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Repeat Table for Tannerella forsythensis ATCC 43037

The tandem repeats listed in the table were identified using the Tandem Repeat Finder by G. Genson
"Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acids Research (1999) Vol. 27, No. 2, pp. 573-580.
Repeat Name Repeat Type Copy # Location Length Gene & Intergenic Id(s) Definitions-Comments
TF-TR-1 tandem 1.90 10643,10669 14 TF0017 , IGR0011  hypothetical protein
intergenic region 
TF-TR-2 tandem 4.40 10698,10728 7 TF0017   hypothetical protein 
TF-TR-3 tandem 1.90 10865,10891 14 TF0017   hypothetical protein 
TF-TR-4 tandem 4.40 10920,10950 7 TF0017   hypothetical protein 
TF-TR-5 tandem 5.30 10567,10788
10787,11228
11223,11442
11437,11733
220 TF0016 , TF0017 , IGR0011, TF0017 , TF0017 , TF0018 , IGR0012, TF0018   hypothetical protein
hypothetical protein
hypothetical protein
hypothetical protein
hypothetical protein
hypothetical protein 
TF-TR-6 tandem 1.90 11087,11113 14 TF0017   hypothetical protein 
TF-TR-7 tandem 1.90 11301,11327 14 IGR0012  intergenic region 
TF-TR-8 tandem 1.90 11515,11541 14 TF0018   hypothetical protein 
TF-TR-9 tandem 1.90 11758,11784 14 TF0018   hypothetical protein 
TF-TR-10 tandem 2.70 11495,12141 243 TF0018   hypothetical protein 
TF-TR-11 tandem 1.90 12001,12027 14 TF0018   hypothetical protein 
TF-TR-12 tandem 4.40 12056,12086 7 TF0018   hypothetical protein 
TF-TR-13 tandem 7.30 12301,12358 8 IGR0013  intergenic region 
TF-TR-14 tandem 1.90 23360,23458 51 TF0027   conserved hypothetical protein 
TF-TR-15 tandem 3.10 46915,46958 14 IGR0033  intergenic region 
TF-TR-16 tandem 3.20 171244,171281 12 TF0160   conserved hypothetical protein; possible Fic family protein 
TF-TR-17 tandem 2.50 183521,183682 64 IGR0134  intergenic region 
TF-TR-18 tandem 5.50 183920,184053
184051,184117
184117,184187
184182,184279
64 IGR0134, IGR0134, IGR0134, IGR0134  intergenic region 
TF-TR-19 tandem 2.30 190056,190083 12 TF0179   pyrophosphate-energized proton pump 
TF-TR-20 tandem 5.30 191164,191205 8 IGR0142  intergenic region 
TF-TR-21 tandem 4.80 207000,207037 8 IGR0151  intergenic region 
TF-TR-22 tandem 3.20 275897,275908
275908,275935
12 TF0245 , TF0245   bacterioferritin comigratory protein
bacterioferritin comigratory protein 
TF-TR-23 tandem 2.00 285874,285905 16 IGR0203  intergenic region 
TF-TR-24 tandem 4.40 308788,308829
308829,308967
41 IGR0222, TF0280 , IGR0222  hypothetical protein
intergenic region 
TF-TR-25 tandem 2.60 367241,367262
367262,367294
21 TF0346 , TF0346   hypothetical protein
hypothetical protein 
TF-TR-26 tandem 5.50 367586,367593
367593,367629
8 IGR0263, IGR0263  intergenic region 
TF-TR-27 tandem 4.40 386741,386775 8 IGR0279  intergenic region 
TF-TR-28 tandem 2.40 487343,487376 14 IGR0353  intergenic region 
TF-TR-29 tandem 2.50 487440,487492 21 TF0470   hypothetical protein 
TF-TR-30 tandem 6.30 526243,526282
526282,526291
8 IGR0379, IGR0379  intergenic region 
TF-TR-31 tandem 1.90 586627,586666 21 TF0554   Bacteroides aerotolerance protein, BatC 
TF-TR-32 tandem 2.40 586663,586684
586684,586712
21 TF0554 , TF0554   Bacteroides aerotolerance protein, BatC
