BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= PG0346
(678 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|34540208|ref|NP_904687.1| excinuclease ABC subunit B [Po... 1326 0.0
gi|154494931|ref|ZP_02033936.1| hypothetical protein PARMER... 996 0.0
gi|150006946|ref|YP_001301689.1| excinuclease ABC, B subuni... 994 0.0
gi|29345980|ref|NP_809483.1| excinuclease ABC subunit B [Ba... 874 0.0
gi|53713912|ref|YP_099904.1| excinuclease ABC subunit B [Ba... 870 0.0
gi|60682121|ref|YP_212265.1| excinuclease ABC subunit B [Ba... 870 0.0
gi|156108523|gb|EDO10268.1| hypothetical protein BACOVA_037... 867 0.0
gi|153806678|ref|ZP_01959346.1| hypothetical protein BACCAC... 865 0.0
gi|150005555|ref|YP_001300299.1| UvrABC SOS-repair system p... 861 0.0
gi|156862298|gb|EDO55729.1| hypothetical protein BACUNI_005... 858 0.0
gi|88713816|ref|ZP_01107897.1| excinuclease ABC subunit B [... 855 0.0
gi|126663561|ref|ZP_01734558.1| excinuclease ABC subunit B ... 848 0.0
gi|86142267|ref|ZP_01060777.1| excinuclease ABC subunit B [... 841 0.0
gi|89890826|ref|ZP_01202335.1| UvrABC excinuclease ABC subu... 841 0.0
gi|149277623|ref|ZP_01883764.1| excinuclease ABC, subunit B... 833 0.0
gi|88806149|ref|ZP_01121667.1| excinuclease ABC subunit B [... 832 0.0
gi|120436638|ref|YP_862324.1| UvrABC system protein B [Gram... 831 0.0
gi|126647252|ref|ZP_01719762.1| excinuclease ABC subunit B ... 829 0.0
gi|86132353|ref|ZP_01050948.1| excinuclease ABC subunit B [... 826 0.0
gi|86133729|ref|ZP_01052311.1| excinuclease ABC subunit B [... 824 0.0
gi|91215169|ref|ZP_01252141.1| excinuclease ABC subunit B [... 823 0.0
gi|88802767|ref|ZP_01118294.1| excinuclease ABC subunit B [... 823 0.0
gi|110636435|ref|YP_676642.1| excinuclease ABC, subunit B [... 821 0.0
gi|83856637|ref|ZP_00950166.1| excinuclease ABC subunit B [... 819 0.0
gi|146299926|ref|YP_001194517.1| excinuclease ABC, B subuni... 817 0.0
gi|150024988|ref|YP_001295814.1| Excinuclease ABC, B subuni... 813 0.0
gi|124009064|ref|ZP_01693748.1| excinuclease ABC, B subunit... 812 0.0
gi|149370618|ref|ZP_01890307.1| excinuclease ABC subunit B ... 793 0.0
gi|83815715|ref|YP_445286.1| excinuclease ABC, B subunit [S... 754 0.0
gi|77917717|ref|YP_355532.1| excinuclease ABC, B subunit [P... 735 0.0
gi|146283328|ref|YP_001173481.1| excinuclease ABC, B subuni... 726 0.0
gi|110596901|ref|ZP_01385191.1| excinuclease ABC, B subunit... 725 0.0
gi|78188292|ref|YP_378630.1| excinuclease ABC subunit B [Ch... 724 0.0
gi|118744020|ref|ZP_01592018.1| excinuclease ABC, B subunit... 724 0.0
gi|21674365|ref|NP_662430.1| excinuclease ABC subunit B [Ch... 722 0.0
gi|50085644|ref|YP_047154.1| excinuclease ABC subunit B [Ac... 720 0.0
gi|95929119|ref|ZP_01311864.1| excinuclease ABC, B subunit ... 719 0.0
gi|114773972|ref|ZP_01450853.1| excinuclease ABC subunit B ... 719 0.0
gi|109899270|ref|YP_662525.1| excinuclease ABC, B subunit [... 719 0.0
gi|88795773|ref|ZP_01111464.1| excinuclease ABC subunit B [... 719 0.0
gi|148262374|ref|YP_001229080.1| excinuclease ABC, B subuni... 717 0.0
gi|78186279|ref|YP_374322.1| excinuclease ABC subunit B [Pe... 717 0.0
gi|78224410|ref|YP_386157.1| excinuclease ABC subunit B [Ge... 716 0.0
gi|68548663|ref|ZP_00588132.1| Excinuclease ABC, B subunit ... 716 0.0
gi|119858664|ref|ZP_01640085.1| excinuclease ABC, B subunit... 715 0.0
gi|126701035|ref|YP_001089932.1| excinuclease ABC subunit B... 715 0.0
gi|108759548|ref|YP_630851.1| excinuclease ABC, B subunit [... 714 0.0
gi|145952562|ref|ZP_01801571.1| hypothetical protein CdifQ_... 714 0.0
gi|150380801|ref|ZP_01919840.1| excinuclease ABC, B subunit... 714 0.0
gi|20808375|ref|NP_623546.1| excinuclease ABC subunit B [Th... 714 0.0
gi|116333297|ref|YP_794824.1| Helicase subunit of the DNA e... 713 0.0
gi|118756842|ref|ZP_01604613.1| excinuclease ABC, B subunit... 713 0.0
gi|119944840|ref|YP_942520.1| excinuclease ABC, B subunit [... 713 0.0
gi|39998352|ref|NP_954303.1| excinuclease ABC subunit B [Ge... 713 0.0
gi|76796770|ref|ZP_00779123.1| Excinuclease ABC, B subunit ... 712 0.0
gi|37525442|ref|NP_928786.1| excinuclease ABC subunit B [Ph... 712 0.0
gi|121308602|dbj|BAF43695.1| excision nuclease subunit B [V... 712 0.0
gi|125972830|ref|YP_001036740.1| excinuclease ABC, B subuni... 711 0.0
gi|71737418|ref|YP_274169.1| excinuclease ABC, B subunit [P... 711 0.0
gi|68551502|ref|ZP_00590897.1| Excinuclease ABC, B subunit ... 711 0.0
gi|77360053|ref|YP_339628.1| ATP-dependent DNA excision rep... 711 0.0
gi|117621062|ref|YP_856963.1| excinuclease ABC, B subunit [... 711 0.0
gi|116051134|ref|YP_790035.1| excinuclease ABC subunit B [P... 710 0.0
gi|26988700|ref|NP_744125.1| excinuclease ABC subunit B [Ps... 710 0.0
gi|59711543|ref|YP_204319.1| excinuclease ABC subunit B [Vi... 710 0.0
gi|146307759|ref|YP_001188224.1| excinuclease ABC, B subuni... 710 0.0
gi|148548992|ref|YP_001269094.1| excinuclease ABC, B subuni... 710 0.0
gi|15602294|ref|NP_245366.1| excinuclease ABC subunit B [Pa... 710 0.0
gi|149181818|ref|ZP_01860308.1| excinuclease ABC subunit B ... 710 0.0
gi|15598334|ref|NP_251828.1| excinuclease ABC subunit B [Ps... 710 0.0
gi|152985171|ref|YP_001347370.1| excinuclease ABC, B subuni... 709 0.0
gi|66045214|ref|YP_235055.1| excinuclease ABC subunit B [Ps... 709 0.0
gi|77458102|ref|YP_347607.1| excinuclease ABC subunit B [Ps... 709 0.0
gi|77960824|ref|ZP_00824679.1| COG0556: Helicase subunit of... 709 0.0
gi|126356822|ref|ZP_01713826.1| excinuclease ABC, B subunit... 709 0.0
gi|28869367|ref|NP_791986.1| excinuclease ABC subunit B [Ps... 709 0.0
gi|113461753|ref|YP_719822.1| excinuclease ABC, subunit B [... 709 0.0
gi|116492251|ref|YP_803986.1| Helicase subunit of the DNA e... 709 0.0
gi|84326065|ref|ZP_00974095.1| COG0556: Helicase subunit of... 709 0.0
gi|1592818|emb|CAA63759.1| uvrB [Pseudomonas aeruginosa] 709 0.0
gi|70729426|ref|YP_259164.1| excinuclease ABC subunit B [Ps... 708 0.0
gi|90021398|ref|YP_527225.1| excinuclease ABC, B subunit [S... 708 0.0
gi|53803510|ref|YP_114621.1| excinuclease ABC subunit B [Me... 708 0.0
gi|119357816|ref|YP_912460.1| excinuclease ABC, B subunit [... 708 0.0
gi|104780800|ref|YP_607298.1| exonuclease ABC subunit B (AT... 708 0.0
gi|67938771|ref|ZP_00531291.1| Excinuclease ABC, B subunit ... 708 0.0
gi|119469464|ref|ZP_01612368.1| excinuclease ABC subunit B ... 707 0.0
gi|27366360|ref|NP_761888.1| excinuclease ABC subunit B [Vi... 707 0.0
gi|37679377|ref|NP_933986.1| excinuclease ABC subunit B [Vi... 707 0.0
gi|67917946|ref|ZP_00511549.1| Excinuclease ABC, B subunit ... 707 0.0
gi|88859835|ref|ZP_01134474.1| ATP-dependent DNA excision r... 707 0.0
gi|52425426|ref|YP_088563.1| excinuclease ABC subunit B [Ma... 707 0.0
gi|24112147|ref|NP_706657.1| excinuclease ABC subunit B [Sh... 706 0.0
gi|53728717|ref|ZP_00348221.1| COG0556: Helicase subunit of... 706 0.0
gi|152978761|ref|YP_001344390.1| excinuclease ABC, B subuni... 706 0.0
gi|118067482|ref|ZP_01535738.1| excinuclease ABC, B subunit... 706 0.0
gi|50121744|ref|YP_050911.1| excinuclease ABC subunit B [Er... 706 0.0
gi|145619926|ref|ZP_01775968.1| excinuclease ABC, B subunit... 706 0.0
gi|117920610|ref|YP_869802.1| excinuclease ABC, B subunit [... 706 0.0
gi|77957357|ref|ZP_00821415.1| COG0556: Helicase subunit of... 706 0.0
gi|77976765|ref|ZP_00832237.1| COG0556: Helicase subunit of... 705 0.0
gi|114047410|ref|YP_737960.1| excinuclease ABC, B subunit [... 705 0.0
gi|153800908|ref|ZP_01955494.1| excinuclease ABC subunit B ... 705 0.0
gi|116188709|ref|ZP_01478476.1| hypothetical protein VchoM_... 705 0.0
gi|116216789|ref|ZP_01482620.1| hypothetical protein VchoR_... 705 0.0
gi|150422351|gb|EDN14312.1| excinuclease ABC subunit B [Vib... 705 0.0
gi|156934731|ref|YP_001438647.1| hypothetical protein ESA_0... 705 0.0
gi|149377056|ref|ZP_01894807.1| excinuclease ABC subunit B ... 704 0.0
gi|116513719|ref|YP_812625.1| Helicase subunit of the DNA e... 704 0.0
gi|104773722|ref|YP_618702.1| Excinuclease ABC, subunit B [... 704 0.0
gi|76787746|ref|YP_330102.1| excinuclease ABC subunit B [St... 704 0.0
gi|116494463|ref|YP_806197.1| Helicase subunit of the DNA e... 704 0.0
gi|42518788|ref|NP_964718.1| excinuclease ABC subunit B [La... 704 0.0
gi|52082051|ref|YP_080842.1| excinuclease ABC subunit B [Ba... 704 0.0
gi|53729175|ref|ZP_00134015.2| COG0556: Helicase subunit of... 704 0.0
gi|87122161|ref|ZP_01078044.1| excinuclease ABC, B subunit ... 704 0.0
gi|145219261|ref|YP_001129970.1| excinuclease ABC, B subuni... 703 0.0
gi|113970398|ref|YP_734191.1| excinuclease ABC, B subunit [... 703 0.0
gi|118581885|ref|YP_903135.1| excinuclease ABC, B subunit [... 703 0.0
gi|153838169|ref|ZP_01990836.1| excinuclease ABC, B subunit... 703 0.0
gi|146310929|ref|YP_001176003.1| excinuclease ABC, B subuni... 703 0.0
gi|29375355|ref|NP_814509.1| excinuclease ABC subunit B [En... 703 0.0
gi|94493090|ref|ZP_01300294.1| hypothetical protein Rgryl_0... 703 0.0
gi|28898874|ref|NP_798479.1| excinuclease ABC subunit B [Vi... 702 0.0
gi|15642773|ref|NP_230664.1| excinuclease ABC subunit B [Vi... 702 0.0
gi|94990640|ref|YP_598740.1| Excinuclease ABC subunit B [St... 702 0.0
gi|77409684|ref|ZP_00786351.1| excinuclease ABC, B subunit ... 702 0.0
gi|22537607|ref|NP_688458.1| excinuclease ABC subunit B [St... 702 0.0
gi|139473634|ref|YP_001128350.1| UvrABC system protein B (U... 702 0.0
gi|153854478|ref|ZP_01995756.1| hypothetical protein DORLON... 702 0.0
gi|24374050|ref|NP_718093.1| excinuclease ABC subunit B [Sh... 702 0.0
gi|153093646|gb|EDN74607.1| excinuclease ABC subunit B [Man... 701 0.0
gi|71903721|ref|YP_280524.1| excinuclease ABC subunit B [St... 701 0.0
gi|90417042|ref|ZP_01224970.1| excinuclease ABC, B subunit ... 701 0.0
gi|21910532|ref|NP_664800.1| excinuclease ABC subunit B [St... 701 0.0
gi|71281240|ref|YP_269592.1| excinuclease ABC, B subunit [C... 701 0.0
gi|56460889|ref|YP_156170.1| excinuclease ABC subunit B [Id... 700 0.0
gi|145636889|ref|ZP_01792554.1| excinuclease ABC subunit B ... 700 0.0
gi|19746295|ref|NP_607431.1| excinuclease ABC subunit B [St... 700 0.0
gi|148977620|ref|ZP_01814196.1| excinuclease ABC subunit B ... 700 0.0
gi|146292950|ref|YP_001183374.1| excinuclease ABC, B subuni... 700 0.0
gi|148543619|ref|YP_001270989.1| excinuclease ABC, B subuni... 700 0.0
gi|50914390|ref|YP_060362.1| excinuclease ABC subunit B [St... 700 0.0
gi|15800530|ref|NP_286542.1| excinuclease ABC subunit B [Es... 699 0.0
gi|145299263|ref|YP_001142104.1| uvrABC system subunit B [A... 699 0.0
gi|150391818|ref|YP_001321867.1| excinuclease ABC, B subuni... 699 0.0
gi|92088578|ref|ZP_01273539.1| Excinuclease ABC, B subunit ... 699 0.0
gi|116629946|ref|YP_815118.1| Helicase subunit of the DNA e... 699 0.0
gi|68055616|ref|ZP_00539759.1| Excinuclease ABC, B subunit ... 699 0.0
gi|85712417|ref|ZP_01043466.1| excinuclease ABC subunit B [... 699 0.0
gi|51891289|ref|YP_073980.1| excinuclease ABC subunit B [Sy... 699 0.0
gi|75236187|ref|ZP_00720304.1| COG0556: Helicase subunit of... 699 0.0
gi|154499910|ref|ZP_02037948.1| hypothetical protein BACCAP... 698 0.0
gi|78486095|ref|YP_392020.1| excinuclease ABC, B subunit [T... 698 0.0
gi|26246750|ref|NP_752790.1| excinuclease ABC subunit B [Es... 698 0.0
gi|138896673|ref|YP_001127126.1| Excinuclease ABC subunit B... 698 0.0
gi|119774963|ref|YP_927703.1| excinuclease ABC, B subunit [... 698 0.0
gi|153893868|ref|ZP_02014460.1| excinuclease ABC, B subunit... 698 0.0
gi|24213349|ref|NP_710830.1| excinuclease ABC subunit B [Le... 698 0.0
gi|89210700|ref|ZP_01189086.1| Excinuclease ABC, B subunit ... 698 0.0
gi|68250221|ref|YP_249333.1| excinuclease ABC subunit B [Ha... 698 0.0
gi|145630876|ref|ZP_01786653.1| excinuclease ABC subunit B ... 698 0.0
gi|120598965|ref|YP_963539.1| excinuclease ABC, B subunit [... 697 0.0
gi|116327526|ref|YP_797246.1| Helicase subunit of the DNA e... 697 0.0
gi|82776151|ref|YP_402498.1| excision nuclease subunit B [S... 697 0.0
gi|15675262|ref|NP_269436.1| excinuclease ABC subunit B [St... 697 0.0
gi|127512992|ref|YP_001094189.1| excinuclease ABC, B subuni... 697 0.0
gi|88810664|ref|ZP_01125921.1| Excinuclease ABC, B subunit ... 697 0.0
gi|94994564|ref|YP_602662.1| Excinuclease ABC subunit B [St... 697 0.0
gi|42631849|ref|ZP_00157387.1| COG0556: Helicase subunit of... 697 0.0
gi|85058885|ref|YP_454587.1| excision nuclease subunit B [S... 697 0.0
gi|153814663|ref|ZP_01967331.1| hypothetical protein RUMTOR... 697 0.0
gi|42523763|ref|NP_969143.1| excinuclease ABC subunit B [Bd... 697 0.0
gi|33152480|ref|NP_873833.1| excinuclease ABC subunit B [Ha... 697 0.0
gi|94968809|ref|YP_590857.1| excinuclease ABC, B subunit [A... 697 0.0
gi|16273166|ref|NP_439403.1| excinuclease ABC subunit B [Ha... 697 0.0
gi|86147958|ref|ZP_01066262.1| excinuclease ABC subunit B [... 697 0.0
gi|42629411|ref|ZP_00154958.1| COG0556: Helicase subunit of... 696 0.0
gi|84393387|ref|ZP_00992146.1| excinuclease ABC subunit B [... 696 0.0
gi|43284|emb|CAA27314.1| uvrB [Escherichia coli] 696 0.0
gi|67157261|ref|ZP_00418563.1| Excinuclease ABC, B subunit ... 696 0.0
gi|114563341|ref|YP_750854.1| excinuclease ABC, B subunit [... 696 0.0
gi|149911642|ref|ZP_01900252.1| Putative excinuclease ABC s... 696 0.0
gi|91227346|ref|ZP_01261735.1| excinuclease ABC subunit B [... 696 0.0
gi|154687631|ref|YP_001422792.1| UvrB [Bacillus amyloliquef... 696 0.0
gi|16080570|ref|NP_391397.1| excinuclease ABC subunit B [Ba... 696 0.0
gi|56964823|ref|YP_176554.1| excinuclease ABC subunit B [Ba... 696 0.0
gi|15616157|ref|NP_244462.1| excinuclease ABC subunit B [Ba... 696 0.0
gi|133930529|gb|ABO43835.1| excinuclease ABC, B subunit [La... 696 0.0
gi|116185189|ref|ZP_01475105.1| hypothetical protein VEx2w_... 695 0.0
gi|118072900|ref|ZP_01541086.1| excinuclease ABC, B subunit... 695 0.0
gi|91793153|ref|YP_562804.1| excinuclease ABC, B subunit [S... 695 0.0
