ISPg1 is a member of the IS5 family of IS elements. There are 22 intact and complete copies, 4 copies with insertions and 7 incomplete fragments larger than 100 bp in the genome of P.gingivalis, strain W83. There is sequence heterogeneity among copies and incomplete copies. Following is the nucleic acid sequence for a typical ISPg1. The inverted repeats are shown in purple , the start and stop codons for the transposase are shown in red.

Genome coordinates for each occurrence of ISPg1 are found in the database records of this insertion sequence.

1334 bp

GAGACCTTTGCACGGCGATTGGCGTATATTTTGTTTGTTAATTCATTGTA
TAATAGGGAGTTATTTTGTATATTTGAGTATTAAAAACAGCATAATATTC
CTCCCATGGCATACCAATCCAAGAATACCGATGAGCATGTAACATTTGCA
GACGCACTCCTTTCAAAGCGTTATCGCAAAGCACAAAACGACTTCCTCAA
TCAGGTTGACAGGCTTATCGATTGGCGTCCGATCAGGACGCTGATCAACA
AGAAATACACGAAGCGACAAAATGCCATCGGCGCCCCGGCTTATGACGTG
ATTCTCTTATTCAAGATGTTGCTTTTGGAGACATGGTACAACCTCAGTGA
TTGTGCTTTGGAGGAGCGCATCAATGATTCAATCACCTTTTCCCGATTCT
TGGGGCTATGGAAGAGGTATCTCCCGACCACAGCACCATCAGTCGATTTC
GTTCGGCACTGACAGAGTTGGGGCTCATGGACAAACTATTGGCGCAGTTT
AACAAACAACTTTCCCGCCATCACATTTCGGTCAGGGAAGGGGTGCTTGT
CGATGCAAGCCTTGTGGAGACGCCGCATAAACCCAACGGAAGCATTACGA
TTGAAGTCGCAGACGACAGAGAAGACAATCGGAGCGAGGAGGAAAAAGAG
GCAGAGGAGGATTATCAAAAACAGGTTGTCCGTCAGCGTAAAGGGACGGA
TGAAGAAGCCCGTTGGGTTTACAAACAAAAGCGTTATCACTACGGATACA
AAAAGCATTGTCTGACCAATGTTCAAGGCATTGTTCAAAAGGTGATAACG
ACAGCAGCGAATCGCAGTGACACGAAGGAGTTTATTCCGCTATTGCAGGG
TGCAAACATACCTCAAGGCACAGCCGTCTTCGCGGACAAAGGATATGCTT
GCGGGGAAAATCGTTCCTACCTGCAAACCCATCACCTTCAAGACGGCATC
ATGCACAAGGCACAACGCAACAGGGCATTGACCGAGGAAGAGAAGCAACG
AAACAAAGCAATCAGTCGGATACGGAGCACCATCGAACGCACCTTTGGCA
GTATTCGCCGGTGGTTTCATGGCGGACGATGTCGATACCGGGGACTTGCC
AAGACCCATACTCAAAACATTCTTGAAAGCATCGCCTTTAATTTATACAG
GACCCCGGGGATAATTATGTCCTCATCTCTAGGATAAGGCATAACCCCCC
TTGAGGAGCTCGTGCAAGCAGCTCCTCAAGGGGGGATTTACAACTACTTT
CACTCCTTACTGCCACCCCTTTCACTCGCTCCTTTTTTGCCAAGAACTCC
TCTTCCCTCCACCTCCTTATTTTGCAAAGGTCTC

ORAGEN Bioinformatics
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