Bacteroides aerotolerance protein, BatC 
TF-TR-33 tandem 2.20 615190,615466
615466,615788
276 TF0585 , TF0585   conserved hypothetical protein
conserved hypothetical protein 
TF-TR-34 tandem 2.50 615190,615466
615466,615869
276 TF0585 , TF0585   conserved hypothetical protein
conserved hypothetical protein 
TF-TR-35 tandem 2.20 629623,629650
629650,629652
14 IGR0461, IGR0461  intergenic region 
TF-TR-36 tandem 3.80 629689,629718 8 IGR0461  intergenic region 
TF-TR-37 tandem 1.90 633198,633222
633222,633243
24 TF0602 , TF0602   aminotripeptidase; peptidase T
aminotripeptidase; peptidase T 
TF-TR-38 tandem 2.90 691731,691773 15 TF0650   serine/threonine-protein kinase 
TF-TR-39 tandem 2.00 705331,705376 23 IGR0509  intergenic region 
TF-TR-40 tandem 3.70 705333,705358
705356,705377
13 IGR0509, IGR0509  intergenic region 
TF-TR-41 tandem 2.30 722680,722713 15 TF0680   tail-specific protease 
TF-TR-42 tandem 4.10 730684,730808
730808,730853
41 IGR0531, IGR0531  intergenic region 
TF-TR-43 tandem 2.10 730684,730849
730849,730853
82 IGR0531, IGR0531  intergenic region 
TF-TR-44 tandem 2.60 730933,730968 14 IGR0531  intergenic region 
TF-TR-45 tandem 2.30 731331,731362 14 IGR0532  intergenic region 
TF-TR-46 tandem 2.20 730864,731652
731652,731736
390 TF0685 , IGR0531, IGR0532, IGR0532  hypothetical protein
intergenic region 
TF-TR-47 tandem 6.80 732073,732126 8 IGR0532  intergenic region 
TF-TR-48 tandem 2.30 732072,732126 24 IGR0532  intergenic region 
TF-TR-49 tandem 3.20 776582,776632 16 IGR0562  intergenic region 
TF-TR-50 tandem 2.10 845888,845906
845906,845925
845925,845926
19 TF0791 , TF0791 , TF0791   transposase
transposase
transposase 
TF-TR-51 tandem 1.90 856463,856497 18 TF0800   conserved hypothetical protein 
TF-TR-52 tandem 2.50 864363,864407 18 TF0808   cation efflux system protein 
TF-TR-53 tandem 2.10 897101,897120
897120,897138
897138,897139
19 TF0846 , TF0846 , TF0846   ISPg3-related transposase
ISPg3-related transposase
ISPg3-related transposase 
TF-TR-54 tandem 2.70 920823,920854 12 TF0869   conserved hypothetical protein; possible transcriptional regulator 
TF-TR-55 tandem 4.20 920850,920899 12 TF0869   conserved hypothetical protein; possible transcriptional regulator 
TF-TR-56 tandem 3.50 937623,937698 22 IGR0681  intergenic region 
TF-TR-57 tandem 4.30 949506,949594
949594,949599
22 IGR0694, IGR0694  intergenic region 
TF-TR-58 tandem 2.70 949480,949524
949524,949568
949568,949599
44 IGR0694, IGR0694, IGR0694  intergenic region 
TF-TR-59 tandem 2.00 1082705,1082740 18 TF1026   beta-N-acetylglucosaminidase; beta lactamase 
TF-TR-60 tandem 2.40 1136762,1136814 22 TF1066   hypothetical protein 
TF-TR-61 tandem 2.30 1145787,1145807
1145807,1145834
21 IGR0824, IGR0824  intergenic region 
TF-TR-62 tandem 2.30 1153989,1154010
1154010,1154037
22 IGR0828, IGR0828  intergenic region 
TF-TR-63 tandem 2.30 1162613,1162634
1162634,1162661
22 IGR0834, IGR0834  intergenic region 
TF-TR-64 tandem 2.30 1165590,1165611
1165611,1165638
22 IGR0837, IGR0837  intergenic region 
TF-TR-65 tandem 2.30 1172420,1172469 22 IGR0845  intergenic region 
TF-TR-66 tandem 3.50 1172673,1172724 15 IGR0845  intergenic region 