gi|15893793|ref|NP_347142.1| excinuclease ABC subunit B [Cl... 695 0.0
gi|120602573|ref|YP_966973.1| excinuclease ABC, B subunit [... 694 0.0
gi|146320885|ref|YP_001200596.1| Helicase subunit of the DN... 694 0.0
gi|46908661|ref|YP_015050.1| excinuclease ABC subunit B [Li... 694 0.0
gi|28377628|ref|NP_784520.1| excinuclease ABC subunit B [La... 694 0.0
gi|69248957|ref|ZP_00604830.1| Excinuclease ABC, B subunit ... 693 0.0
gi|120553961|ref|YP_958312.1| excinuclease ABC, B subunit [... 693 0.0
gi|51595531|ref|YP_069722.1| excinuclease ABC subunit B [Ye... 693 0.0
gi|46580016|ref|YP_010824.1| excinuclease ABC subunit B [De... 693 0.0
gi|85860217|ref|YP_462419.1| excinuclease ABC subunit B [Sy... 693 0.0
gi|47092775|ref|ZP_00230560.1| excinuclease ABC, B subunit ... 693 0.0
gi|152969361|ref|YP_001334470.1| excinuclease ABC subunit B... 693 0.0
gi|16804527|ref|NP_466012.1| excinuclease ABC subunit B [Li... 693 0.0
gi|81096054|ref|ZP_00874404.1| Excinuclease ABC, B subunit ... 693 0.0
gi|77973928|ref|ZP_00829472.1| COG0556: Helicase subunit of... 693 0.0
gi|118443519|ref|YP_877357.1| excinuclease ABC, B subunit [... 692 0.0
gi|113950786|ref|ZP_01436400.1| excinuclease ABC, B subunit... 692 0.0
gi|78043646|ref|YP_359130.1| excinuclease ABC subunit B [Ca... 692 0.0
gi|125718171|ref|YP_001035304.1| Helicase subunit of the DN... 692 0.0
gi|123443116|ref|YP_001007090.1| excinuclease ABC subunit B... 692 0.0
gi|16801694|ref|NP_471962.1| excinuclease ABC subunit B [Li... 692 0.0
gi|90411666|ref|ZP_01219676.1| excinuclease ABC subunit B [... 691 0.0
gi|126090180|ref|YP_001041661.1| hypothetical protein Sbal_... 691 0.0
gi|149117884|ref|ZP_01844534.1| excinuclease ABC, B subunit... 691 0.0
gi|94499201|ref|ZP_01305739.1| excinuclease ABC subunit B [... 691 0.0
gi|149924580|ref|ZP_01912936.1| excinuclease ABC subunit B ... 691 0.0
gi|153956169|ref|YP_001396934.1| UvrB [Clostridium kluyveri... 691 0.0
gi|15901100|ref|NP_345704.1| excinuclease ABC subunit B [St... 691 0.0
gi|83647651|ref|YP_436086.1| excinuclease ABC, B subunit [H... 691 0.0
gi|28212086|ref|NP_783030.1| excinuclease ABC subunit B [Cl... 691 0.0
gi|153005353|ref|YP_001379678.1| excinuclease ABC, B subuni... 691 0.0
gi|88706030|ref|ZP_01103738.1| excinuclease ABC, B subunit ... 691 0.0
gi|149012289|ref|ZP_01833358.1| excinuclease ABC, B subunit... 690 0.0
gi|90579146|ref|ZP_01234956.1| excinuclease ABC subunit B [... 690 0.0
gi|116490460|ref|YP_810004.1| Helicase subunit of the DNA e... 690 0.0
gi|149019230|ref|ZP_01834592.1| excinuclease ABC subunit B ... 690 0.0
gi|89073356|ref|ZP_01159880.1| excinuclease ABC subunit B [... 690 0.0
gi|29653858|ref|NP_819550.1| excinuclease ABC subunit B [Co... 690 0.0
gi|157083792|gb|ABV13470.1| hypothetical protein CKO_02348 ... 690 0.0
gi|15903161|ref|NP_358711.1| excinuclease ABC subunit B [St... 690 0.0
gi|153207959|ref|ZP_01946512.1| excinuclease ABC, B subunit... 690 0.0
gi|154706129|ref|YP_001424888.1| excinuclease ABC, B subuni... 689 0.0
gi|93279489|pdb|2FDC|A Chain A, Structural Basis Of Dna Dam... 689 0.0
gi|134300897|ref|YP_001114393.1| excinuclease ABC, B subuni... 689 0.0
gi|126652449|ref|ZP_01724621.1| excinuclease ABC subunit B ... 689 0.0
gi|121535499|ref|ZP_01667308.1| excinuclease ABC, B subunit... 689 0.0
gi|115380116|ref|ZP_01467152.1| excinuclease ABC, B subunit... 689 0.0
gi|56421621|ref|YP_148939.1| excinuclease ABC subunit B [Ge... 689 0.0
gi|16121452|ref|NP_404765.1| excinuclease ABC subunit B [Ye... 689 0.0
gi|83745732|ref|ZP_00942789.1| Excinuclease ABC subunit B [... 689 0.0
gi|152997223|ref|YP_001342058.1| excinuclease ABC, B subuni... 689 0.0
gi|119505293|ref|ZP_01627368.1| excinuclease ABC subunit B ... 689 0.0
gi|54308311|ref|YP_129331.1| excinuclease ABC subunit B [Ph... 689 0.0
gi|54293037|ref|YP_125452.1| excinuclease ABC subunit B [Le... 689 0.0
gi|121308596|dbj|BAF43690.1| excision nuclease subunit B [P... 689 0.0
gi|58337009|ref|YP_193594.1| excinuclease ABC subunit B [La... 689 0.0
gi|157074512|gb|ABV09195.1| excinuclease ABC, B subunit [St... 689 0.0
gi|153854|gb|AAA27020.1| uvs402 protein 689 0.0
gi|56414100|ref|YP_151175.1| excinuclease ABC subunit B [Sa... 688 0.0
gi|73748283|ref|YP_307522.1| excinuclease ABC subunit B [De... 688 0.0
gi|108807059|ref|YP_650975.1| excinuclease ABC subunit B [Y... 688 0.0
gi|16759723|ref|NP_455340.1| excinuclease ABC subunit B [Sa... 688 0.0
gi|52840327|ref|YP_094126.1| excinuclease ABC subunit B [Le... 688 0.0
gi|55821473|ref|YP_139915.1| excinuclease ABC subunit B [St... 688 0.0
gi|57234749|ref|YP_181185.1| excinuclease ABC subunit B [De... 688 0.0
gi|116617516|ref|YP_817887.1| Helicase subunit of the DNA e... 688 0.0
gi|89098752|ref|ZP_01171633.1| excinuclease ABC subunit B [... 687 0.0
gi|82702490|ref|YP_412056.1| excinuclease ABC, B subunit [N... 687 0.0
gi|118587561|ref|ZP_01544985.1| excinuclease ABC, B subunit... 687 0.0
gi|16764161|ref|NP_459776.1| excinuclease ABC subunit B [Sa... 687 0.0
gi|116628195|ref|YP_820814.1| Helicase subunit of the DNA e... 687 0.0
gi|114777054|ref|ZP_01452074.1| excinuclease ABC subunit B ... 687 0.0
gi|54296068|ref|YP_122437.1| excinuclease ABC subunit B [Le... 687 0.0
gi|106894042|ref|ZP_01361164.1| Excinuclease ABC, B subunit... 687 0.0
gi|150019672|ref|YP_001311926.1| excinuclease ABC, B subuni... 687 0.0
gi|9910887|sp|P56981|UVRB_BACCA UvrABC system protein B (Pr... 687 0.0
gi|147669063|ref|YP_001213881.1| excinuclease ABC, B subuni... 687 0.0
gi|7766820|pdb|1D9Z|A Chain A, Crystal Structure Of The Dna... 687 0.0
gi|144899714|emb|CAM76578.1| Helicase subunit of the DNA ex... 687 0.0
gi|148358232|ref|YP_001249439.1| excinuclease ABC subunit B... 687 0.0
gi|153835330|ref|ZP_01987997.1| excinuclease ABC, B subunit... 686 0.0
gi|156975233|ref|YP_001446140.1| hypothetical protein VIBHA... 686 0.0
gi|50513706|pdb|1T5L|A Chain A, Crystal Structure Of The Dn... 686 0.0
gi|89092647|ref|ZP_01165600.1| excinuclease ABC subunit B [... 686 0.0
gi|30248789|ref|NP_840859.1| excinuclease ABC subunit B [Ni... 686 0.0
gi|28971417|emb|CAD70605.1| excinuclease ABC, subunit B [Ba... 686 0.0
gi|114331080|ref|YP_747302.1| excinuclease ABC, B subunit [... 686 0.0
gi|86157701|ref|YP_464486.1| excinuclease ABC, B subunit [A... 686 0.0
gi|148657804|ref|YP_001278009.1| excinuclease ABC, B subuni... 686 0.0
gi|149177973|ref|ZP_01856570.1| excinuclease ABC subunit B ... 686 0.0
gi|92113956|ref|YP_573884.1| excinuclease ABC, B subunit [C... 686 0.0
gi|126669089|ref|ZP_01740020.1| excinuclease ABC subunit B ... 686 0.0
gi|148993848|ref|ZP_01823250.1| excinuclease ABC, B subunit... 686 0.0
gi|91203251|emb|CAJ72890.1| strongly similar to UvrABC syst... 685 0.0
gi|110833806|ref|YP_692665.1| excinuclease ABC, B subunit [... 685 0.0
gi|119476531|ref|ZP_01616882.1| excinuclease ABC subunit B ... 685 0.0
gi|153888878|ref|ZP_02010015.1| excinuclease ABC, B subunit... 685 0.0
gi|114565819|ref|YP_752973.1| excinuclease ABC, B subunit [... 685 0.0
gi|119875660|ref|ZP_01642722.1| excinuclease ABC, B subunit... 685 0.0
gi|148272932|ref|YP_001222493.1| putative excinuclease ABC ... 685 0.0
gi|71065305|ref|YP_264032.1| excinuclease ABC subunit B [Ps... 685 0.0
gi|17545730|ref|NP_519132.1| excinuclease ABC subunit B [Ra... 684 0.0
gi|121530088|ref|ZP_01662698.1| putative excinuclease ABC s... 684 0.0
gi|67921104|ref|ZP_00514623.1| Excinuclease ABC, B subunit ... 684 0.0
gi|156866993|gb|EDO60365.1| hypothetical protein CLOLEP_031... 683 0.0
gi|15837569|ref|NP_298257.1| excinuclease ABC subunit B [Xy... 683 0.0
gi|110802378|ref|YP_697624.1| excinuclease ABC, B subunit [... 683 0.0
gi|46445808|ref|YP_007173.1| excinuclease ABC subunit B [Ca... 683 0.0
gi|118046896|ref|ZP_01515541.1| excinuclease ABC, B subunit... 683 0.0
gi|71898922|ref|ZP_00681089.1| Excinuclease ABC, B subunit ... 683 0.0
gi|21231919|ref|NP_637836.1| excinuclease ABC subunit B [Xa... 683 0.0
gi|7766819|pdb|1D9X|A Chain A, Crystal Structure Of The Dna... 682 0.0
gi|93005567|ref|YP_580004.1| excinuclease ABC, B subunit [P... 682 0.0
gi|91774217|ref|YP_566909.1| excinuclease ABC, B subunit [M... 682 0.0
gi|71276421|ref|ZP_00652697.1| Excinuclease ABC, B subunit ... 682 0.0
gi|119717061|ref|YP_924026.1| excinuclease ABC, B subunit [... 682 0.0
gi|23099943|ref|NP_693409.1| excinuclease ABC subunit B [Oc... 682 0.0
gi|106887168|ref|ZP_01354484.1| excinuclease ABC, B subunit... 682 0.0
gi|56478529|ref|YP_160118.1| excinuclease ABC subunit B [Az... 682 0.0
gi|121997343|ref|YP_001002130.1| excinuclease ABC, B subuni... 682 0.0
gi|78048368|ref|YP_364543.1| excinuclease ABC subunit B [Xa... 682 0.0
gi|22299576|ref|NP_682823.1| excinuclease ABC subunit B [Th... 682 0.0
gi|148259176|ref|YP_001233303.1| excinuclease ABC, B subuni... 681 0.0
gi|18309285|ref|NP_561219.1| excinuclease ABC subunit B [Cl... 681 0.0
gi|71907632|ref|YP_285219.1| excinuclease ABC subunit B [De... 681 0.0
gi|117924009|ref|YP_864626.1| excinuclease ABC, B subunit [... 681 0.0
gi|24379265|ref|NP_721220.1| excinuclease ABC subunit B [St... 681 0.0
gi|87309481|ref|ZP_01091616.1| excinuclease ABC subunit B [... 681 0.0
gi|32475348|ref|NP_868342.1| excinuclease ABC subunit B [Rh... 681 0.0
gi|28199607|ref|NP_779921.1| excinuclease ABC subunit B [Xy... 681 0.0
gi|110799055|ref|YP_694760.1| excinuclease ABC, B subunit [... 681 0.0
gi|83589120|ref|YP_429129.1| excinuclease ABC, B subunit [M... 681 0.0
gi|156743469|ref|YP_001433598.1| excinuclease ABC, B subuni... 681 0.0
gi|21243355|ref|NP_642937.1| excinuclease ABC subunit B [Xa... 681 0.0
gi|56750968|ref|YP_171669.1| excinuclease ABC subunit B [Sy... 681 0.0
gi|89205031|ref|ZP_01183604.1| Excinuclease ABC, B subunit ... 681 0.0
gi|149190377|ref|ZP_01868649.1| excinuclease ABC subunit B ... 680 0.0
gi|153812682|ref|ZP_01965350.1| hypothetical protein RUMOBE... 680 0.0
gi|154506003|ref|ZP_02042741.1| hypothetical protein RUMGNA... 680 0.0
gi|81311790|sp|Q5GXX4|UVRB_XANOR UvrABC system protein B (P... 679 0.0
gi|5870855|gb|AAD46146.2|AF102847_1 excinuclease ABC subuni... 679 0.0
gi|17228627|ref|NP_485175.1| excinuclease ABC subunit B [No... 679 0.0
gi|81428136|ref|YP_395135.1| Excinuclease ABC, subunit B [L... 679 0.0
gi|49481649|ref|YP_039154.1| excinuclease ABC subunit B [Ba... 679 0.0
gi|65317138|ref|ZP_00390097.1| COG0556: Helicase subunit of... 679 0.0
gi|30265192|ref|NP_847569.1| excinuclease ABC subunit B [Ba... 679 0.0
gi|156864904|gb|EDO58335.1| hypothetical protein CLOL250_01... 678 0.0
gi|74317586|ref|YP_315326.1| excinuclease ABC subunit B [Th... 678 0.0
gi|75910876|ref|YP_325172.1| excinuclease ABC subunit B [An... 678 0.0
gi|122879246|ref|YP_201832.6| excinuclease ABC subunit B [X... 678 0.0
gi|57866394|ref|YP_188019.1| excinuclease ABC subunit B [St... 678 0.0
gi|91775673|ref|YP_545429.1| excinuclease ABC, B subunit [M... 677 0.0
gi|119509060|ref|ZP_01628211.1| excinuclease ABC subunit B ... 677 0.0
gi|73540754|ref|YP_295274.1| excinuclease ABC subunit B [Ra... 677 0.0
gi|84624686|ref|YP_452058.1| excinuclease ABC subunit B [Xa... 677 0.0
gi|47567376|ref|ZP_00238089.1| excinuclease ABC, B subunit ... 677 0.0
gi|52145209|ref|YP_086431.1| excinuclease ABC subunit B [Ba... 677 0.0
gi|73663268|ref|YP_302049.1| excinuclease ABC subunit B [St... 677 0.0
gi|89897604|ref|YP_521091.1| hypothetical protein DSY4858 [... 677 0.0
gi|116670617|ref|YP_831550.1| excinuclease ABC, B subunit [... 676 0.0
gi|109648100|ref|ZP_01372003.1| excinuclease ABC, B subunit... 676 0.0
gi|30023201|ref|NP_834832.1| excinuclease ABC subunit B [Ba... 676 0.0
gi|116625433|ref|YP_827589.1| excinuclease ABC, B subunit [... 676 0.0
gi|94309964|ref|YP_583174.1| excinuclease ABC, B subunit [R... 676 0.0
gi|88602451|ref|YP_502629.1| excinuclease ABC, B subunit [M... 676 0.0
gi|123967072|ref|YP_001012153.1| Excinuclease ABC subunit B... 676 0.0
gi|118028393|ref|ZP_01499856.1| excinuclease ABC, B subunit... 676 0.0
gi|88856202|ref|ZP_01130862.1| excinuclease ABC subunit B [... 675 0.0
gi|76259521|ref|ZP_00767169.1| Excinuclease ABC, B subunit ... 675 0.0
gi|152977385|ref|YP_001376902.1| excinuclease ABC, B subuni... 675 0.0
gi|119897902|ref|YP_933115.1| excinuclease ABC subunit B [A... 675 0.0
gi|146329703|ref|YP_001209468.1| excinuclease ABC, B subuni... 674 0.0
gi|113476281|ref|YP_722342.1| excinuclease ABC, B subunit [... 674 0.0
gi|67640579|ref|ZP_00439380.1| COG0556: Helicase subunit of... 674 0.0
gi|99912913|ref|ZP_01319594.1| hypothetical protein Bpse1_0... 674 0.0
gi|100234376|ref|ZP_01335281.1| hypothetical protein Bpse4_... 674 0.0
gi|34498607|ref|NP_902822.1| excinuclease ABC subunit B [Ch... 674 0.0
gi|27467459|ref|NP_764096.1| excinuclease ABC subunit B [St... 674 0.0
gi|76818802|ref|YP_337072.1| excinuclease ABC subunit B [Bu... 674 0.0
gi|90962150|ref|YP_536066.1| Excinuclease ABC subunit B [La... 674 0.0
gi|53717211|ref|YP_105572.1| excinuclease ABC subunit B [Bu... 674 0.0
gi|145595652|ref|YP_001159949.1| excinuclease ABC, B subuni... 674 0.0
gi|83592469|ref|YP_426221.1| Excinuclease ABC, B subunit [R... 674 0.0
gi|116748247|ref|YP_844934.1| excinuclease ABC, B subunit [... 673 0.0
gi|42784318|ref|NP_981565.1| excinuclease ABC subunit B [Ba... 673 0.0
gi|113867172|ref|YP_725661.1| Excinuclease ABC, helicase su... 673 0.0
gi|113937697|ref|ZP_01423571.1| excinuclease ABC, B subunit... 673 0.0
gi|148241173|ref|YP_001226330.1| Helicase subunit of the DN... 673 0.0
gi|50842290|ref|YP_055517.1| excinuclease ABC subunit B [Pr... 673 0.0
gi|15672544|ref|NP_266718.1| excinuclease ABC subunit B [La... 672 0.0
gi|84519038|ref|ZP_01006387.1| excinuclease ABC subunit B [... 672 0.0
gi|116511361|ref|YP_808577.1| Helicase subunit of the DNA e... 672 0.0
gi|125623401|ref|YP_001031884.1| UvrABC system protein B [L... 672 0.0
gi|154483753|ref|ZP_02026201.1| hypothetical protein EUBVEN... 672 0.0
