Oral Pathogen Plasmid Collection
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 Oral Pathogen Plasmid database overview  
Oral Pathogen Plasmid Collection

The Oralgen Team has assembled here the complete sequences of 9 plasmids found in five well-studied oral bacterial pathogens. The nine plasmids vary in size from a 3.6 Kb cryptic plasmid in Treponema denticola to the 580 Kb megaplasmid discovered in Prevotella intermedia. These plasmids' hosts occupy the same environment and it is anticipated that the plasmids may share other characteristics. This collection will facilitate comparison among themselves as well as comparison with the larger oral metagenome as it becomes available.

Although Helicobactor pylori is most well known as a cause of gastritis, gastric ulcers and carcinomas, it has also been located in dental plaque and implicated in recurrent aphthous ulcerations and for this reason 14 completely sequenced plasmids of H. pylori have also been included. (Kilmartin, C. 2002, Elsheikh and Mahfouz, 2005)

PLASMIDS
Name Size(Kb) GenBank Id Host
pVT745 25.4 AF302424 Actinobacillus actinomycetemcomitans
pFN1 5.9 AF159249 Fusobacterium nucleatum
pKH9 5.0 AF295336 Fusobacterium nucleatum
pPA52 6.3 AF022647 Fusobacterium nucleatum
pPI1 580 Prevotela intermedia
pYHBi1 5.1 AF454701 Prevotela intermedia
pUA140 5.6 AF068250 Streptococcus mutans
pLM7 5.7 AF050494 Streptococcus mutans
pTS1 3.6 AF112856 Treponema denticola
pAL202 12.1 NC_005917 Helicobactor pylori
pAL226 9.9 DQ239897 Helicobactor pylori
pHe14 11 NC_004950 Helicobactor pylori
pHe15 18.3 NC_004949 Helicobactor pylori
pHP51 4 NC_004767 Helicobactor pylori
pHPO100 3.5 NC_002110 Helicobactor pylori
pHP489 1.2 NC_001843 Helicobactor pylori
pHP666 8.1 DQ198799 Helicobactor pylori
pHPAG1 9.4 CP000242 Helicobactor pylori
pHPK255 1.5 S84689 Helicobactor pylori
pHPM8 7.8 NC_004845 Helicobactor pylori
pHPM180 3.5 NC_001756 Helicobactor pylori
pHPM186 12.9 NC_001476 Helicobactor pylori
pHPS1 5.8 AF019894 Helicobactor pylori


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