TF-TR-67 tandem 2.30 1183242,1183291 22 IGR0852  intergenic region 
TF-TR-68 tandem 2.30 1191025,1191074 22 IGR0857  intergenic region 
TF-TR-69 tandem 2.00 1226743,1226764
1226764,1226784
22 TF1145 , TF1145   anaerobic C4-dicarboxylate membrane transporter
anaerobic C4-dicarboxylate membrane transporter 
TF-TR-70 tandem 15.00 1249188,1249201
1249201,1249215
1249215,1249229
1249229,1249273
1249273,1249296
7 IGR0899, IGR0899, IGR0899, IGR0899, TF1169 , IGR0899  lipoprotein ABC transporter, permease component
intergenic region 
TF-TR-71 tandem 6.50 1249190,1249260
1249260,1249282
14 IGR0899, TF1169 , IGR0899  lipoprotein ABC transporter, permease component
intergenic region 
TF-TR-72 tandem 2.20 1249246,1249269
1249269,1249292
1249292,1249296
24 IGR0899, TF1169 , IGR0899, TF1169   lipoprotein ABC transporter, permease component
lipoprotein ABC transporter, permease component 
TF-TR-73 tandem 6.70 1252904,1252951 7 TF1172 , IGR0901  ABC transporter, permease component
intergenic region 
TF-TR-74 tandem 5.40 1255487,1255529 8 IGR0902  intergenic region 
TF-TR-75 tandem 2.70 1255487,1255529 16 IGR0902  intergenic region 
TF-TR-76 tandem 2.10 1257982,1258014 16 IGR0904  intergenic region 
TF-TR-77 tandem 4.30 1257984,1258017 8 IGR0904  intergenic region 
TF-TR-78 tandem 7.90 1258022,1258037
1258037,1258084
8 IGR0904, IGR0904  intergenic region 
TF-TR-79 tandem 3.80 1258022,1258037
1258037,1258082
16 IGR0904, IGR0904  intergenic region 
TF-TR-80 tandem 4.80 1258227,1258264 8 IGR0904  intergenic region 
TF-TR-81 tandem 2.30 1258227,1258263 16 IGR0904  intergenic region 
TF-TR-82 tandem 2.70 1259594,1259636
1259636,1259650
21 IGR0905, IGR0905  intergenic region 
TF-TR-83 tandem 5.50 1268323,1268410 16 IGR0909  intergenic region 
TF-TR-84 tandem 3.40 1279012,1279052
1279052,1279152
41 IGR0920, IGR0920  intergenic region 
TF-TR-85 tandem 2.40 1299908,1299940 14 TF1212 , IGR0935  conserved hypothetical protein
intergenic region 
TF-TR-86 tandem 3.20 1355665,1355994
1355994,1356015
109 TF1272 , IGR0982, IGR0983, IGR0983  hypothetical protein
intergenic region 
TF-TR-87 tandem 2.10 1357818,1357851 16 TF1274   hypothetical protein 
TF-TR-88 tandem 2.20 1364193,1364233 17 TF1278   hypothetical protein 
TF-TR-89 tandem 3.80 1364198,1364267 18 TF1278   hypothetical protein 
TF-TR-90 tandem 7.40 1388056,1388279
1388279,1388502
1388502,1388725
1388725,1388878
112 TF1310 , IGR1013, TF1310 , TF1311 , TF1311 , TF1312 , TF1312 , IGR1014  hypothetical protein
hypothetical protein
hypothetical protein
hypothetical protein
hypothetical protein
hypothetical protein
intergenic region 
TF-TR-91 tandem 3.70 1388056,1388878 223 TF1310 , TF1311 , TF1312 , IGR1013, IGR1014  hypothetical protein
hypothetical protein
hypothetical protein
intergenic region
intergenic region 
TF-TR-92 tandem 15.40 1480563,1480899
1480899,1480983
1480983,1481571
1481571,1481855
84 TF1405 , TF1405 , TF1405 , TF1405   conserved hypothetical protein
conserved hypothetical protein
conserved hypothetical protein
conserved hypothetical protein 
TF-TR-93 tandem 2.20 1501165,1501182
1501182,1501203
18 TF1418 , TF1418   cell division protein
cell division protein 