gi|82750463|ref|YP_416204.1| exinuclease ABC subunit B [Sta... 672 0.0
gi|75759008|ref|ZP_00739116.1| Excinuclease ABC subunit B [... 672 0.0
gi|119488976|ref|ZP_01621911.1| excinuclease ABC subunit B ... 672 0.0
gi|118039129|ref|ZP_01510531.1| excinuclease ABC, B subunit... 671 0.0
gi|33862205|ref|NP_893766.1| excinuclease ABC subunit B [Pr... 671 0.0
gi|87160625|ref|YP_493443.1| excinuclease ABC, B subunit [S... 671 0.0
gi|49483015|ref|YP_040239.1| excinuclease ABC subunit B [St... 671 0.0
gi|83717423|ref|YP_440229.1| excinuclease ABC, B subunit [B... 671 0.0
gi|70727132|ref|YP_254046.1| excinuclease ABC subunit B [St... 671 0.0
gi|126697177|ref|YP_001092063.1| Excinuclease ABC subunit B... 671 0.0
gi|124026822|ref|YP_001015937.1| Excinuclease ABC subunit B... 671 0.0
gi|118497766|ref|YP_898816.1| excinuclease ABC, subunit B [... 671 0.0
gi|67459452|ref|YP_247076.1| excinuclease ABC subunit B [Ri... 671 0.0
gi|58040289|ref|YP_192253.1| excinuclease ABC subunit B [Gl... 671 0.0
gi|15923748|ref|NP_371282.1| excinuclease ABC subunit B [St... 671 0.0
gi|148267218|ref|YP_001246161.1| excinuclease ABC, B subuni... 671 0.0
gi|21282449|ref|NP_645537.1| excinuclease ABC subunit B [St... 670 0.0
gi|118733815|ref|ZP_01582324.1| excinuclease ABC, B subunit... 670 0.0
gi|149198552|ref|ZP_01875596.1| excinuclease ABC subunit B ... 670 0.0
gi|84489383|ref|YP_447615.1| UvrB [Methanosphaera stadtmana... 670 0.0
gi|72383085|ref|YP_292440.1| excinuclease ABC subunit B [Pr... 670 0.0
gi|119961329|ref|YP_947815.1| excinuclease ABC, B subunit [... 670 0.0
gi|118719361|ref|ZP_01571891.1| excinuclease ABC, B subunit... 670 0.0
gi|123969390|ref|YP_001010248.1| Excinuclease ABC subunit B... 669 0.0
gi|148653352|ref|YP_001280445.1| excinuclease ABC, B subuni... 669 0.0
gi|148381328|ref|YP_001255869.1| excinuclease ABC subunit B... 669 0.0
gi|114320247|ref|YP_741930.1| excinuclease ABC, B subunit [... 669 0.0
gi|107028610|ref|YP_625705.1| excinuclease ABC, B subunit [... 669 0.0
gi|126642540|ref|YP_001085524.1| excinuclease ABC subunit B... 669 0.0
gi|153931681|ref|YP_001385704.1| excinuclease ABC, B subuni... 669 0.0
gi|78357139|ref|YP_388588.1| excinuclease ABC, B subunit [D... 668 0.0
gi|121594498|ref|YP_986394.1| excinuclease ABC, B subunit [... 668 0.0
gi|51246617|ref|YP_066501.1| excinuclease ABC subunit B [De... 668 0.0
gi|78780126|ref|YP_398238.1| excinuclease ABC, B subunit [P... 668 0.0
gi|134296394|ref|YP_001120129.1| excinuclease ABC, B subuni... 667 0.0
gi|94986685|ref|YP_594618.1| Helicase subunit of the DNA ex... 667 0.0
gi|134302179|ref|YP_001122148.1| excinuclease ABC, B subuni... 667 0.0
gi|151570851|gb|EDN36505.1| excinuclease ABC subunit B [Fra... 667 0.0
gi|78067007|ref|YP_369776.1| excinuclease ABC subunit B [Bu... 667 0.0
gi|114328889|ref|YP_746046.1| excinuclease ABC subunit B [G... 667 0.0
gi|15892189|ref|NP_359903.1| excinuclease ABC subunit B [Ri... 667 0.0
gi|118709801|ref|ZP_01562382.1| excinuclease ABC, B subunit... 667 0.0
gi|53731904|ref|ZP_00153319.2| COG0556: Helicase subunit of... 667 0.0
gi|151220938|ref|YP_001331760.1| excinuclease ABC subunit B... 667 0.0
gi|91782672|ref|YP_557878.1| Excinuclease ABC, B subunit [B... 667 0.0
gi|146296990|ref|YP_001180761.1| excinuclease ABC, B subuni... 667 0.0
gi|119881262|ref|ZP_01647558.1| excinuclease ABC, B subunit... 667 0.0
gi|88797993|ref|ZP_01113580.1| excinuclease ABC subunit B [... 667 0.0
gi|15606895|ref|NP_214276.1| excinuclease ABC subunit B [Aq... 667 0.0
gi|102191498|ref|ZP_01347310.1| hypothetical protein RcanM_... 667 0.0
gi|89900959|ref|YP_523430.1| excinuclease ABC, B subunit [R... 666 0.0
gi|83312902|ref|YP_423166.1| Helicase subunit of the DNA ex... 666 0.0
gi|124872472|gb|EAY64188.1| Excinuclease ABC, B subunit [Bu... 666 0.0
gi|50954810|ref|YP_062098.1| excinuclease ABC subunit B [Le... 666 0.0
gi|148927424|ref|ZP_01810941.1| excinuclease ABC, B subunit... 666 0.0
gi|124894509|gb|EAY68389.1| Helicase subunit of the DNA exc... 666 0.0
gi|56708262|ref|YP_170158.1| excinuclease ABC subunit B [Fr... 666 0.0
gi|23016719|ref|ZP_00056472.1| COG0556: Helicase subunit of... 666 0.0
gi|89256132|ref|YP_513494.1| DNA excision repair enzyme, su... 666 0.0
gi|151572295|gb|EDN37949.1| DNA excision repair enzyme [Fra... 666 0.0
gi|84496576|ref|ZP_00995430.1| excinuclease ABC subunit B [... 666 0.0
gi|25989628|gb|AAN28958.1| UvrB [Corynebacterium glutamicum] 666 0.0
gi|84362300|ref|ZP_00986928.1| COG0556: Helicase subunit of... 666 0.0
gi|53687294|ref|ZP_00106928.2| COG0556: Helicase subunit of... 665 0.0
gi|38233744|ref|NP_939511.1| excinuclease ABC subunit B [Co... 665 0.0
gi|62261612|gb|AAX78002.1| unknown protein [synthetic const... 665 0.0
gi|118696577|ref|ZP_01554658.1| excinuclease ABC, B subunit... 665 0.0
gi|68535902|ref|YP_250607.1| excinuclease ABC, subunit B [C... 665 0.0
gi|84355165|ref|ZP_00980054.1| COG0556: Helicase subunit of... 665 0.0
gi|134095424|ref|YP_001100499.1| ATP-dependent DNA excision... 665 0.0
gi|15678470|ref|NP_275585.1| excinuclease ABC subunit B [Me... 665 0.0
gi|15794438|ref|NP_284260.1| excinuclease ABC subunit B [Ne... 665 0.0
gi|33862344|ref|NP_893904.1| excinuclease ABC subunit B [Pr... 665 0.0
gi|115352299|ref|YP_774138.1| excinuclease ABC, B subunit [... 664 0.0
gi|34580788|ref|ZP_00142268.1| excinuclease ABC subunit B [... 663 0.0
gi|124516185|gb|EAY57693.1| Exinuclease ABC B subunit, UvrB... 663 0.0
gi|148643639|ref|YP_001274152.1| excinuclease ABC, subunit ... 663 0.0
gi|109728178|ref|ZP_01379589.1| hypothetical protein RbelO_... 663 0.0
gi|91205909|ref|YP_538264.1| Excinuclease ABC subunit B [Ri... 663 0.0
gi|145295505|ref|YP_001138326.1| hypothetical protein cgR_1... 663 0.0
gi|75676679|ref|YP_319100.1| excinuclease ABC subunit B [Ni... 663 0.0
gi|154246683|ref|YP_001417641.1| excinuclease ABC, B subuni... 663 0.0
gi|118591823|ref|ZP_01549218.1| DEAD/DEAH box helicase:Heli... 662 0.0
gi|152979775|ref|YP_001352938.1| excinuclease ABC subunit B... 662 0.0
gi|59801006|ref|YP_207718.1| excinuclease ABC subunit B [Ne... 662 0.0
gi|2499099|sp|Q50939|UVRB_NEIGO UvrABC system protein B (Pr... 662 0.0
gi|2909345|emb|CAA74675.1| ultraviolet resistance protein [... 662 0.0
gi|121635041|ref|YP_975286.1| excinuclease ABC subunit B [N... 662 0.0
gi|153008983|ref|YP_001370198.1| excinuclease ABC, B subuni... 662 0.0
gi|1351387|sp|P10125|UVRB_MICLU UvrABC system protein B (Pr... 662 0.0
gi|91788049|ref|YP_549001.1| excinuclease ABC, B subunit [P... 662 0.0
gi|117928313|ref|YP_872864.1| excinuclease ABC, B subunit [... 661 0.0
gi|15604076|ref|NP_220591.1| excinuclease ABC subunit B [Ri... 661 0.0
gi|41407433|ref|NP_960269.1| excinuclease ABC subunit B [My... 661 0.0
gi|119713691|gb|ABL97741.1| excinuclease ABC B subunit [unc... 661 0.0
gi|150385439|ref|ZP_01924062.1| excinuclease ABC, B subunit... 661 0.0
gi|19552585|ref|NP_600587.1| excinuclease ABC subunit B [Co... 661 0.0
gi|91978448|ref|YP_571107.1| excinuclease ABC, B subunit [R... 660 0.0
gi|16331511|ref|NP_442239.1| excinuclease ABC subunit B [Sy... 660 0.0
gi|87123270|ref|ZP_01079121.1| excinuclease ABC, B subunit ... 660 0.0
gi|39937403|ref|NP_949679.1| excinuclease ABC subunit B [Rh... 660 0.0
gi|154150649|ref|YP_001404267.1| excinuclease ABC, B subuni... 660 0.0
gi|134101920|ref|YP_001107581.1| excinuclease ABC, subunit ... 660 0.0
gi|111017990|ref|YP_700962.1| excision nuclease ABC subunit... 660 0.0
gi|85716011|ref|ZP_01046988.1| excinuclease ABC subunit B [... 660 0.0
gi|113952727|ref|YP_729312.1| excinuclease ABC, B subunit [... 660 0.0
gi|86751253|ref|YP_487749.1| excinuclease ABC, B subunit [R... 660 0.0
gi|118463533|ref|YP_882325.1| excinuclease ABC, B subunit [... 660 0.0
gi|149927877|ref|ZP_01916128.1| excinuclease ABC subunit B ... 660 0.0
gi|52698579|ref|ZP_00339987.1| COG0556: Helicase subunit of... 659 0.0
gi|15841088|ref|NP_336125.1| excinuclease ABC subunit B [My... 659 0.0
gi|124267474|ref|YP_001021478.1| putative excinuclease ABC ... 659 0.0
gi|62290400|ref|YP_222193.1| excinuclease ABC subunit B [Br... 659 0.0
gi|15677197|ref|NP_274350.1| excinuclease ABC subunit B [Ne... 659 0.0
>gi|34540208|ref|NP_904687.1| excinuclease ABC subunit B [Porphyromonas gingivalis W83]
gi|34396520|gb|AAQ65586.1| excinuclease ABC, B subunit [Porphyromonas gingivalis W83]
Length = 678
Score = 1326 bits (3432), Expect = 0.0, Method: Composition-based stats.
Identities = 678/678 (100%), Positives = 678/678 (100%)
Query: 1 MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLV 60
MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLV
Sbjct: 1 MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLV 60
Query: 61 LSHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKL 120
LSHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKL
Sbjct: 61 LSHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKL 120
Query: 121 RLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYY 180
RLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYY
Sbjct: 121 RLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYY 180
Query: 181 TNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS 240
TNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS
Sbjct: 181 TNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS 240
Query: 241 ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRE 300
ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRE
Sbjct: 241 ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRE 300
Query: 301 LGYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKE 360
LGYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKE
Sbjct: 301 LGYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKE 360
Query: 361 NLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLL 420
NLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLL
Sbjct: 361 NLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLL 420
Query: 421 DPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD 480
DPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD
Sbjct: 421 DPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD 480
Query: 481 VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 540
VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA
Sbjct: 481 VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 540
Query: 541 GRAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGE 600
GRAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGE
Sbjct: 541 GRAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGE 600
Query: 601 GDVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAA 660
GDVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAA
Sbjct: 601 GDVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAA 660
Query: 661 RLRDEAARLEKKLEQLTA 678
RLRDEAARLEKKLEQLTA
Sbjct: 661 RLRDEAARLEKKLEQLTA 678
>gi|154494931|ref|ZP_02033936.1| hypothetical protein PARMER_03975 [Parabacteroides merdae ATCC
43184]
gi|154085481|gb|EDN84526.1| hypothetical protein PARMER_03975 [Parabacteroides merdae ATCC
43184]
Length = 675
Score = 996 bits (2575), Expect = 0.0, Method: Composition-based stats.
Identities = 489/673 (72%), Positives = 573/673 (85%), Gaps = 3/673 (0%)
Query: 1 MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLV 60
M+++L+S F PTGDQPEAI L GI G+P QTLLGVTGSGKTFT+ANV+ V +PTL+
Sbjct: 1 MNFELSSPFSPTGDQPEAIAALSDGIKSGVPFQTLLGVTGSGKTFTIANVIKEVRKPTLI 60
Query: 61 LSHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKL 120
LSHNKTLAAQLY EFKAFFP NAVEYFVSYYDYYQPEAYLP TDTYIEKD+ IN EI+KL
Sbjct: 61 LSHNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYLPTTDTYIEKDLQINDEIDKL 120
Query: 121 RLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYY 180
RLRATASLLSGRKDV+VVSSVSCLYGMA+P AF+EKV+ L G R DRD +R V++ Y
Sbjct: 121 RLRATASLLSGRKDVIVVSSVSCLYGMADPTAFAEKVVHLEKGMRIDRDKLLRRFVDALY 180
Query: 181 TNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS 240
NNK+EF G FRV GD+VDIFPA+E +DG AYR+EFWD EV+R+S+FDP+TG+E
Sbjct: 181 VNNKIEFNRGCFRVNGDTVDIFPAIETFDGAAYRIEFWDDEVDRISSFDPQTGQEIDEQD 240
Query: 241 ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRE 300
EL IYP NLFVTT+E+++ A+G+IDVDLG QV+FL+EIGKPYEAKRLYERVT+DLEMIRE
Sbjct: 241 ELNIYPTNLFVTTQERINTAIGQIDVDLGTQVNFLREIGKPYEAKRLYERVTFDLEMIRE 300
Query: 301 LGYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKE 360
LG+CSGIENYSRYFDGR AGERPFCLLDYFP+DFLLV+DESHVTIPQIRAMYGGD SRK+
Sbjct: 301 LGHCSGIENYSRYFDGRQAGERPFCLLDYFPKDFLLVVDESHVTIPQIRAMYGGDYSRKK 360
Query: 361 NLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLL 420
NLV+YGFRLPAA+DNRPL FDEFE+LTP +Y+SATPADYEL +SEG++V+Q+IRPTGLL
Sbjct: 361 NLVDYGFRLPAAMDNRPLTFDEFESLTPLAIYVSATPADYELEKSEGIVVDQVIRPTGLL 420
Query: 421 DPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD 480
DP+I+V+PT NQ+DDLMEEI + ERVLVTTLTKRMAEEL+ YL R GI YIHSD
Sbjct: 421 DPVIEVRPTLNQIDDLMEEITQRAAVDERVLVTTLTKRMAEELTAYLTRMGIRCNYIHSD 480
Query: 481 VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 540
VDTLER++IM+DLRKG++D LIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA
Sbjct: 481 VDTLERIQIMDDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 540
Query: 541 GRAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGE 600
GRAAR+++G+VIFYADKITDSM+LTMDETARRR KQLAYNE HGITP+Q++KNS ++ E
Sbjct: 541 GRAARNVNGKVIFYADKITDSMRLTMDETARRREKQLAYNEKHGITPKQVIKNSVSLVAE 600
Query: 601 GDVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAA 660
E AY+E + ADP+ Y+++ +LE I TKKQM+ AAK+LDF+EAA
Sbjct: 601 KQQPV---TGEPYAYVEPEPSLVADPVVQYMNRKQLEKAIERTKKQMMEAAKKLDFIEAA 657
Query: 661 RLRDEAARLEKKL 673
+ RDE +LE L
Sbjct: 658 QFRDELVKLEDLL 670
>gi|150006946|ref|YP_001301689.1| excinuclease ABC, B subunit [Parabacteroides distasonis ATCC 8503]
gi|149935370|gb|ABR42067.1| excinuclease ABC, B subunit [Parabacteroides distasonis ATCC 8503]
Length = 673
Score = 994 bits (2570), Expect = 0.0, Method: Composition-based stats.
