thoas 3.70 100944,101007 18 PRV061 , IGR39  hypothetical
intergenic region 
Amphios 3.00 101201,101230 10 PRV061 , IGR39  hypothetical
intergenic region 
Aias Oileus 3.30 101212,101316 32 PRV061 , IGR39  hypothetical
intergenic region 
Tlepolemos 2.30 101289,101338 22 PRV061 , IGR39  hypothetical
intergenic region 
Nireus 2.90 101311,101403 32 PRV061 , IGR39  hypothetical
intergenic region 
Eumelos 2.30 101225,101425 86 PRV061 , IGR39  hypothetical
intergenic region 
Pheidippos 5.70 101376,101501 22 PRV061 , IGR39  hypothetical
intergenic region 
Antiphos 2.30 101644,101791 63 PRV061 , IGR39  hypothetical
intergenic region 
Euryalos 2.30 102947,102980 15 PRV064   hypothetical 
Protesilaos 3.70 103029,103072 12 PRV064   hypothetical 
Podarkes 2.80 104929,104978 18 PRV064 , PRV065   hypothetical
gene regulator, immediate-early protein 
Diomedes 19.70 106321,106379 3 PRV064 , PRV065   hypothetical
gene regulator, immediate-early protein 
Sthenelos 7.10 106321,106384 9 PRV064 , PRV065   hypothetical
gene regulator, immediate-early protein 
Medon 2.40 107989,108185 83 IGR40  intergenic region 
Podaleirios 10.50 108490,108688 19 IGR40  intergenic region 
Machaon 2.20 110599,110624 12 IGR40  intergenic region 
Eurypylos 2.20 110925,110951 12 IGR40  intergenic region 
Polypoites 2.10 112474,112503 14 IGR40  intergenic region 
Leonteus 2.10 113770,113800 15 IGR40  intergenic region 
Guneus 3.50 114051,114095 13 IGR40  intergenic region 
Prothoos 26.00 115875,115900 26 IGR40  intergenic region 
Archilokhos 30.50 116615,116791 6 PRV066   gene regulator, immediate-early protein 
Nomian Amphimakhos 19.20 116615,116784 9 PRV066   gene regulator, immediate-early protein 
Akamas 8.30 116898,116947 6 PRV066   gene regulator, immediate-early protein 
Schedios 11.70 117279,117687 35 IGR41  intergenic region 
Antiphos of Talaimenes 9.00 117752,117841 10 IGR41  intergenic region 
Odysseus 9.00 126761,126850 10 IGR48  intergenic region 
Telamonian Aias 11.70 126915,127323 35 IGR48  intergenic region 
Phoinix 8.30 127655,127704 6 PRV075   gene regulator, immediate-early protein 
Patroklos 19.20 127818,127987 9 PRV075   gene regulator, immediate-early protein 
Achilles 29.30 127818,127987 6 PRV075   gene regulator, immediate-early protein 
Asios 26.00 128702,128727 26 IGR49  intergenic region 
Hippothoos 2.10 130802,130832 15 IGR49  intergenic region 
Peiroos 2.10 132099,132128 14 IGR49  intergenic region 
Euphemos 2.20 133651,133677 12 IGR49  intergenic region 
Pyraikhmes 2.20 133978,134003 12 IGR49  intergenic region 
Pylaimenes 10.50 135914,136112 19 IGR49  intergenic region 
Odios 2.60 136396,136613 83 IGR49  intergenic region 
Epistrophos 19.70 138223,138281 3 PRV076 , PRV077   gene regulator, immediate-early protein
hypothetical 
Chromis 7.10 138218,138281 9 PRV076 , PRV077   gene regulator, immediate-early protein
hypothetical 
Ennomos 2.80 139624,139673 18 PRV076 , PRV077   gene regulator, immediate-early protein
hypothetical 
Phorkys 7.00 141540,141581 6 PRV077   hypothetical 
Askanios 2.30 141622,141655 15 PRV077   hypothetical 
Mesthles 2.30 142811,142958 63    
Glaukos 5.70 143101,143226 22    
Sarpedon 2.50 143212,143291 32    
Aeneas 2.00 143231,143338 54    
Hektor 2.40 143264,143316 22    
Priam 2.30 143178,143377 86    
Paris 3.30 143286,143390 32    
Helen 1.90 143402,143431 16    


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