Porphyromonas gingivalis

Porphyromonas gingivalis W83
Gene Image Map Porphyromonas gingivalis is a gram-negative oral anerobe found in periodontal lesions and associated with adult periodontal disease. Strain W83 was sequenced by The Institute for Genomic Research (TIGR) and a pre-published version became available June 2001. On this site General properties of P. gingivalis are available as well as an overview map of the genome and information summary through the Gene Image Map. A dynamic visualization tool with both linear and circular representations is available named BugBrowser.

The core information in this database is the table of annotated records, one for each of the more than 2000 predicted open reading frames. Each gene record is identified by a gene id, PG0001-PG1949. Simple summaries of specific information are available below in the Predefined Database Searches and contain links to the complete gene record. Comparisons between the open reading frames predicted by TIGR and by the LANL database team are summarized in three tables below.

The power of a relational database is demonstrated in the ability to search its information. We provide five search tools, each with different characteristics. The Basic Search allows a simple query of many fields for a text term. The Intermediate Search allows the user to search specific tables, to search a range of molecular weights or isoelectric points and to search the protein or nucleotide sequences for simple patterns. The Protein Motif Search allows searching protein sequences for sophisticated amino acid patterns.

User Defined Database Searches
Basic Search
Intermediate Search
Sequence Search
Protein Motif Search
Repeat Search
DNA/RNA Motif Search

Predefined Database Searches
Genomic Island Table
Secondary Structure Table
Definition Table
Functional Classes Table
EC Table
PDB Table
Metabolic Pathways
Repeat Table
Codon Usage Table

Specialized Analysis
Bacteroides Conjugative Transposons
Phylogenetic Fingerprints
Insertion Sequences
Fimbrillin Genes
Proteases/Hemagglutinin Analysis
Proteome and Gene Cluster Comparisons
ABC Transporters
Base Composition Analysis

RNA Tables and Maps
Transfer RNA Table
Ribosomal RNA Table
Transfer & Ribosomal RNA Map

Comparison with TIGR Predicted Genes
TIGR-Only Predicted Genes
LANL-Only Predicted Genes
TIGR-LANL Predicted Genes

Los Alamos National Laboratory • Est 1943