Identities = 489/674 (72%), Positives = 575/674 (85%), Gaps = 5/674 (0%)
Query: 1 MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLV 60
M+++++S F PTGDQPEAI L +GI G+P QTLLGVTGSGKTFT+ANV+ V RPTL+
Sbjct: 1 MNFEISSSFSPTGDQPEAIAALSEGIKSGVPFQTLLGVTGSGKTFTIANVIKEVQRPTLI 60
Query: 61 LSHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKL 120
LSHNKTLAAQLY EFKAFFP NAVEYFVSYYDYYQPEAYLP TDTYIEKD+AIN EI+KL
Sbjct: 61 LSHNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYLPSTDTYIEKDLAINEEIDKL 120
Query: 121 RLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYY 180
RLRATASLLSGRKDV+VVSSVSCLYGMA+P AF+EKV L G R DRD +R V++ Y
Sbjct: 121 RLRATASLLSGRKDVIVVSSVSCLYGMADPTAFAEKVTHLERGMRIDRDKLLRRFVDALY 180
Query: 181 TNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS 240
NNK+EF+SG FRV GD+VDIFPA+E +DG+AYR+EFWD E++R+S+F+P TG EY
Sbjct: 181 VNNKLEFKSGCFRVNGDTVDIFPAIETFDGMAYRIEFWDDEIDRISSFNPLTGEEYDEQD 240
Query: 241 ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRE 300
EL IYP NLFVTT+E+++ A+G+IDVDLG QV+FLKEIGKP+EAKRLYERVT+DLEMIRE
Sbjct: 241 ELNIYPTNLFVTTQERINMAIGQIDVDLGTQVNFLKEIGKPFEAKRLYERVTFDLEMIRE 300
Query: 301 LGYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKE 360
LG+CSGIENYSRYFDGR AG+RPFCLLDYFP+DFLLV+DESHVTIPQIRAMYGGD +RK+
Sbjct: 301 LGHCSGIENYSRYFDGRAAGDRPFCLLDYFPKDFLLVVDESHVTIPQIRAMYGGDYARKK 360
Query: 361 NLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLL 420
NLVEYGFRLP+A+DNRPL FDEFE+LTP +Y+SATPADYEL +SEGV+VEQ+IRPTGLL
Sbjct: 361 NLVEYGFRLPSAMDNRPLTFDEFESLTPLGIYVSATPADYELIKSEGVVVEQVIRPTGLL 420
Query: 421 DPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD 480
DPIIDV+P+ NQ+DDLMEEI + K ERVLVTTLTKRMAEEL+ Y+ R G+ YIHSD
Sbjct: 421 DPIIDVRPSLNQIDDLMEEITQRSAKDERVLVTTLTKRMAEELTTYMTRMGVRCNYIHSD 480
Query: 481 VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 540
VDTLERV+IM+DLR G++D LIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA
Sbjct: 481 VDTLERVQIMDDLRNGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 540
Query: 541 GRAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGE 600
GRAAR+++G+VIFYADKIT SMQ TMDET RRR KQ+AYNEAHGITP+Q++KNS ++ E
Sbjct: 541 GRAARNVNGKVIFYADKITASMQQTMDETNRRREKQMAYNEAHGITPKQVMKNSVSMLAE 600
Query: 601 GDVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAA 660
Q E AYIE + ADP+ Y+++ +LE I T+KQM AAK+LDF+EAA
Sbjct: 601 K-----QQTAEPYAYIEPEPSLVADPVVQYMNRTQLEKAIERTRKQMTEAAKKLDFIEAA 655
Query: 661 RLRDEAARLEKKLE 674
+ RDE +LE L+
Sbjct: 656 QFRDELVKLEDLLK 669
>gi|29345980|ref|NP_809483.1| excinuclease ABC subunit B [Bacteroides thetaiotaomicron VPI-5482]
gi|81842293|sp|Q8AA95|UVRB_BACTN UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
gi|29337874|gb|AAO75677.1| excinuclease ABC subunit B [Bacteroides thetaiotaomicron VPI-5482]
Length = 677
Score = 874 bits (2259), Expect = 0.0, Method: Composition-based stats.
Identities = 459/677 (67%), Positives = 557/677 (82%), Gaps = 5/677 (0%)
Query: 1 MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLV 60
M+++LTS +KPTGDQPEAI QL +G+ +G+PAQTLLGVTGSGKTFT+ANV+A +N+PTL+
Sbjct: 1 MNFELTSAYKPTGDQPEAIAQLTEGVLQGVPAQTLLGVTGSGKTFTIANVIANINKPTLI 60
Query: 61 LSHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKL 120
LSHNKTLAAQLY EFK FFP NAVEY+VSYYDYYQPEAYLP +DTYIEKD+AIN EI+KL
Sbjct: 61 LSHNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPNSDTYIEKDLAINDEIDKL 120
Query: 121 RLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYY 180
RL AT+SLLSGRKDV+VVSSVSC+YGM NP F + VI + G+ DR+ F+R LV+S Y
Sbjct: 121 RLAATSSLLSGRKDVVVVSSVSCIYGMGNPSDFYKNVIEIERGRMLDRNVFLRRLVDSLY 180
Query: 181 TNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS 240
N ++ GNFRVKGD+VDIF A Y RV FW E++ + DP TG
Sbjct: 181 VRNDIDLNRGNFRVKGDTVDIFLA---YSDTLLRVTFWGDEIDGIEEVDPITGVTTAPFE 237
Query: 241 ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRE 300
KIYPANLF+TTKE RA+ +I+ DL QV F + IGK YEAKRLYERVTYD+EMIRE
Sbjct: 238 AYKIYPANLFMTTKEATLRAIHEIEDDLTKQVAFFESIGKEYEAKRLYERVTYDMEMIRE 297
Query: 301 LGYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKE 360
LG+CSGIENYSRYFDGR AG RP+CLLD+FP+DFLLVIDESHV++PQ+RAMYGGDR+RK
Sbjct: 298 LGHCSGIENYSRYFDGRAAGTRPYCLLDFFPDDFLLVIDESHVSVPQVRAMYGGDRARKI 357
Query: 361 NLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLL 420
NLVEYGFRLPAA+DNRPL+F+EFE +T + +Y+SATPA+YEL +SEG++VEQ+IRPTGLL
Sbjct: 358 NLVEYGFRLPAAMDNRPLKFEEFEEMTKQVIYVSATPAEYELIQSEGIVVEQVIRPTGLL 417
Query: 421 DPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD 480
DP+I+V+P+ NQ+DDLMEEI IEK+ERVLVTTLTKRMAEEL+EYLL + + YIHSD
Sbjct: 418 DPVIEVRPSLNQIDDLMEEIQLRIEKEERVLVTTLTKRMAEELTEYLLNNNVRCNYIHSD 477
Query: 481 VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 540
VDTLERV+IM+DLR+GVYD LIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA
Sbjct: 478 VDTLERVKIMDDLRQGVYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 537
Query: 541 GRAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVK-NSAAIWG 599
GRAAR+++G+VI YADKITDSM+LT+DET RRR KQLAYNEA+GITPQQI K + +++G
Sbjct: 538 GRAARNVNGKVIMYADKITDSMRLTIDETNRRREKQLAYNEANGITPQQIKKARNLSVFG 597
Query: 600 EGDVSALQSDTESGAYIEESS-MVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLE 658
A + E AY+E SS +AADP+ Y+SK ++E I T+K M AAK+L+F+E
Sbjct: 598 SPGSEADELLKEKHAYVEPSSPNIAADPIVQYMSKAQMEKSIERTRKLMQEAAKKLEFIE 657
Query: 659 AARLRDEAARLEKKLEQ 675
AA+ R+E +LE +++
Sbjct: 658 AAQYRNELLKLEDLMKE 674
>gi|53713912|ref|YP_099904.1| excinuclease ABC subunit B [Bacteroides fragilis YCH46]
gi|81824991|sp|Q64T09|UVRB_BACFR UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
gi|52216777|dbj|BAD49370.1| excinuclease ABC subunit B [Bacteroides fragilis YCH46]
Length = 677
Score = 870 bits (2249), Expect = 0.0, Method: Composition-based stats.
Identities = 458/679 (67%), Positives = 557/679 (82%), Gaps = 10/679 (1%)
Query: 1 MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLV 60
M+++LTS +KPTGDQPEAI QL +G+ EG+PAQTLLGVTGSGKTFT+ANV+A +N+PTL+
Sbjct: 1 MNFELTSAYKPTGDQPEAIAQLTEGVLEGVPAQTLLGVTGSGKTFTIANVIANINKPTLI 60
Query: 61 LSHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKL 120
LSHNKTLAAQLY EFK FFP NAVEY+VSYYDYYQPEAYLP +DTYIEKD+AIN EI+KL
Sbjct: 61 LSHNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKL 120
Query: 121 RLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYY 180
RL AT++LLSGRKDV+VVSSVSC+YGM NP F VI + G+ +R+ F+R LV+S Y
Sbjct: 121 RLAATSALLSGRKDVVVVSSVSCIYGMGNPSDFYNNVIEIERGRTINRNVFLRRLVDSLY 180
Query: 181 TNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS 240
N +E GNFRVKGD+VDI+ A Y RV FW E++ + DP +G
Sbjct: 181 MRNDIELNRGNFRVKGDTVDIYLA---YSDNLLRVTFWGDEIDGIEEVDPVSGVTIAPFE 237
Query: 241 ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRE 300
KIYPANLF+TTKE RA+ +I+ DL QV + + IGK YEAKRLYERVTYD+EMIRE
Sbjct: 238 AYKIYPANLFMTTKEATLRAIHEIEDDLTKQVAYFESIGKEYEAKRLYERVTYDMEMIRE 297
Query: 301 LGYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKE 360
LG+CSGIENYSRYFDGR AG RP+CLLD+FP+DFL+VIDESHV++PQIRAMYGGDR+RK
Sbjct: 298 LGHCSGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKI 357
Query: 361 NLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLL 420
NLVEYGFRLPAA+DNRPL+F+EFE++ + +Y+SATPADYEL +SEG++VEQ+IRPTGLL
Sbjct: 358 NLVEYGFRLPAAMDNRPLKFEEFESMAKQVIYVSATPADYELVQSEGIVVEQVIRPTGLL 417
Query: 421 DPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD 480
DP+I+V+P+ NQ+DDLMEEI IEK+ER+LVTTLTKRMAEEL+EYLL + + YIHSD
Sbjct: 418 DPVIEVRPSLNQIDDLMEEIQIRIEKEERILVTTLTKRMAEELTEYLLNNNVRCNYIHSD 477
Query: 481 VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 540
VDTLERV+IM+DLR+GVYD LIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA
Sbjct: 478 VDTLERVKIMDDLRQGVYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 537
Query: 541 GRAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVK-NSAAIWG 599
GRAAR+++G VI YADKITDSM+LT+DET RRR KQLAYNE HGITPQQI K + +++G
Sbjct: 538 GRAARNVNGMVIMYADKITDSMRLTIDETNRRREKQLAYNEEHGITPQQIKKARNLSVFG 597
Query: 600 EGDVSALQSDTESG--AYIEESS-MVAADPLADYLSKPKLEALIASTKKQMLAAAKELDF 656
G A DT+ G AY+E SS +AADP+ Y+SK +LE + T+K M AAK+L+F
Sbjct: 598 NG---AETEDTQKGTRAYVEPSSPNIAADPVVQYMSKTQLEKSMERTRKLMQEAAKKLEF 654
Query: 657 LEAARLRDEAARLEKKLEQ 675
+EAA+ RDE ++E +++
Sbjct: 655 IEAAQYRDELLKMEDLMKE 673
>gi|60682121|ref|YP_212265.1| excinuclease ABC subunit B [Bacteroides fragilis NCTC 9343]
gi|81314815|sp|Q5LC24|UVRB_BACFN UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
gi|60493555|emb|CAH08342.1| UvrABC SOS-repair system protein B [Bacteroides fragilis NCTC 9343]
Length = 677
Score = 870 bits (2249), Expect = 0.0, Method: Composition-based stats.
Identities = 459/679 (67%), Positives = 557/679 (82%), Gaps = 10/679 (1%)
Query: 1 MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLV 60
M+++LTS +KPTGDQPEAI QL +G+ EG+PAQTLLGVTGSGKTFT+ANV+A +N+PTL+
Sbjct: 1 MNFELTSAYKPTGDQPEAIAQLTEGVLEGVPAQTLLGVTGSGKTFTIANVIANINKPTLI 60
Query: 61 LSHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKL 120
LSHNKTLAAQLY EFK FFP NAVEY+VSYYDYYQPEAYLP +DTYIEKD+AIN EI+KL
Sbjct: 61 LSHNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKL 120
Query: 121 RLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYY 180
RL AT++LLSGRKDV+VVSSVSC+YGM NP F VI + G+ +R+ F+R LV+S Y
Sbjct: 121 RLAATSALLSGRKDVVVVSSVSCIYGMGNPSDFYNNVIEIERGRTINRNVFLRRLVDSLY 180
Query: 181 TNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS 240
N +E GNFRVKGD+VDI+ A Y RV FW E++ + DP +G
Sbjct: 181 MRNDIELNRGNFRVKGDTVDIYLA---YSDNLLRVTFWGDEIDGIEEVDPVSGVTIAPFE 237
Query: 241 ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRE 300
KIYPANLF+TTKE RA+ +I+ DL QV + + IGK YEAKRLYERVTYD+EMIRE
Sbjct: 238 AYKIYPANLFMTTKEATLRAIHEIEDDLTKQVAYFESIGKEYEAKRLYERVTYDMEMIRE 297
Query: 301 LGYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKE 360
LG+CSGIENYSRYFDGR AG RP+CLLD+FP+DFL+VIDESHV++PQIRAMYGGDR+RK
Sbjct: 298 LGHCSGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKI 357
Query: 361 NLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLL 420
NLVEYGFRLPAA+DNRPL+F+EFE++ + +Y+SATPADYEL +SEG++VEQ+IRPTGLL
Sbjct: 358 NLVEYGFRLPAAMDNRPLKFEEFESMAKQVIYVSATPADYELVQSEGIVVEQVIRPTGLL 417
Query: 421 DPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD 480
DP+I+V+P+ NQ+DDLMEEI IEK+ERVLVTTLTKRMAEEL+EYLL + + YIHSD
Sbjct: 418 DPVIEVRPSLNQIDDLMEEIQIRIEKEERVLVTTLTKRMAEELTEYLLNNNVRCNYIHSD 477
Query: 481 VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 540
VDTLERV+IM+DLR+GVYD LIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA
Sbjct: 478 VDTLERVKIMDDLRQGVYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 537
Query: 541 GRAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVK-NSAAIWG 599
GRAAR+++G VI YADKITDSM+LT+DET RRR KQLAYNE HGITPQQI K + +++G
Sbjct: 538 GRAARNVNGMVIMYADKITDSMRLTIDETNRRREKQLAYNEEHGITPQQIKKARNLSVFG 597
Query: 600 EGDVSALQSDTESG--AYIEESS-MVAADPLADYLSKPKLEALIASTKKQMLAAAKELDF 656
G A DT+ G AY+E SS +AADP+ Y+SK +LE + T+K M AAK+L+F
Sbjct: 598 NG---AETEDTQKGTRAYVEPSSPNIAADPVVQYMSKAQLEKSMERTRKLMQEAAKKLEF 654
Query: 657 LEAARLRDEAARLEKKLEQ 675
+EAA+ RDE ++E +++
Sbjct: 655 IEAAQYRDELLKMEDLMKE 673
>gi|156108523|gb|EDO10268.1| hypothetical protein BACOVA_03714 [Bacteroides ovatus ATCC 8483]
Length = 676
Score = 867 bits (2239), Expect = 0.0, Method: Composition-based stats.
Identities = 457/677 (67%), Positives = 556/677 (82%), Gaps = 6/677 (0%)
Query: 1 MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLV 60
M+Y+LTS +KPTGDQPEAI QL +G+ +G+PAQTLLGVTGSGKTFT+ANV+A +N+PTL+
Sbjct: 1 MNYELTSAYKPTGDQPEAIAQLTEGVLQGVPAQTLLGVTGSGKTFTIANVIANINKPTLI 60
Query: 61 LSHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKL 120
LSHNKTLAAQLY EFK FFP NAVEY+VSYYDYYQPEAYLP +DTYIEKD+AIN EI+KL
Sbjct: 61 LSHNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPNSDTYIEKDLAINDEIDKL 120
Query: 121 RLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYY 180
RL AT++LLSGRKDV+VVSSVSC+YGM NP F + VI + G+ DR+ F+R LV+S Y
Sbjct: 121 RLSATSALLSGRKDVVVVSSVSCIYGMGNPSDFYKNVIEIERGRMIDRNVFLRRLVDSLY 180
Query: 181 TNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS 240
N ++ GNFRVKGD+VDI+ A Y RV FW E++ + DP TG
Sbjct: 181 VRNDIDLNRGNFRVKGDTVDIYLA---YTDNLLRVTFWGDEIDGIEEVDPITGVTIAPFD 237
Query: 241 ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRE 300
KIYPANLF+TTKE RA+ +I+ DL QV F + IGK YEAKRLYERVTYD+EMIRE
Sbjct: 238 AYKIYPANLFMTTKEATLRAIHEIEDDLTKQVAFFESIGKEYEAKRLYERVTYDMEMIRE 297
Query: 301 LGYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKE 360
LG+CSGIENYSRYFDGR AG RP+CLLD+FP+DFL+VIDESHV++PQIRAMYGGDR+RK
Sbjct: 298 LGHCSGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKI 357
Query: 361 NLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLL 420
NLVEYGFRLPAA+DNRPL+F+EF+ + + +Y+SATPADYEL +SEG++VEQ+IRPTGLL
Sbjct: 358 NLVEYGFRLPAAMDNRPLKFEEFQEMAKQVIYVSATPADYELIQSEGIVVEQVIRPTGLL 417
Query: 421 DPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD 480
DPII+V+P+ NQ+DDLMEEI IEK+ERVLVTTLTKRMAEEL+EYLL + + YIHSD
Sbjct: 418 DPIIEVRPSLNQIDDLMEEIQLRIEKEERVLVTTLTKRMAEELAEYLLNNNVRCTYIHSD 477
Query: 481 VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 540
VDTLERV+IM+DLR+GVYD LIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA
Sbjct: 478 VDTLERVKIMDDLRQGVYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 537
Query: 541 GRAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVK-NSAAIWG 599
GRAAR+++G+VI YADK+TDSM+LT+DET RRR KQLAYNEA+GITPQQI K + +++G
Sbjct: 538 GRAARNVNGKVIMYADKMTDSMKLTIDETNRRREKQLAYNEANGITPQQIKKARNLSVFG 597
Query: 600 EGDVSALQSDTESGAYIEESS-MVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLE 658
A + E AY+E S+ +AADP+ Y+SK ++E I T+K M AAK+L+F+E
Sbjct: 598 NAK-EADELLKERHAYVEPSTPNIAADPIVQYMSKAQMEKSIERTRKLMQEAAKKLEFIE 656
Query: 659 AARLRDEAARLEKKLEQ 675
AA+ RDE +LE +++
Sbjct: 657 AAQYRDELLKLEDLMKE 673
>gi|153806678|ref|ZP_01959346.1| hypothetical protein BACCAC_00948 [Bacteroides caccae ATCC 43185]
gi|149131355|gb|EDM22561.1| hypothetical protein BACCAC_00948 [Bacteroides caccae ATCC 43185]
Length = 677
Score = 865 bits (2235), Expect = 0.0, Method: Composition-based stats.
