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Repeat Table for Streptococcus mutans UA159, serotype C

The tandem repeats listed in the table were identified using the Tandem Repeat Finder by G. Genson
"Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acids Research (1999) Vol. 27, No. 2, pp. 573-580.
Repeat Name Repeat Type Copy # Location Length Gene & Intergenic Id(s) Definitions-Comments
SMu-TR-1 tandem 2.20 25829,25844
25844,25862
16 SMu0018 , SMu0018   glucan-binding protein B
glucan-binding protein B 
SMu-TR-2 tandem 2.70 35236,35246
35246,35264
11 SMu0026 , SMu0026   phosphoribosylformylglycinamidine synthase
phosphoribosylformylglycinamidine synthase 
SMu-TR-3 tandem 2.00 209768,209808 21 SMu0196   conserved hypothetical protein; Streptococcus-specific protein 
SMu-TR-4 tandem 1.90 219662,219680
219680,219697
19 SMu0209 , SMu0209   acetolactate synthase, large subunit (AHAS)
acetolactate synthase, large subunit (AHAS) 
SMu-TR-5 tandem 2.80 257061,257102
257101,257175
42 IGR214, IGR214  intergenic region 
SMu-TR-6 tandem 2.60 387968,387997 11 SMu0375   ABC transporter permease 
SMu-TR-7 tandem 2.00 416728,416771 22 SMu0404   glycyl tRNA synthetase beta subunit 
SMu-TR-8 tandem 2.10 427871,427918 21 IGR369  intergenic region 
SMu-TR-9 tandem 2.00 481354,481379 13 SMu0465 , IGR410  hypothetical protein
intergenic region 
SMu-TR-10 tandem 1.90 518450,518506 28 SMu0505 , IGR439  conserved hypothetical protein
intergenic region 
SMu-TR-11 tandem 2.40 571906,572189 117 SMu0556   cell surface antigen 
SMu-TR-12 tandem 1.90 621081,621119 20 SMu0604 , IGR523  conserved hypothetical protein (possible membrane protein)
intergenic region 
SMu-TR-13 tandem 2.10 827087,827118 15 IGR694  intergenic region 
SMu-TR-14 tandem 2.00 910894,910923 15 IGR760  intergenic region 
SMu-TR-15 tandem 3.50 954839,955519 195 SMu0914   glucosyltransferase-I 
SMu-TR-16 tandem 2.00 959475,959871
959865,959869
195 SMu0915 , SMu0915   glucosyltransferase-SI
glucosyltransferase-SI 
SMu-TR-17 tandem 2.20 980372,980409 17 SMu0939 , IGR814  conserved hypothetical protein
intergenic region 
SMu-TR-18 tandem 2.10 1062131,1062161 15 SMu1022   ribonucleoside ABC transporter permease 
SMu-TR-19 tandem 2.00 1168802,1168827 13 IGR969  intergenic region 
SMu-TR-20 tandem 2.00 1236745,1236782 19 SMu1199   aspartate aminotransferase 
SMu-TR-21 tandem 1.90 1261222,1261264 22 SMu1222   bacitracin synthetase; surfactin synthetase 
SMu-TR-22 tandem 2.30 1291610,1291637
1291637,1291640
14 IGR1065, IGR1065  intergenic region 
SMu-TR-23 tandem 2.10 1388847,1388871 12 IGR1151  intergenic region 
SMu-TR-24 tandem 2.00 1420714,1420755
1420755,1420755
21 IGR1178, IGR1178  intergenic region 
SMu-TR-25 tandem 2.10 1550967,1551203 111 IGR1274  intergenic region 
SMu-TR-26 tandem 7.10 1588019,1588068
1588068,1588117
1588117,1588216
1588216,1588369
50 IGR1317, IGR1317, IGR1317, SMu1525 , IGR1317  uracil phosphoribosyltransferase
intergenic region 
SMu-TR-27 tandem 3.50 1588019,1588117
1588117,1588369
99 IGR1317, SMu1525 , IGR1317  uracil phosphoribosyltransferase
intergenic region 
SMu-TR-28 tandem 2.10 1667288,1667318 15 SMu1605   conserved hypothetical protein 
SMu-TR-29 tandem 2.10 1671799,1671823 12 IGR1381  intergenic region 
SMu-TR-30 tandem 2.20 1695841,1695866 12 SMu1629   conserved hypothetical protein 
SMu-TR-31 tandem 2.10 1741366,1741387
1741387,1741409
21 IGR1445, SMu1678 , IGR1445  sucrose-6-phosphate hydrolase
intergenic region 
SMu-TR-32 tandem 5.10 1849883,1849923 8 IGR1546  intergenic region 
SMu-TR-33 tandem 2.10 1892829,1892895 32 IGR1585  intergenic region 
SMu-TR-34 tandem 2.00 1931183,1931214 16 IGR1610  intergenic region 
SMu-TR-35 tandem 2.10 2007245,2007293
2007293,2007295
24 SMu1945 , SMu1945   tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 
pLM7-TR-1 tandem 1.90 2008,2047 21    
pLM7-TR-2 tandem 2.30 2205,2232 12    


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