TF-TR-94 tandem 2.60 1527493,1527523 12 TF1443   hypothetical protein 
TF-TR-95 tandem 2.00 1528017,1528064 24 TF1443   hypothetical protein 
TF-TR-96 tandem 2.10 1528183,1528214 15 TF1443   hypothetical protein 
TF-TR-97 tandem 2.60 1686584,1686641 22 IGR1214  intergenic region 
TF-TR-98 tandem 4.40 1686891,1686921 7 IGR1214  intergenic region 
TF-TR-99 tandem 2.00 1686888,1687077
1687076,1687264
189 TF1579 , IGR1214, TF1579   hypothetical protein
hypothetical protein 
TF-TR-100 tandem 1.90 1689371,1689570 103 TF1581 , IGR1216  hypothetical protein
intergenic region 
TF-TR-101 tandem 2.60 1690011,1690065 20 TF1583   conserved hypothetical protein; possible endonuclease 
TF-TR-102 tandem 2.60 1690134,1690188 20 TF1583   conserved hypothetical protein; possible endonuclease 
TF-TR-103 tandem 2.50 1690258,1690280
1690280,1690311
21 TF1582 , TF1583 , TF1582 , TF1583   hypothetical protein
conserved hypothetical protein; possible endonuclease
hypothetical protein
conserved hypothetical protein; possible endonuclease 
TF-TR-104 tandem 5.80 1689910,1690035
1690033,1690157
1690156,1690628
124 TF1583 , TF1583 , TF1582 , TF1583 , TF1584 , TF1585   conserved hypothetical protein; possible endonuclease
conserved hypothetical protein; possible endonuclease
hypothetical protein
conserved hypothetical protein; possible endonuclease
hypothetical protein
hypothetical protein 
TF-TR-105 tandem 2.50 1690382,1690404
1690404,1690435
21 TF1582 , TF1584 , TF1582 , TF1584   hypothetical protein
hypothetical protein
hypothetical protein
hypothetical protein 
TF-TR-106 tandem 2.50 1690506,1690528
1690528,1690559
21 TF1582 , TF1584 , TF1585 , TF1582 , TF1584 , TF1585   hypothetical protein
hypothetical protein
hypothetical protein
hypothetical protein
hypothetical protein
hypothetical protein 
TF-TR-107 tandem 2.30 1695204,1695250 20 TF1586   hypothetical protein 
TF-TR-108 tandem 1.90 1699056,1699504
1699497,1699873
441 TF1586 , TF1586   hypothetical protein
hypothetical protein 
TF-TR-109 tandem 8.00 1702259,1702279
1702279,1702314
7 IGR1218, IGR1218  intergenic region 
TF-TR-110 tandem 2.70 1702259,1702314 21 IGR1218  intergenic region 
TF-TR-111 tandem 3.30 1703162,1703207
1703207,1703236
23 IGR1219, IGR1219  intergenic region 
TF-TR-112 tandem 8.60 1703272,1703331 7 TF1589 , IGR1219  surface antigen BspA
intergenic region 
TF-TR-113 tandem 1.80 1703822,1704293 258 TF1589   surface antigen BspA 
TF-TR-114 tandem 2.60 1705302,1705371
1705371,1705440
1705440,1705479
69 TF1589 , TF1589 , TF1589   surface antigen BspA
surface antigen BspA
surface antigen BspA 
TF-TR-115 tandem 2.10 1705812,1705849 18 IGR1220  intergenic region 
TF-TR-116 tandem 2.30 1706410,1706462 23 IGR1221  intergenic region 
TF-TR-117 tandem 2.70 1707790,1707931
1707928,1707973
69 TF1591 , TF1591   surface antigen BspA
surface antigen BspA 
TF-TR-118 tandem 2.10 1708326,1708363 18 TF1591 , IGR1222  surface antigen BspA
intergenic region 
TF-TR-119 tandem 2.00 1743933,1743975 22 IGR1250  intergenic region 
TF-TR-120 tandem 2.30 1773452,1773499 21 TF1657 , IGR1268  lauroyl/myristoyl acyltransferase
intergenic region 


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