Identities = 452/677 (66%), Positives = 553/677 (81%), Gaps = 5/677 (0%)
Query: 1 MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLV 60
M+++LTS +KPTGDQPEAI QL G+ +G+PAQTLLGVTGSGKTFT+ANV+A +N+PTL+
Sbjct: 1 MNFELTSAYKPTGDQPEAIAQLTDGVIQGLPAQTLLGVTGSGKTFTIANVIANINKPTLI 60
Query: 61 LSHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKL 120
LSHNKTLAAQLY EFK FFP NAVEY+VSYYDYYQPEAYLP +DTYIEKD+AIN EI+KL
Sbjct: 61 LSHNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPNSDTYIEKDLAINDEIDKL 120
Query: 121 RLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYY 180
RL AT++LLSGRKDV+VVSSVSC+YGM NP F + VI + G+ DR+ F+R LV+S Y
Sbjct: 121 RLAATSALLSGRKDVVVVSSVSCIYGMGNPSDFYKNVIEIERGRMLDRNVFLRRLVDSLY 180
Query: 181 TNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS 240
N ++ GNFRVKGD+VDI+ A Y RV FW E++ + DP TG
Sbjct: 181 VRNDIDLNRGNFRVKGDTVDIYLA---YTDNLLRVTFWGDEIDGIEEVDPVTGVTIAPFE 237
Query: 241 ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRE 300
KIYPANLF+TTKE RA+ +I+ DL QV F + IGK YEAKRLYERVTYD+EMIRE
Sbjct: 238 AYKIYPANLFMTTKEATLRAIHEIEDDLTKQVAFFESIGKEYEAKRLYERVTYDMEMIRE 297
Query: 301 LGYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKE 360
LG+CSGIENYSRYFDGR AG RP+CLLD+FP+DFL+VIDESHV++PQIRAMYGGDR+RK
Sbjct: 298 LGHCSGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKI 357
Query: 361 NLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLL 420
NLVEYGFRLPAA+DNRPL+F+EF + + +Y+SATPA+YEL +SEG++VEQ+IRPTGLL
Sbjct: 358 NLVEYGFRLPAAMDNRPLKFEEFAEMAKQVIYVSATPAEYELIQSEGIVVEQVIRPTGLL 417
Query: 421 DPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD 480
DPII+V+P+ NQ+DDLMEEI IEK ERVLVTTLTKRMAEEL+EYLL + + YIHSD
Sbjct: 418 DPIIEVRPSLNQIDDLMEEIQLRIEKSERVLVTTLTKRMAEELTEYLLNNNVRCNYIHSD 477
Query: 481 VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 540
VDTLERV+IM+DLR+G+YD LIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA
Sbjct: 478 VDTLERVKIMDDLRQGIYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 537
Query: 541 GRAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVK-NSAAIWG 599
GRAAR+++G+VI YAD++TDSM+LT+DET RRR KQLAYNEA+GITPQQI K + +++G
Sbjct: 538 GRAARNVNGKVIMYADRMTDSMKLTIDETNRRREKQLAYNEANGITPQQIKKARNLSVFG 597
Query: 600 EGDVSALQSDTESGAYIEESS-MVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLE 658
+ + E AY+E S+ +AADP+ Y+SK ++E I T+K M AAK+L+F+E
Sbjct: 598 NANSETEELLKEKHAYVEPSTPNIAADPVVQYMSKAQMEKSIERTRKLMQEAAKKLEFIE 657
Query: 659 AARLRDEAARLEKKLEQ 675
AA+ RDE +LE +++
Sbjct: 658 AAQYRDELLKLEDLMKE 674
>gi|150005555|ref|YP_001300299.1| UvrABC SOS-repair system protein B [Bacteroides vulgatus ATCC 8482]
gi|149933979|gb|ABR40677.1| UvrABC SOS-repair system protein B [Bacteroides vulgatus ATCC 8482]
Length = 677
Score = 861 bits (2224), Expect = 0.0, Method: Composition-based stats.
Identities = 452/677 (66%), Positives = 552/677 (81%), Gaps = 5/677 (0%)
Query: 1 MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLV 60
M+++L S ++PTGDQPEAI QL +G+ EG+PAQTLLGVTGSGKTFT+ANV+ +N+PTL+
Sbjct: 1 MNFELISEYQPTGDQPEAIAQLTEGVLEGVPAQTLLGVTGSGKTFTIANVIKNINKPTLI 60
Query: 61 LSHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKL 120
LSHNKTLAAQLYGEFK+FFP NAVEY+VSYYDYYQPEAYLP +DTYIEKD+AIN EI+KL
Sbjct: 61 LSHNKTLAAQLYGEFKSFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINEEIDKL 120
Query: 121 RLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYY 180
RL AT++LLSGRKDV+VVSSVSC+YGM NP F VI + G+ DR+ F+R LV+S Y
Sbjct: 121 RLAATSALLSGRKDVVVVSSVSCIYGMGNPSDFYNNVIEIKKGKLLDRNVFLRRLVDSLY 180
Query: 181 TNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS 240
N +E GNFRVKGD+VDI+ A Y RV FWD E++ + DP +G
Sbjct: 181 VRNDIELNRGNFRVKGDTVDIYLA---YSDNLLRVMFWDDEIDAIEEIDPISGIRLATFD 237
Query: 241 ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRE 300
E KIYPANLF+TTKE RA+ +I+ DL +V +E GK YEAKRLYERVTYD+EMIRE
Sbjct: 238 EYKIYPANLFMTTKESQLRAIHQIEDDLTKEVAKFEEEGKMYEAKRLYERVTYDMEMIRE 297
Query: 301 LGYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKE 360
LG+CSGIENYSRYFDGR+AG RP+CLLD+FP+DFL+VIDESHV++PQIRAMYGGDR+RK
Sbjct: 298 LGHCSGIENYSRYFDGRNAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKT 357
Query: 361 NLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLL 420
NLVEYGFR+ +A DNRPL+F+EF+ L + +Y+SATPADYEL SEG+IVEQ+IRPTGLL
Sbjct: 358 NLVEYGFRMESAFDNRPLKFEEFKELAKQVIYVSATPADYELVESEGIIVEQVIRPTGLL 417
Query: 421 DPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD 480
DP+I+V+P+ NQ+DDLMEEI + IEK+ERVLVTTLTKRMAEEL+EYLLR+ I YIHSD
Sbjct: 418 DPVIEVRPSLNQIDDLMEEIQQRIEKEERVLVTTLTKRMAEELTEYLLRNDIRCNYIHSD 477
Query: 481 VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 540
VDTLERV+IM++LR+GVYD L+GVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA
Sbjct: 478 VDTLERVKIMDELRQGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 537
Query: 541 GRAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVK-NSAAIWG 599
GRAAR+I+G+VI YAD++TDSM+ T+DET RRR KQLAYNE HGITP+QI + +AA+ G
Sbjct: 538 GRAARNINGKVIMYADRMTDSMKKTIDETNRRREKQLAYNEEHGITPKQIQRARNAALLG 597
Query: 600 EGDVSALQSDTESGAYIEESS-MVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLE 658
+ AYIE SS AADP+ Y++KP++E I T+K M AAK+L+F+E
Sbjct: 598 NNSNEVAGTTQGPKAYIEPSSDTTAADPIVQYMTKPQMEKTIERTRKLMQEAAKKLEFIE 657
Query: 659 AARLRDEAARLEKKLEQ 675
AA+ RDE +LE +++
Sbjct: 658 AAQYRDELLKLEDMMKE 674
>gi|156862298|gb|EDO55729.1| hypothetical protein BACUNI_00571 [Bacteroides uniformis ATCC 8492]
Length = 686
Score = 858 bits (2217), Expect = 0.0, Method: Composition-based stats.
Identities = 455/685 (66%), Positives = 549/685 (80%), Gaps = 17/685 (2%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
++LTS ++PTGDQPEAI QL +G+ EG+PAQTLLGVTGSGKTFT+ANV+A +N+PTL+LS
Sbjct: 4 FELTSAYQPTGDQPEAIAQLTEGVREGLPAQTLLGVTGSGKTFTIANVIANINKPTLILS 63
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
HNKTLAAQLY EFK FFP NAVEY+VSYYDYYQPEAYLP +DTYIEKD+AIN EI+KLRL
Sbjct: 64 HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 123
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT++LLSGRKDV+VVSSVSC+YGM NP F VI + G+ R+ F+R LV+S Y
Sbjct: 124 AATSALLSGRKDVVVVSSVSCIYGMGNPADFYNNVIEVQQGKNFSRNVFLRRLVDSLYVR 183
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N ++ GNFRVKGD+VDI+ A Y RV FW EV+ + DP +G
Sbjct: 184 NDIDLNRGNFRVKGDTVDIYLA---YADNLLRVTFWGDEVDSIEEVDPMSGVTVAKFDAY 240
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
KIYPANLF+TTKE RA+ +I+ DL QV + + G+P+EAKRL ERVTYD+EMIRELG
Sbjct: 241 KIYPANLFMTTKEATLRAIHEIEDDLHKQVQWFENEGRPFEAKRLQERVTYDMEMIRELG 300
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
+CSGIENYSRYFDGR AG RP+CLLD+FPEDFL+VIDESHV++PQIRAMYGGDR+RK NL
Sbjct: 301 HCSGIENYSRYFDGRAAGTRPYCLLDFFPEDFLIVIDESHVSVPQIRAMYGGDRARKINL 360
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFRLPAA+DNRPL+FDEFE + + +Y+SATPADYEL +SEG++VEQ+IRPTGLLDP
Sbjct: 361 VEYGFRLPAAMDNRPLKFDEFEEMAKQVIYVSATPADYELMKSEGIVVEQVIRPTGLLDP 420
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
II+V+P+ NQ+DDLMEEI IEK ER LVTTLTKRMAEEL+EYLL + + YIHSDVD
Sbjct: 421 IIEVRPSHNQIDDLMEEIQVRIEKNERTLVTTLTKRMAEELTEYLLNNNVKCNYIHSDVD 480
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
TLERV+IM DLR+GVYD L+GVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR
Sbjct: 481 TLERVKIMGDLREGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 540
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVK---------N 593
AAR+++G VI YADKITDSMQLT+DET RRR KQL YNE HGITPQQI K N
Sbjct: 541 AARNVNGMVIMYADKITDSMQLTIDETNRRREKQLKYNEEHGITPQQIKKAKNLNVFATN 600
Query: 594 SAAIWGEGDVSALQ-SDTESGAYIEE--SSMVAADPLADYLSKPKLEALIASTKKQMLAA 650
A+ GE +S+ + + + Y+E+ +S +AADP+ Y+S+ +LE I TKK M A
Sbjct: 601 EAS--GEAVLSSEKFTSSTPRPYVEQESTSTMAADPIVQYMSRKQLEKSIERTKKLMQEA 658
Query: 651 AKELDFLEAARLRDEAARLEKKLEQ 675
AK+LDF+EAA+ RDE ++E+ L++
Sbjct: 659 AKKLDFIEAAQYRDEVLKMEELLKE 683
>gi|88713816|ref|ZP_01107897.1| excinuclease ABC subunit B [Flavobacteriales bacterium HTCC2170]
gi|88707943|gb|EAR00182.1| excinuclease ABC subunit B [Flavobacteriales bacterium HTCC2170]
Length = 663
Score = 855 bits (2210), Expect = 0.0, Method: Composition-based stats.
Identities = 430/672 (63%), Positives = 523/672 (77%), Gaps = 11/672 (1%)
Query: 1 MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLV 60
M +K+ S FKPTGDQPEAIRQL +GIN P QTLLGVTGSGKTF+VANV+ V RPTLV
Sbjct: 1 MKFKVVSEFKPTGDQPEAIRQLEEGINSQEPYQTLLGVTGSGKTFSVANVIEKVQRPTLV 60
Query: 61 LSHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKL 120
L+HNKTLAAQLY EFK FFP NAVEYFVSYYDYYQPEAY+P + YIEKD++IN +IEKL
Sbjct: 61 LAHNKTLAAQLYSEFKQFFPNNAVEYFVSYYDYYQPEAYIPTSGLYIEKDLSINEDIEKL 120
Query: 121 RLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYY 180
RL AT+SLLSGR+DVLVV+SVSCLYG+ NP F + VIS+ Q R + +LV+S Y
Sbjct: 121 RLSATSSLLSGRRDVLVVASVSCLYGIGNPVEFQKNVISIFKNQVIARTKLLHMLVQSLY 180
Query: 181 TNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS 240
+ +F +GNFRVKGD VD+FP+ Y A+R+ F+ E+E + FDP +
Sbjct: 181 SRTTADFRNGNFRVKGDVVDVFPS---YADHAFRIHFFGDEIEEIEAFDPFNNNVIEVYE 237
Query: 241 ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRE 300
L IYPAN+FVT+ + + A+ I DL Q+D+ KEIGKP EAKRL ER +DLEMIRE
Sbjct: 238 NLNIYPANMFVTSPDILQNAIHYIQDDLVHQIDYFKEIGKPLEAKRLEERTNFDLEMIRE 297
Query: 301 LGYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKE 360
LGYCSGIENYSRY DGR+ G RPFCLLDYFP+D+L+VIDESHVTIPQ+ AMYGGDRSRKE
Sbjct: 298 LGYCSGIENYSRYLDGREPGTRPFCLLDYFPDDYLMVIDESHVTIPQVHAMYGGDRSRKE 357
Query: 361 NLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLL 420
NLVEYGFRLPAA+DNRPL+F+EFEAL + +Y+SATPADYEL +GV VEQ+IRPTGLL
Sbjct: 358 NLVEYGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELQLCQGVYVEQVIRPTGLL 417
Query: 421 DPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD 480
DPII+V+P+ NQ+DDL+EEI + +EK ER LVTTLTKRMAEEL++YL R + YIHSD
Sbjct: 418 DPIIEVRPSLNQIDDLVEEIQQRVEKDERTLVTTLTKRMAEELTKYLSRINVRCRYIHSD 477
Query: 481 VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 540
VDTLERV IM+DLRKG++D LIGVNLLREGLDLPEVSLVAILDADKEGFLRS+RSLTQT
Sbjct: 478 VDTLERVEIMQDLRKGIFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSNRSLTQTV 537
Query: 541 GRAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGE 600
GRAARH++G+ I YADKIT SMQ T+DET RR KQ+AYN A+ +TP+ + K+ ++ +
Sbjct: 538 GRAARHLNGKAIMYADKITASMQKTIDETNYRREKQIAYNTANNVTPKALNKSLDSVLAK 597
Query: 601 GDVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAA 660
VS + E+ + AA+P DYL+K ++E +I +K M AAKELDF++AA
Sbjct: 598 NSVSTY--------HFEKEELRAAEPDMDYLTKEQIEKMIRDKRKAMEKAAKELDFMQAA 649
Query: 661 RLRDEAARLEKK 672
+LRDE L+ +
Sbjct: 650 KLRDEIKMLQNQ 661
>gi|126663561|ref|ZP_01734558.1| excinuclease ABC subunit B [Flavobacteria bacterium BAL38]
gi|126624509|gb|EAZ95200.1| excinuclease ABC subunit B [Flavobacteria bacterium BAL38]
Length = 662
Score = 848 bits (2190), Expect = 0.0, Method: Composition-based stats.
Identities = 426/673 (63%), Positives = 524/673 (77%), Gaps = 11/673 (1%)
Query: 1 MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLV 60
M +++ S +KPTGDQP+AI +L +GI G QTLLGVTGSGKTFTVANVV V +PTLV
Sbjct: 1 MKFQVVSEYKPTGDQPQAIEKLSKGIVNGEKYQTLLGVTGSGKTFTVANVVQEVQKPTLV 60
Query: 61 LSHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKL 120
L+HNKTLAAQLY EFK FFP N+V+YFVSYYDYYQPEA++PVT TYIEKD++IN E+EKL
Sbjct: 61 LAHNKTLAAQLYSEFKQFFPNNSVQYFVSYYDYYQPEAFIPVTGTYIEKDLSINEELEKL 120
Query: 121 RLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYY 180
RL T++LLSGR+D++V+SSVSCLYG+ NP F + V++L TGQ+ R + LV+S Y
Sbjct: 121 RLSTTSALLSGRRDIIVISSVSCLYGIGNPVEFQKNVVNLETGQQISRTKLLHQLVQSLY 180
Query: 181 TNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS 240
+ + +F GNFR+KGD V+IFP+ Y +R+ F+ E+E + FD RT +
Sbjct: 181 SRTEADFNPGNFRIKGDIVEIFPS---YGDEPFRIHFFGDEIEEIEAFDARTAQVLERYE 237
Query: 241 ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRE 300
+L IYPAN+FVT+ + + A+ I DL QVD+ KEIGK EAKRL ER +DLEMIRE
Sbjct: 238 KLSIYPANMFVTSPDVLQNAIWAIQQDLVKQVDYFKEIGKHLEAKRLEERTNFDLEMIRE 297
Query: 301 LGYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKE 360
LGYCSGIENYSRY DGR+ G RPFCLLDYFP+DFL+V+DESHVTI Q+ AMYGGDRSRKE
Sbjct: 298 LGYCSGIENYSRYLDGREPGTRPFCLLDYFPDDFLMVVDESHVTISQVHAMYGGDRSRKE 357
Query: 361 NLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLL 420
NLVEYGFRLPAA+DNRPL+F+EFEAL + +Y+SATPADYEL ++EGV VEQ+IRPTGLL
Sbjct: 358 NLVEYGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELEKTEGVYVEQVIRPTGLL 417
Query: 421 DPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD 480
DPII+++P+ANQ+DDL+EEI E ERVLVTTLTKRMAEEL++YL + I YIHSD
Sbjct: 418 DPIIEIRPSANQIDDLIEEIQLRCEADERVLVTTLTKRMAEELAKYLTKVAIRCRYIHSD 477
Query: 481 VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 540
VDTLERV IM+DLRKGV+D LIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQT
Sbjct: 478 VDTLERVEIMQDLRKGVFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTV 537
Query: 541 GRAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGE 600
GRAAR+++G+ I YADKIT SMQ T+DET RR KQ YN HG+ P+ + K+
Sbjct: 538 GRAARNVNGKAIMYADKITKSMQKTIDETTYRREKQTKYNTKHGLEPKALNKSLG----- 592
Query: 601 GDVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAA 660
SAL ++ S Y E+ ++ AA+P + YLSKP++E I +K M AAKELDF++AA
Sbjct: 593 ---SALSGNSVSTGYFEKEALKAAEPESLYLSKPEIEKKIRDMRKLMEKAAKELDFMQAA 649
Query: 661 RLRDEAARLEKKL 673
+LRD+ L+ KL
Sbjct: 650 KLRDDIKALQDKL 662
>gi|86142267|ref|ZP_01060777.1| excinuclease ABC subunit B [Flavobacterium sp. MED217]
gi|85831019|gb|EAQ49476.1| excinuclease ABC subunit B [Leeuwenhoekiella blandensis MED217]
Length = 666
Score = 841 bits (2173), Expect = 0.0, Method: Composition-based stats.
Identities = 433/676 (64%), Positives = 521/676 (77%), Gaps = 11/676 (1%)
Query: 1 MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLV 60
M + + S FKPTGDQP AI QLV GI+ G QTLLGVTGSGKTFTVANV+ V +PTLV
Sbjct: 1 MKFNIQSEFKPTGDQPGAIEQLVGGIDAGERYQTLLGVTGSGKTFTVANVLQEVQKPTLV 60
Query: 61 LSHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKL 120
L+HNKTLAAQLY EFKAFFP NAVEYFVSYYDYYQPEAY+P + TYIEKD++IN EIEKL
Sbjct: 61 LAHNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYIPTSGTYIEKDLSINEEIEKL 120
Query: 121 RLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYY 180
RL T+SLLSGR+D++VV+SVSCLYG+ NP F + VI+L R ++ LV+S Y
Sbjct: 121 RLSTTSSLLSGRRDIIVVASVSCLYGIGNPVEFQKNVIALERDMVISRTQLLKRLVQSLY 180
Query: 181 TNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS 240
+ EF GNFR+KGD+VDI+P GYD A+RV F+ E+E + FD T
Sbjct: 181 SRTTAEFNRGNFRIKGDTVDIYP---GYDDHAFRVHFFGDEIEEIEAFDVTTNEVLEKYD 237
Query: 241 ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRE 300
L IYPAN+FVT+ + + A+ +I D+ QV++ KEIGK EAKRL ER +DLEMIRE
Sbjct: 238 RLNIYPANMFVTSPDVLQNAIDQIGFDMVKQVEYFKEIGKHLEAKRLEERTNFDLEMIRE 297
Query: 301 LGYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKE 360
LGYCSGIENYSRY DGR+ G RPFCLLDYFP+D+L+VIDESHVT+ Q+ AMYGGDRSRKE
Sbjct: 298 LGYCSGIENYSRYLDGREPGTRPFCLLDYFPDDYLMVIDESHVTVSQVSAMYGGDRSRKE 357
Query: 361 NLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLL 420
NLVEYGFRLPAA+DNRPL+F+EFEAL + +Y+SATPADYEL +SEG VEQ+IRPTGLL
Sbjct: 358 NLVEYGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELQKSEGTYVEQIIRPTGLL 417
Query: 421 DPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD 480
DPI++V+P+ NQ+DDL+EEI + +EK ER LVTTLTKRMAEEL++YL R I T YIHSD
Sbjct: 418 DPIVEVRPSLNQIDDLIEEIQKRVEKDERTLVTTLTKRMAEELTKYLTRVDIRTRYIHSD 477
Query: 481 VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 540
VDTLERV IM DLRKG++D L+GVNLLREGLDLPEVSLVAILDADKEGFLRS+RSLTQT
Sbjct: 478 VDTLERVEIMSDLRKGIFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSNRSLTQTI 537
Query: 541 GRAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGE 600
GRAAR+I+G I YAD IT SMQ T+D + RR KQ+AYNE HG+ P I K+
Sbjct: 538 GRAARNINGLAIMYADTITRSMQETIDTSEYRRQKQIAYNEKHGLKPMAIKKSLD----- 592
Query: 601 GDVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAA 660
+AL + EE + VAA+P Y+SKPKLE LI T+KQM AAAKELDF+EAA
Sbjct: 593 ---NALAKKEKFKFEAEELTNVAAEPDTAYMSKPKLEKLIRDTRKQMEAAAKELDFMEAA 649
Query: 661 RLRDEAARLEKKLEQL 676
+LRD ++++++L
Sbjct: 650 KLRDRIKNYQEQVKEL 665
>gi|89890826|ref|ZP_01202335.1| UvrABC excinuclease ABC subunit B (helicase subunit of the DNA
excision repair complex) [Flavobacteria bacterium BBFL7]
gi|89516971|gb|EAS19629.1| UvrABC excinuclease ABC subunit B (helicase subunit of the DNA
excision repair complex) [Flavobacteria bacterium BBFL7]
Length = 666
Score = 841 bits (2172), Expect = 0.0, Method: Composition-based stats.
Identities = 429/676 (63%), Positives = 524/676 (77%), Gaps = 12/676 (1%)
Query: 1 MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLV 60
M +K+ S FKPTGDQP+AI+ LV GIN G QTLLGVTGSGKTFT ANV+ RPTL+
Sbjct: 1 MKFKIQSEFKPTGDQPKAIKSLVDGINNGDQYQTLLGVTGSGKTFTAANVIQETQRPTLI 60
Query: 61 LSHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKL 120
LSHNKTLAAQLY E KAFFP+NAVEYFVSYYDYYQPEA++P + TYIEKD++IN +IEK+
Sbjct: 61 LSHNKTLAAQLYSEMKAFFPDNAVEYFVSYYDYYQPEAFIPSSGTYIEKDLSINEDIEKM 120
Query: 121 RLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYY 180
RL T++LLSGR+DV+VV+SVSCLYG+ NP F + VI L + R + LV+S Y
Sbjct: 121 RLSTTSALLSGRRDVIVVASVSCLYGIGNPVEFQKNVIRLKRDEVIARTQLLHKLVQSLY 180
Query: 181 TNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS 240
+ +F GNFR+ GD++D+FP+ Y A+++ F+ E+E + TF+P GR
Sbjct: 181 SRTTADFNRGNFRINGDTIDVFPSYADY---AFKIHFFGDEIELIETFNPVDGRLMEQWQ 237
Query: 241 ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRE 300
E+ IYPAN+FVT+ + + A+ I DL QVD+ KEIGKP EAKRL ER +DLEMIRE
Sbjct: 238 EITIYPANMFVTSPDVLQNAIHSIQEDLVKQVDYFKEIGKPLEAKRLQERTEFDLEMIRE 297
Query: 301 LGYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKE 360
LGYCSGIENYSRY DGR G RPFCLLDYFPEDFL+VIDESHVT+PQ+ AMYGGDRSRKE
Sbjct: 298 LGYCSGIENYSRYLDGRLPGTRPFCLLDYFPEDFLMVIDESHVTVPQVSAMYGGDRSRKE 357
Query: 361 NLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLL 420
NLV+YGFRLPAA+DNRPL+F+EFE L + LY+SATPADYEL ++EGV EQ+IRPTGLL
Sbjct: 358 NLVDYGFRLPAAMDNRPLKFEEFEMLQNQVLYVSATPADYELAKTEGVYTEQIIRPTGLL 417
Query: 421 DPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD 480
DPII+V+P+ NQ+DDL+EEI + +E ERVLVTTLTKRMAEEL++YL R I YIHSD
Sbjct: 418 DPIIEVRPSQNQIDDLVEEIHKRVELDERVLVTTLTKRMAEELTKYLSRISIRCRYIHSD 477
Query: 481 VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 540
VDTLERV IM DLR G++D LIGVNLLREGLDLPEVSLVAILDADKEGFLR++RSLTQT
Sbjct: 478 VDTLERVAIMHDLRSGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRNNRSLTQTI 537
Query: 541 GRAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGE 600
GRAAR+++G I YADKIT+SMQ T+D+T RR+KQ+AYNE HG+ P I K+
Sbjct: 538 GRAARNVNGLAILYADKITNSMQETIDQTEYRRSKQIAYNETHGLKPMAIKKSLE----- 592
Query: 601 GDVSALQSDTESGAYIEES-SMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEA 659
+AL E+ IE+S ++ AA+ A YLSK KLE I T+KQM AAKELDF+EA
Sbjct: 593 ---TALTKKREATYTIEKSLNLAAAEEEATYLSKEKLEQKIRDTRKQMEKAAKELDFMEA 649
Query: 660 ARLRDEAARLEKKLEQ 675
ARLRD+ L++K+++
Sbjct: 650 ARLRDQIKMLQEKVKE 665
>gi|149277623|ref|ZP_01883764.1| excinuclease ABC, subunit B [Pedobacter sp. BAL39]
gi|149231856|gb|EDM37234.1| excinuclease ABC, subunit B [Pedobacter sp. BAL39]
Length = 678
Score = 833 bits (2151), Expect = 0.0, Method: Composition-based stats.
Identities = 426/678 (62%), Positives = 520/678 (76%), Gaps = 7/678 (1%)
Query: 1 MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLV 60
M ++L S +KPTGDQP AIRQLV G+N QTLLGVTGSGKTFTVANV+ +PTL+
Sbjct: 1 MKFQLVSDYKPTGDQPNAIRQLVDGVNSNEHYQTLLGVTGSGKTFTVANVIQETQKPTLI 60
Query: 61 LSHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKL 120
LSHNKTLAAQLYGEFK FFPENAV YFVSYYDYYQPEA++P T+TYIEKD++IN EIEKL
Sbjct: 61 LSHNKTLAAQLYGEFKQFFPENAVNYFVSYYDYYQPEAFMPSTNTYIEKDLSINEEIEKL 120
Query: 121 RLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYY 180
RLR T++L+SGR+DV+VVSS+SC+YGM NPE FS V G R R+ F+ LVE Y
Sbjct: 121 RLRTTSALMSGRRDVIVVSSISCIYGMGNPEDFSRSVFRFAVGTRISRNSFLHSLVEILY 180
Query: 181 TNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS 240
EF+ G FRVKGD+VDIFPA Y AYRV F+ ++E LS DP TG+ +
Sbjct: 181 ARTTTEFKRGTFRVKGDTVDIFPA---YLDNAYRVSFFGDDIEELSLIDPVTGKTLDKME 237
Query: 241 ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRE 300
++ IYPANLFVT K++ ++ I +L + + L EAKRL ERV +D+EM++E
Sbjct: 238 DMAIYPANLFVTPKDRFSSSIWGIQEELEVRKNQLLGDKHLLEAKRLEERVNFDIEMMKE 297
Query: 301 LGYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKE 360
LGYCSGIENYSR+FDGR G RPFCLLDYFP+D+L+VIDESHVT+PQIRAMYGGDRSRK
Sbjct: 298 LGYCSGIENYSRFFDGRSPGMRPFCLLDYFPDDYLMVIDESHVTVPQIRAMYGGDRSRKM 357
Query: 361 NLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLL 420
+LVEYGFRLP+ALDNRPL FDEFE L P+T+Y+SATPADYEL++SEG+++EQ+IRPTGLL
Sbjct: 358 SLVEYGFRLPSALDNRPLNFDEFEGLAPQTIYVSATPADYELHKSEGIVIEQVIRPTGLL 417
Query: 421 DPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD 480
DP+I+VKP NQVDDL+EEI + I+ +R+LVTTLTKRMAEEL++Y+ R I YIHS+
Sbjct: 418 DPVIEVKPAINQVDDLLEEIDKTIKMGDRILVTTLTKRMAEELTKYMDRLNIKCRYIHSE 477
Query: 481 VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 540
V TLERV I+ LR G +D LIG+NLLREGLDLPEVSLVAILDADKEGFLRS R+L QT
Sbjct: 478 VKTLERVEILRGLRLGEFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSDRALIQTI 537
Query: 541 GRAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGE 600
GRAAR+ GRVI YAD IT+SM+ T+ ET RRR KQ+AYN HGI P+ + K+ AI +
Sbjct: 538 GRAARNDRGRVIMYADNITESMERTISETNRRREKQVAYNLEHGIVPKTVGKSREAILEQ 597
Query: 601 GDVSALQSD-TESGAYIE--ESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFL 657
V + T + AY+E E SM AADP+ Y++K +++ I TKK+M AAKE+DFL
Sbjct: 598 TSVLDFSGNATRAKAYVEVDEVSM-AADPIVQYMNKGEMQKSIDKTKKEMAKAAKEMDFL 656
Query: 658 EAARLRDEAARLEKKLEQ 675
AARLRDE +EK E+
Sbjct: 657 LAARLRDEMFAMEKVFEE 674
>gi|88806149|ref|ZP_01121667.1| excinuclease ABC subunit B [Robiginitalea biformata HTCC2501]
gi|88783758|gb|EAR14929.1| excinuclease ABC subunit B [Robiginitalea biformata HTCC2501]
Length = 662
Score = 832 bits (2150), Expect = 0.0, Method: Composition-based stats.
Identities = 424/672 (63%), Positives = 513/672 (76%), Gaps = 11/672 (1%)
Query: 1 MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLV 60
M +K+ S F+PTGDQP AI QL GI EG QTLLGVTGSGKTFTVANVV V RPTLV
Sbjct: 1 MKFKVVSEFQPTGDQPAAIAQLSGGIREGDRYQTLLGVTGSGKTFTVANVVEQVQRPTLV 60
Query: 61 LSHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKL 120
L+HNKTLAAQLY EFK FFPENAVEYFVSYYDYYQPEAY+P + YIEKD++IN +IEKL
Sbjct: 61 LAHNKTLAAQLYSEFKMFFPENAVEYFVSYYDYYQPEAYIPTSGLYIEKDLSINEDIEKL 120
Query: 121 RLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYY 180
RL T+SLLSGR+DVLVV+SVSCLYG+ NP F + VI L Q R + LV+S Y
Sbjct: 121 RLSTTSSLLSGRRDVLVVASVSCLYGIGNPIEFQKNVIHLERDQVLARTRLMHQLVQSLY 180
Query: 181 TNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS 240
+ +F +GNFRV+GD +D+FP GY A+R+ F+ E+E + FDP +
Sbjct: 181 SRTTADFRNGNFRVRGDVLDVFP---GYADHAFRIHFFGDEIEAIEAFDPYNNKVIEEYE 237
Query: 241 ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRE 300
L IYPAN+FVT+ + + A+ KI DL AQV + KEIGKP EAKRL ER +DLEMIRE
Sbjct: 238 TLNIYPANMFVTSPDVLQEAIHKIQDDLTAQVAYFKEIGKPLEAKRLEERTNFDLEMIRE 297
Query: 301 LGYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKE 360
LGYCSGIENYSRY DGR+ G RPFCLLDYFP+D+L+V+DESHVTIPQ+ AMYGGDRSRKE
Sbjct: 298 LGYCSGIENYSRYLDGREPGTRPFCLLDYFPDDYLMVVDESHVTIPQVHAMYGGDRSRKE 357
Query: 361 NLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLL 420
NLV YGFRLPAA+DNRPL+F+EFEAL + +Y+SATPADYE+ +S GV VEQ+IRPTGLL
Sbjct: 358 NLVNYGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYEMQQSGGVYVEQVIRPTGLL 417
Query: 421 DPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD 480
DP+I+V+P+ NQ+DDL+EEI +++ ER LVTTLTKRMAEEL++YL R + YIHSD
Sbjct: 418 DPVIEVRPSENQIDDLVEEIQLRVQRDERTLVTTLTKRMAEELTKYLTRIDVRCRYIHSD 477
Query: 481 VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 540
VDTLERV IM+DLRKG++D L+GVNLLREGLDLPEVSLVAI+DADKEGFLRS+RSLTQT
Sbjct: 478 VDTLERVEIMQDLRKGIFDVLVGVNLLREGLDLPEVSLVAIIDADKEGFLRSNRSLTQTV 537
Query: 541 GRAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGE 600
GRAARH+ G+ I YAD +TDSMQ T+DET RR KQL YN+ HGITP+ + KN ++
Sbjct: 538 GRAARHLQGKAIMYADTVTDSMQKTIDETNYRRQKQLDYNKEHGITPRALKKNLDSVLAR 597
Query: 601 GDVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAA 660
VS + E+ A +P YL+K + E LI +K M AAK+LDF++AA
Sbjct: 598 NSVSTF--------HFEKKERDAREPDPAYLTKEQKEELIRKKRKDMERAAKDLDFMQAA 649
Query: 661 RLRDEAARLEKK 672
+LRDE L++K
Sbjct: 650 KLRDEIKVLQEK 661
>gi|120436638|ref|YP_862324.1| UvrABC system protein B [Gramella forsetii KT0803]
gi|117578788|emb|CAL67257.1| UvrABC system protein B [Gramella forsetii KT0803]
Length = 667
Score = 831 bits (2147), Expect = 0.0, Method: Composition-based stats.
Identities = 424/678 (62%), Positives = 527/678 (77%), Gaps = 14/678 (2%)
Query: 1 MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLV 60
M + + S +KPTGDQP AI+QLV GI++ QTLLGVTGSGKTFTVANV+ V +PTLV
Sbjct: 1 MKFNIKSDYKPTGDQPNAIKQLVTGIDKNEQYQTLLGVTGSGKTFTVANVIEDVQKPTLV 60
Query: 61 LSHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKL 120
L+HNKTLAAQLY EFK FFPENAVEYFVSYYDYYQPEA++P + TYIEKD++IN EIEKL
Sbjct: 61 LAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAFIPSSGTYIEKDLSINEEIEKL 120
Query: 121 RLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYY 180
RL T+SLLSGR+DV+V++SVSCLYG+ NP F + V+S+ R F+ LV+S Y
Sbjct: 121 RLSTTSSLLSGRRDVIVIASVSCLYGIGNPVEFRKNVVSIERDMEISRTKFLHRLVQSLY 180
Query: 181 TNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS 240
+ + EF GNFR+KGD+VD+FP+ Y A+R+ F+ E+E + FDP T
Sbjct: 181 SRTEAEFNHGNFRIKGDTVDVFPS---YADNAFRIHFFGDEIEDIEAFDPGTNDVIEKYE 237
Query: 241 ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRE 300
L IYPAN+FVT+ + + A+ +I DL QVD+ ++IGK EAKRL ER +DLEMIRE
Sbjct: 238 RLNIYPANMFVTSPDVLQGAIREIQDDLVKQVDYFQDIGKNLEAKRLDERTNFDLEMIRE 297
Query: 301 LGYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKE 360
LGYCSGIENYSRY DGR G RPFCLLDYFPED+L+V+DESHVTIPQ+ AM+GGDRSRKE
Sbjct: 298 LGYCSGIENYSRYLDGRMPGTRPFCLLDYFPEDYLMVVDESHVTIPQVHAMFGGDRSRKE 357
Query: 361 NLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLL 420
NLV+YGFRLPAA+DNRPL+F+EFEAL + +Y+SATPADYEL +SEGV VEQ+IRPTGLL
Sbjct: 358 NLVDYGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELQKSEGVYVEQVIRPTGLL 417
Query: 421 DPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD 480
DPI++V+P+ NQ+DDL+EEI ++K ER+LVTTLTKRMAEEL++YL R I YIHSD
Sbjct: 418 DPIVEVRPSLNQIDDLIEEIQIRVDKDERILVTTLTKRMAEELTKYLTRIDIRCRYIHSD 477
Query: 481 VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 540
VDTLERV IM+DLRKG++D L+GVNLLREGLDLPEVSLVAI+DADKEGFLRS+RSLTQT
Sbjct: 478 VDTLERVEIMQDLRKGIFDVLVGVNLLREGLDLPEVSLVAIIDADKEGFLRSNRSLTQTI 537
Query: 541 GRAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVK--NSAAIW 598
GRAARH+ GR I YADKIT+SMQ T+D+T RR KQ+ YN + ITP ++VK N+A I
Sbjct: 538 GRAARHVDGRAILYADKITNSMQKTIDQTEYRRQKQIDYNTENNITPTKLVKKFNNALIK 597
Query: 599 GEGDVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLE 658
+ D+ D E+ + AA+ A+YLSKP++E + +K M AAKELDF++
Sbjct: 598 EKLDI----YDHET-----RPDLKAAEEEAEYLSKPQMEKKVREKRKAMETAAKELDFMQ 648
Query: 659 AARLRDEAARLEKKLEQL 676
AARLRDE L++K+ ++
Sbjct: 649 AARLRDEIKMLQEKISEM 666
>gi|126647252|ref|ZP_01719762.1| excinuclease ABC subunit B [Algoriphagus sp. PR1]
gi|126577300|gb|EAZ81548.1| excinuclease ABC subunit B [Algoriphagus sp. PR1]
Length = 679
Score = 829 bits (2142), Expect = 0.0, Method: Composition-based stats.
Identities = 422/679 (62%), Positives = 533/679 (78%), Gaps = 6/679 (0%)
Query: 1 MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLV 60
M++KLTS ++PTGDQP+AI +L +G+N G AQ LLGVTGSGKTFT+AN++ V +PTL+
Sbjct: 1 MEFKLTSDYQPTGDQPKAIEKLSEGVNNGEKAQVLLGVTGSGKTFTIANLIQQVQKPTLI 60
Query: 61 LSHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKL 120
LSHNKTLAAQLYGEFK FFPENAVEYF+SYYDYYQPEA++P + TYIEKD++IN EIEKL
Sbjct: 61 LSHNKTLAAQLYGEFKQFFPENAVEYFISYYDYYQPEAFIPSSGTYIEKDLSINDEIEKL 120
Query: 121 RLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYY 180
RL A++SLL+GR+DV+VV+SVSC+YG+ NPE F + VI L G R R+ + LV+ Y
Sbjct: 121 RLSASSSLLTGRRDVIVVASVSCIYGIGNPEEFGKNVIRLQEGDRIPRNQLLFKLVDILY 180
Query: 181 TNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS 240
+ + + G FRVKGD+VDIF A Y YR+ FW E+E + DP++G++
Sbjct: 181 SRTQQDLTHGTFRVKGDTVDIFVA---YADWGYRIFFWGDEIEAIQRIDPKSGKKLNDEK 237
Query: 241 ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRE 300
+ I+PANLFVT K+ + A+ +I D+ AQV+F ++ GK EAKRL ER +DLEMIRE
Sbjct: 238 IISIFPANLFVTGKDTLQTAIHEIQHDMVAQVNFFEKEGKFMEAKRLQERTEFDLEMIRE 297
Query: 301 LGYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKE 360
LGYCSG+ENYSRYFD R+ G RPFCL+DYFP+DFLLVIDESHVT+PQ+RAM+GGDRSRK
Sbjct: 298 LGYCSGVENYSRYFDRREPGARPFCLIDYFPDDFLLVIDESHVTVPQVRAMWGGDRSRKV 357
Query: 361 NLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLL 420
NLV++GFRLP+ALDNRPL+F+EFE L + +Y+SATPADYELN +EG +VEQ+IRPTGLL
Sbjct: 358 NLVDFGFRLPSALDNRPLKFEEFETLANQVVYVSATPADYELNLTEGEVVEQIIRPTGLL 417
Query: 421 DPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD 480
DP IDV+P+ NQ+DDL+EEI + I+ RVLVTTLTKRMAEEL +YL R G+ + YIHS+
Sbjct: 418 DPTIDVRPSQNQIDDLLEEIDQTIKTDARVLVTTLTKRMAEELQKYLERAGVKSRYIHSE 477
Query: 481 VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 540
V TL+RV I+ +LR G++D L+GVNLLREGLDLPEVSLVAILDADKEGFLR+ RSL QT
Sbjct: 478 VKTLDRVEILRELRLGIFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNERSLVQTI 537
Query: 541 GRAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGE 600
GRAAR+ GRVI YADKIT SM++ +DET RRRA Q+AYNE HGITP ++K+ I G+
Sbjct: 538 GRAARNQEGRVIMYADKITPSMKMAIDETKRRRALQIAYNEEHGITPTTVIKSRDKIMGQ 597
Query: 601 GDVSALQSDTE--SGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLE 658
V+ + + + +G E +M AADP+ YLSK KLE LI T+KQM AAKEL+F+E
Sbjct: 598 TKVADSKRNPKVYAGPMPGEENM-AADPVVQYLSKEKLEKLIVQTQKQMEKAAKELNFME 656
Query: 659 AARLRDEAARLEKKLEQLT 677
AARLRDE + +LE+L+
Sbjct: 657 AARLRDEWQSQKSRLEELS 675
>gi|86132353|ref|ZP_01050948.1| excinuclease ABC subunit B [Cellulophaga sp. MED134]
gi|85817272|gb|EAQ38455.1| excinuclease ABC subunit B [Dokdonia donghaensis MED134]
Length = 666
Score = 826 bits (2133), Expect = 0.0, Method: Composition-based stats.
Identities = 416/676 (61%), Positives = 524/676 (77%), Gaps = 11/676 (1%)
Query: 1 MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLV 60
M +KL S FKPTGDQP AI+QLV GIN+ QTLLGVTGSGKTFTVANV+ +PTL+
Sbjct: 1 MKFKLQSDFKPTGDQPSAIKQLVDGINKNETYQTLLGVTGSGKTFTVANVIQETEKPTLI 60
Query: 61 LSHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKL 120
L+HNKTLAAQLY EFKAFFP+NAVEYFVSYYDYYQPEA++P + YIEKD++IN EIEK+
Sbjct: 61 LAHNKTLAAQLYSEFKAFFPDNAVEYFVSYYDYYQPEAFIPSSGVYIEKDLSINEEIEKM 120
Query: 121 RLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYY 180
RL T SLLSGR+DV+VV+SVSCLYG+ NP F + + + Q R F++ LV+ Y
Sbjct: 121 RLSTTTSLLSGRRDVIVVASVSCLYGIGNPAEFEKNITEIKQDQVMARTMFLKKLVQGLY 180
Query: 181 TNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS 240
+ + EF GNFR+KGD+V++FP GY +A+RV F+ E+E + FDP + S
Sbjct: 181 SRTEGEFNRGNFRIKGDTVEVFP---GYADMAFRVHFFGDEIEEIEAFDPASAEVIEKYS 237
Query: 241 ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRE 300
L+IYPAN+FVT+++ + A+ +I DL QV F +E+GK EAKRL ER +DLEMIRE
Sbjct: 238 RLRIYPANMFVTSQDVLQGAINQIGEDLTKQVSFFEEVGKHLEAKRLDERTNFDLEMIRE 297
Query: 301 LGYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKE 360
LGYCSGIENYSRY DGR+ G RPFCLLD+FP+D+L+V+DESHVT+ Q+ AMYGGDRSRKE
Sbjct: 298 LGYCSGIENYSRYLDGREPGTRPFCLLDFFPDDYLMVVDESHVTVSQVSAMYGGDRSRKE 357
Query: 361 NLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLL 420
NLVEYGFRLPAA+DNRPL+F+E+E + + +Y+SATPADYEL +SEG VEQ+IRPTGLL
Sbjct: 358 NLVEYGFRLPAAMDNRPLKFEEWEMMQNQVIYVSATPADYELQKSEGTYVEQIIRPTGLL 417
Query: 421 DPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD 480
DPI++V+P+ NQ+DDL+EEI + E+ ERVLVTTLTKRMAEEL++YL R I T YIHSD
Sbjct: 418 DPIVEVRPSLNQIDDLIEEINKVTERNERVLVTTLTKRMAEELTKYLTRIDIRTRYIHSD 477
Query: 481 VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 540
VDTLERV +M+DLRKGVYD L+GVNLLREGLDLPEVSLVAILDADKEGFLRS+RSLTQT
Sbjct: 478 VDTLERVELMQDLRKGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSNRSLTQTI 537
Query: 541 GRAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGE 600
GRAAR+++G+ I YADKIT SMQ T+D++ RR KQ+ YN +G+TP I K+
Sbjct: 538 GRAARNVNGKAIMYADKITKSMQETIDDSNYRRQKQIDYNNKNGLTPMAIKKSLD----- 592
Query: 601 GDVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAA 660
+AL EE +AA+ +YL+KP++E I ST+K M AAAKELDF++AA
Sbjct: 593 ---NALTRKETYKIEAEELVNLAAEDAEEYLTKPQIEKKIRSTRKAMEAAAKELDFMQAA 649
Query: 661 RLRDEAARLEKKLEQL 676
+LRD+ ++++++L
Sbjct: 650 KLRDQIKVYQEQIKEL 665
>gi|86133729|ref|ZP_01052311.1| excinuclease ABC subunit B [Tenacibaculum sp. MED152]
gi|85820592|gb|EAQ41739.1| excinuclease ABC subunit B [Polaribacter dokdonensis MED152]
Length = 662
Score = 824 bits (2129), Expect = 0.0, Method: Composition-based stats.
Identities = 423/673 (62%), Positives = 513/673 (76%), Gaps = 11/673 (1%)
Query: 1 MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLV 60
M +K+ S F PTGDQPEAI+QL +G+ + QTLLGVTGSGKTFT+ANVV V +PTL+
Sbjct: 1 MQFKIKSEFSPTGDQPEAIKQLSEGVKQNEKFQTLLGVTGSGKTFTIANVVKEVKKPTLI 60
Query: 61 LSHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKL 120
L+HNKTLAAQLY EFK FFPENAVEYFVSYYDYYQPEAY+PV+ TYIEKD++IN +IE+L
Sbjct: 61 LAHNKTLAAQLYSEFKQFFPENAVEYFVSYYDYYQPEAYIPVSGTYIEKDLSINEDIERL 120
Query: 121 RLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYY 180
RL T+SLLSGR+DVLVV+SVSCLYG+ NP F + VI + GQ+ R F+ LV S Y
Sbjct: 121 RLSTTSSLLSGRRDVLVVASVSCLYGIGNPTEFKKNVIPVRVGQQISRTTFLHQLVTSLY 180
Query: 181 TNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS 240
+ ++E +SG F+VKGD V I+P+ Y YRV F+ E+E + FD
Sbjct: 181 SRTEIEIKSGKFKVKGDVVTIYPS---YGDNGYRVHFFGDEIEEIEAFDLENNTVIEKFE 237
Query: 241 ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRE 300
L IYPANLFVT+ + + A+ +I D+ QV++ KEIGKP EAKRL ER +DLEMIRE
Sbjct: 238 HLTIYPANLFVTSPDVLQDAIHQIQEDMVKQVNYFKEIGKPLEAKRLEERTEFDLEMIRE 297
Query: 301 LGYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKE 360
LGYCSGIENYSRY DGR+ G RPFCLLDYFP+D+L+VIDESHVT+PQ AMYGGDRSRKE
Sbjct: 298 LGYCSGIENYSRYLDGREPGTRPFCLLDYFPDDYLMVIDESHVTVPQTHAMYGGDRSRKE 357
Query: 361 NLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLL 420
NLVEYGFRLPAA+DNRPL+FDEFEA+ +T+++SATPADYEL +SEGV VEQ+IRPTGLL
Sbjct: 358 NLVEYGFRLPAAMDNRPLKFDEFEAIQNQTIFVSATPADYELQKSEGVFVEQIIRPTGLL 417
Query: 421 DPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD 480
DP I+V+P+ NQ+DDL+EEI +EK ER LVTTLTKRMAEEL++YL R I YIHSD
Sbjct: 418 DPPIEVRPSLNQIDDLIEEIQVRVEKDERTLVTTLTKRMAEELTKYLTRVDIRCRYIHSD 477
Query: 481 VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 540
VDTLERV IM+DLRKG++D LIGVNLLREGLDLPEVSLVAILDADKEGFLR+++SLTQT
Sbjct: 478 VDTLERVEIMQDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRNNKSLTQTV 537
Query: 541 GRAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGE 600
GRAAR+++G I YADKITDSMQ T+DET RRR Q+AYN H P QI K +
Sbjct: 538 GRAARNVNGLAIMYADKITDSMQKTIDETERRREIQIAYNTKHNRVPTQINKKIEDTLTK 597
Query: 601 GDVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAA 660
VS+ D + AA+ YL K +++ I +KQM AAAK LDF+ AA
Sbjct: 598 SAVSSFHYDN--------AITKAAEQELQYLPKEEIQDRIRKKRKQMEAAAKSLDFIVAA 649
Query: 661 RLRDEAARLEKKL 673
+LRDE A L++++
Sbjct: 650 QLRDEIAVLKEQV 662
>gi|91215169|ref|ZP_01252141.1| excinuclease ABC subunit B [Psychroflexus torquis ATCC 700755]
gi|91186774|gb|EAS73145.1| excinuclease ABC subunit B [Psychroflexus torquis ATCC 700755]
Length = 668
Score = 823 bits (2126), Expect = 0.0, Method: Composition-based stats.
Identities = 418/679 (61%), Positives = 524/679 (77%), Gaps = 12/679 (1%)
Query: 1 MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLV 60
M + L S FKP GDQP+AI +LV+G++ QTLLGVTGSGKTFT+ANVV V RPTLV
Sbjct: 1 MKFTLKSDFKPAGDQPQAIDKLVKGLHNNERYQTLLGVTGSGKTFTMANVVEEVQRPTLV 60
Query: 61 LSHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKL 120
L+HNKTLAAQLY EFKAFFP++AVEYFVSYYDYYQPEA++P + TYIEKD++IN EIEKL
Sbjct: 61 LAHNKTLAAQLYSEFKAFFPDSAVEYFVSYYDYYQPEAFIPSSGTYIEKDLSINDEIEKL 120
Query: 121 RLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYY 180
RL T+SLLSGR+DV+VV+SVSCLYG+ NP F + VIS+ Q+ R ++ LV+S Y
Sbjct: 121 RLSTTSSLLSGRRDVIVVASVSCLYGIGNPAEFQKNVISIEVDQQISRTKLLQRLVQSLY 180
Query: 181 TNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS 240
+ + F GNFR+KGD++D+FP GY AYR+ F+ E+E + FD T
Sbjct: 181 SRTEALFNRGNFRIKGDTLDVFP---GYADHAYRIHFFGDEIEEIEAFDVETKEVMAKYD 237
Query: 241 ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRE 300
+L IYPAN+FVT+ + +++A+ +I +DLG Q+++ K+IGKP EAKR+ ER +DLEMI+E
Sbjct: 238 KLNIYPANIFVTSPDILNQAIDQIAIDLGKQIEYFKDIGKPLEAKRIEERTNFDLEMIKE 297
Query: 301 LGYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKE 360
LGYCSGIENYSRY DGR G RPFCL+DYFP+DFL+++DESHVTIPQ+ AMYGGDRSRKE
Sbjct: 298 LGYCSGIENYSRYLDGRKPGTRPFCLIDYFPDDFLMIVDESHVTIPQVGAMYGGDRSRKE 357
Query: 361 NLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLL 420
NLV+YGFRLPAA+DNRPLR +E+EAL + +Y+SATPADYEL +S GV+VEQ+IRPTGLL
Sbjct: 358 NLVDYGFRLPAAMDNRPLRLEEYEALQNQVVYVSATPADYELQKSGGVVVEQVIRPTGLL 417
Query: 421 DPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD 480
DP+I+V+P+ NQ+DDL+EEI ++K +R+LVTTLTKRMAEELS+YL R I T YIHSD
Sbjct: 418 DPVIEVRPSQNQIDDLIEEINIRVDKDQRILVTTLTKRMAEELSKYLTRVKIRTRYIHSD 477
Query: 481 VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 540
+DTLERV IM DLRKGV+D L+GVNLLREGLDLPEVSLVAILDADKEGFLRS+R+LTQT
Sbjct: 478 IDTLERVEIMSDLRKGVFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSNRTLTQTI 537
Query: 541 GRAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKN-SAAIWG 599
GRAARH+ G+ I YADKIT SMQ TMD+T RR KQ+ YN H ITPQ + K+ +A+ G
Sbjct: 538 GRAARHLEGKGILYADKITVSMQKTMDQTDYRRQKQIDYNIKHNITPQAVKKSLDSALSG 597
Query: 600 EGDVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEA 659
+ E IE ++ AA+ S+ L+ + +K M AAK+LDF+EA
Sbjct: 598 K--------KKEPYEVIEMPTLEAAEEAVANYSESDLKKRMTKVRKSMEKAAKDLDFMEA 649
Query: 660 ARLRDEAARLEKKLEQLTA 678
AR RDE L+KK+E+ A
Sbjct: 650 ARFRDELKMLQKKVEEEKA 668
>gi|88802767|ref|ZP_01118294.1| excinuclease ABC subunit B [Polaribacter irgensii 23-P]
gi|88781625|gb|EAR12803.1| excinuclease ABC subunit B [Polaribacter irgensii 23-P]
Length = 662
Score = 823 bits (2125), Expect = 0.0, Method: Composition-based stats.
Identities = 422/673 (62%), Positives = 515/673 (76%), Gaps = 11/673 (1%)
Query: 1 MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLV 60
M++KL S F PTGDQP+AI++L GIN G QTLLGVTGSGKTFTVANV+ V +PTLV
Sbjct: 1 MEFKLVSEFSPTGDQPQAIQELSDGINTGEKFQTLLGVTGSGKTFTVANVIQEVRKPTLV 60
Query: 61 LSHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKL 120
L+HNKTLAAQLY EFK FFPENAVEYFVSYYDYYQPEAY+PVT TYIEKD++IN +IE+L
Sbjct: 61 LAHNKTLAAQLYSEFKQFFPENAVEYFVSYYDYYQPEAYIPVTGTYIEKDLSINEDIERL 120
Query: 121 RLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYY 180
RL T+SLLSGR+DVLV++SVSCLYG+ NP F + VI + GQ R F+ LV+S Y
Sbjct: 121 RLSTTSSLLSGRRDVLVIASVSCLYGIGNPTEFKKNVIPVQVGQLISRTKFLHQLVQSLY 180
Query: 181 TNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS 240
+ + E +SG F+VKGD V I+P+ Y YR+ F+ EVE + FD +
Sbjct: 181 SRTEHEIKSGTFKVKGDVVTIYPS---YGDNGYRIHFFGDEVEEIELFDLESNAIINTFE 237
Query: 241 ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRE 300
EL IYPANLFVT+ + + A+ I D+ QV + +EIG+ EAKR+ ER +DLEMIRE
Sbjct: 238 ELSIYPANLFVTSPDVLQNAIHHIQEDMVKQVAYFEEIGRSLEAKRIKERTEFDLEMIRE 297
Query: 301 LGYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKE 360
LGYCSGIENYSRY DGRD G RPFCLLDYFP+D+L++IDESHVT+PQ AMYGGDRSRKE
Sbjct: 298 LGYCSGIENYSRYLDGRDPGTRPFCLLDYFPDDYLMIIDESHVTVPQTHAMYGGDRSRKE 357
Query: 361 NLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLL 420
NLV+YGFRLPAA+DNRPL+F+EFEA+ +T+++SATPADYEL ++EGV VEQ+IRPTGLL
Sbjct: 358 NLVDYGFRLPAAMDNRPLKFEEFEAIQNQTIFVSATPADYELQKTEGVFVEQIIRPTGLL 417
Query: 421 DPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD 480
DP+I+V+P+ NQ+DDL+EEI IEK ER LVTTLTKRMAEEL++YL R I YIHSD
Sbjct: 418 DPMIEVRPSLNQIDDLIEEIQIRIEKDERTLVTTLTKRMAEELTKYLTRVNIRCRYIHSD 477
Query: 481 VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 540
VDTLERV I++DLRKG++D LIGVNLLREGLDLPEVSLVAILDADKEGFLR+ +SLTQT
Sbjct: 478 VDTLERVEILQDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRNVKSLTQTI 537
Query: 541 GRAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGE 600
GRAAR+++G I YADK+T SMQ T+DET RRR KQ+AYN A+ + P QI K +
Sbjct: 538 GRAARNVNGLAILYADKMTKSMQKTIDETDRRREKQIAYNTANNMVPTQIKKKIDDTLTK 597
Query: 601 GDVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAA 660
VS+ D + VAA+ YL K ++E I +KQM AAAKELDF+ AA
Sbjct: 598 TAVSSYHYDN--------AKQVAAEQDLQYLPKEEIEKRIRDKRKQMEAAAKELDFVVAA 649
Query: 661 RLRDEAARLEKKL 673
+LRDE A L++ +
Sbjct: 650 KLRDEIALLKESV 662
>gi|110636435|ref|YP_676642.1| excinuclease ABC, subunit B [Cytophaga hutchinsonii ATCC 33406]
gi|110279116|gb|ABG57302.1| excinuclease ABC, subunit B [Cytophaga hutchinsonii ATCC 33406]
Length = 673
Score = 821 bits (2121), Expect = 0.0, Method: Composition-based stats.
Identities = 411/676 (60%), Positives = 517/676 (76%), Gaps = 7/676 (1%)
Query: 1 MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLV 60
M + LTS+++PTGDQP AI+QLV+G+ PAQ LLGVTGSGKTFT+ANV+ +PTLV
Sbjct: 1 MAFNLTSKYEPTGDQPAAIKQLVEGVERNDPAQVLLGVTGSGKTFTMANVIQQTQKPTLV 60
Query: 61 LSHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKL 120
LSHNKTLAAQLYGEFK FFPEN VEYF+SYYDYYQPEA++P + YIEKD+AIN EIEKL
Sbjct: 61 LSHNKTLAAQLYGEFKQFFPENLVEYFISYYDYYQPEAFMPTSGLYIEKDLAINQEIEKL 120
Query: 121 RLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYY 180
RL AT+SL+SGR+D++VV+SVSC+YG+ NPE F + ++ LH GQ+ +R+ + VE Y
Sbjct: 121 RLSATSSLMSGRRDIIVVASVSCIYGIGNPEEFRKSIVVLHKGQQINRNKLLYSFVEILY 180
Query: 181 TNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS 240
+F G FRV GD+VD++PA Y +AYR++ W EVE + +P TG+
Sbjct: 181 NRTTRDFTRGTFRVTGDTVDVYPA---YADIAYRIQMWGDEVESIQMIEPETGKRISEQK 237
Query: 241 ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRE 300
L ++PANLFVT K+ ++ A+ I DL QV + + EAKR+ ER +D+EM+RE
Sbjct: 238 SLTLFPANLFVTGKDSLNNAIHHIQDDLMKQVQLFEMEKRYGEAKRIQERTEFDIEMMRE 297
Query: 301 LGYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKE 360
LGYCSGIENYSRYFDGR G+RPFCL+DYFP+DFLLV+DESHVTIPQIRAM+GGDR+RK
Sbjct: 298 LGYCSGIENYSRYFDGRMPGQRPFCLIDYFPDDFLLVVDESHVTIPQIRAMFGGDRARKT 357
Query: 361 NLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLL 420
NLVEYGFRLP+A+DNRPL FDEFE++ + +Y+SATPADYEL RSEG +VEQ+IRPTGLL
Sbjct: 358 NLVEYGFRLPSAMDNRPLTFDEFESINTQAIYVSATPADYELQRSEGAVVEQIIRPTGLL 417
Query: 421 DPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD 480
DP I +KPT NQ+DDL++EI IE +R+LVTTLTKRMAEEL+++L G+ T YIHS+
Sbjct: 418 DPQIFIKPTVNQIDDLLDEIQERIEMGDRILVTTLTKRMAEELTKFLDGVGVRTRYIHSE 477
Query: 481 VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 540
V TL+RV I+ +LR GV+D L+GVNLLREGLDLPEVSLVAI+DADKEGFLR+ RSL QT
Sbjct: 478 VKTLDRVEILRELRLGVFDVLVGVNLLREGLDLPEVSLVAIMDADKEGFLRNVRSLVQTI 537
Query: 541 GRAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGE 600
GRAAR+ +G+VI YADKIT SMQ +DET+RRRA QLAYNE HGITP + K+ I G+
Sbjct: 538 GRAARNSNGKVIMYADKITASMQQAIDETSRRRATQLAYNELHGITPITVNKSKDEIMGQ 597
Query: 601 GDVSALQSDTESGAYIEESS--MVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLE 658
V+ S+ + YIE +AADP+ L+K +L +I KK M AAK+LDF+E
Sbjct: 598 TKVA--DSNKFNKQYIEPEGEPSLAADPVVAMLNKTELTKMIDRAKKDMDKAAKDLDFVE 655
Query: 659 AARLRDEAARLEKKLE 674
AAR RDE L+K ++
Sbjct: 656 AARYRDEMFALQKIID 671
>gi|83856637|ref|ZP_00950166.1| excinuclease ABC subunit B [Croceibacter atlanticus HTCC2559]
gi|83850437|gb|EAP88305.1| excinuclease ABC subunit B [Croceibacter atlanticus HTCC2559]
Length = 668
Score = 819 bits (2116), Expect = 0.0, Method: Composition-based stats.
Identities = 416/674 (61%), Positives = 512/674 (75%), Gaps = 10/674 (1%)
Query: 1 MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLV 60
M + + S +KPTGDQP AI+QLV I E TLLGVTGSGKTFTVANV+ V RPTLV
Sbjct: 1 MKFTIESEYKPTGDQPGAIKQLVSNIEENEQYSTLLGVTGSGKTFTVANVIKEVQRPTLV 60
Query: 61 LSHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKL 120
L+HNKTLAAQLY EFK+FFP NA+EYFVSYYDYYQPEA++P + TYIEKD++IN EIEKL
Sbjct: 61 LAHNKTLAAQLYSEFKSFFPHNAIEYFVSYYDYYQPEAFIPTSGTYIEKDLSINEEIEKL 120
Query: 121 RLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYY 180
RL T+SLLSGR+DVLVV+SVSCLYG+ NP F + VIS+ Q+ R ++ LV+S Y
Sbjct: 121 RLSTTSSLLSGRRDVLVVASVSCLYGIGNPVEFQKNVISIKRDQQISRTELLKKLVQSLY 180
Query: 181 TNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS 240
+ EF GNFR+KGD++D++P+ Y A+R+ F+ E+E + FD +T
Sbjct: 181 SRTTGEFNHGNFRIKGDTLDVYPS---YADDAFRIHFFGDEIEDIEQFDVQTNTVIEKYE 237
Query: 241 ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRE 300
L IYPAN+FVT+ + + +A+ I +DLG Q ++ K+IGK EAKRL ER +DLEMI+E
Sbjct: 238 RLNIYPANMFVTSPDVLHKAIDNIALDLGKQTEYFKDIGKHLEAKRLEERTNFDLEMIKE 297
Query: 301 LGYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKE 360
LGYCSGIENYSRY DGR+ G RPFCLLDYFPED+L+V+DESHVTIPQ+ AMYGGDRSRKE
Sbjct: 298 LGYCSGIENYSRYLDGREPGTRPFCLLDYFPEDYLMVVDESHVTIPQVHAMYGGDRSRKE 357
Query: 361 NLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLL 420
NLV+YGFRLPAALDNRPL+F+EFEAL + +Y+SATPADYEL +++GV VEQ+IRPTGLL
Sbjct: 358 NLVDYGFRLPAALDNRPLKFEEFEALQNQVIYVSATPADYELQKTDGVYVEQVIRPTGLL 417
Query: 421 DPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD 480
DPII+V+P+ NQ+DDL+EEI ++K +R LVTTLTKRMAEEL +YL R I YIHSD
Sbjct: 418 DPIIEVRPSLNQIDDLIEEIQTRVDKDQRTLVTTLTKRMAEELVKYLTRIDIRCRYIHSD 477
Query: 481 VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 540
VDTLERV IM+DLRKG++D L+GVNLLREGLDLPEVSLVAILDADKEGFLRS+RSLTQT
Sbjct: 478 VDTLERVEIMQDLRKGIFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSNRSLTQTI 537
Query: 541 GRAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGE 600
GRAARH+ G+ I YADKITDSMQ T+DET RR KQ+ YN H ITP + K
Sbjct: 538 GRAARHLEGKAIMYADKITDSMQKTIDETEYRRTKQINYNTKHNITPTALKKGI------ 591
Query: 601 GDVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAA 660
D + E + + ++ AA+ Y ++ +L+ I +K M AAKELDF+EAA
Sbjct: 592 -DSALAGKKVEPYKFEKAPTLKAAEEEVAYFTEDQLDKRIREVRKAMEKAAKELDFIEAA 650
Query: 661 RLRDEAARLEKKLE 674
R RDE L++K E
Sbjct: 651 RFRDEIKMLQQKKE 664
>gi|146299926|ref|YP_001194517.1| excinuclease ABC, B subunit [Flavobacterium johnsoniae UW101]
gi|146154344|gb|ABQ05198.1| excinuclease ABC, B subunit [Flavobacterium johnsoniae UW101]
Length = 663
Score = 817 bits (2110), Expect = 0.0, Method: Composition-based stats.
Identities = 415/673 (61%), Positives = 513/673 (76%), Gaps = 11/673 (1%)
Query: 1 MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLV 60
M +++TS + P GDQP+AI++L QG+ +G QTLLGVTGSGKTFTVANV+ V RPTLV
Sbjct: 1 MSFQVTSDYSPKGDQPQAIQKLAQGVVDGEKYQTLLGVTGSGKTFTVANVIQEVQRPTLV 60
Query: 61 LSHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKL 120
L+HNKTLAAQLY EFK FFP NAVEYFVSYYDYYQPEA++PVT +IEKD++IN E+EK+
Sbjct: 61 LAHNKTLAAQLYSEFKQFFPNNAVEYFVSYYDYYQPEAFMPVTGVFIEKDLSINEELEKM 120
Query: 121 RLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYY 180
RL T+SLLSGR+DVLVV+SVSCLYG+ NP F + VI + Q R + LV+S Y
Sbjct: 121 RLSTTSSLLSGRRDVLVVASVSCLYGIGNPVEFKKNVIEITRDQVISRTKLLHSLVQSLY 180
Query: 181 TNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS 240
+ +F G FR+KGD+V+I+P+ Y AYRV F+ E+E + +FD +T +
Sbjct: 181 ARTEADFNPGTFRIKGDTVEIYPS---YADDAYRVHFFGDEIEEIESFDAKTSQVIEKFK 237
Query: 241 ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRE 300
L IYPAN+FVT+ E + A+ +I DL QVD+ KEIGK EAKRL ER +DLEMIRE
Sbjct: 238 RLTIYPANMFVTSPEVLQGAIWEIQQDLVKQVDYFKEIGKHLEAKRLEERTNFDLEMIRE 297
Query: 301 LGYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKE 360
LGYCSGIENYSRY DGR AG RPFCLLDYFP D+L+V+DESHVT+ Q+ AMYGGDRSRKE
Sbjct: 298 LGYCSGIENYSRYLDGRQAGTRPFCLLDYFPSDYLMVVDESHVTVSQVHAMYGGDRSRKE 357
Query: 361 NLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLL 420
NLVEYGFRLPAA+DNRPL+F+EFEAL + +Y+SATPADYEL +S+G+ VEQ+IRPTGLL
Sbjct: 358 NLVEYGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELQKSDGIYVEQIIRPTGLL 417
Query: 421 DPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD 480
DP+I+V+P+ NQ+DDL+EEI E ERVLVTTLTKRMAEEL++YL + I YIHS+
Sbjct: 418 DPVIEVRPSLNQIDDLIEEIQVRCELDERVLVTTLTKRMAEELAKYLTKVSIRCRYIHSE 477
Query: 481 VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 540
VDTLER+ IM+DLRKG++D LIGVNLLREGLDLPEVSLVAILDADKEGFLR+HRSLTQT
Sbjct: 478 VDTLERIEIMQDLRKGIFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRNHRSLTQTI 537
Query: 541 GRAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGE 600
GRAAR+++G+ I YADKIT SMQ T+DET RR KQ+ +N + ITPQ + K
Sbjct: 538 GRAARNLNGKAIMYADKITASMQRTIDETNYRRTKQINFNVENNITPQALNKKID----- 592
Query: 601 GDVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAA 660
SA + + + AA+P YLSK LE LI +K M AAKELDF++AA
Sbjct: 593 ---SAFTKNPLVEYELGHTLPAAAEPETAYLSKADLEKLIREKRKSMEKAAKELDFMQAA 649
Query: 661 RLRDEAARLEKKL 673
+LRD+ +L+++L
Sbjct: 650 KLRDDIKKLQEQL 662
>gi|150024988|ref|YP_001295814.1| Excinuclease ABC, B subunit [Flavobacterium psychrophilum JIP02/86]
gi|149771529|emb|CAL42998.1| Excinuclease ABC, B subunit [Flavobacterium psychrophilum JIP02/86]
Length = 663
Score = 813 bits (2100), Expect = 0.0, Method: Composition-based stats.
Identities = 412/673 (61%), Positives = 524/673 (77%), Gaps = 10/673 (1%)
Query: 1 MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLV 60
M++++ S +KP GDQP+AI +LVQGI + QTLLGVTGSGKTFTVANV+ V RPTLV
Sbjct: 1 MNFQVQSDYKPKGDQPQAIEKLVQGITDNEKYQTLLGVTGSGKTFTVANVIQEVQRPTLV 60
Query: 61 LSHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKL 120
L+HNKTLAAQLY EFK FFP NAVEYFVSYYDYYQPEA++PVT +IEKD++IN E+EK+
Sbjct: 61 LAHNKTLAAQLYSEFKQFFPNNAVEYFVSYYDYYQPEAFMPVTGVFIEKDLSINEELEKM 120
Query: 121 RLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYY 180
R+ +SLLSGR+D++V+SSVSCLYG+ NP F + VI + GQ R + LV+S Y
Sbjct: 121 RMSTVSSLLSGRRDIIVISSVSCLYGIGNPVEFQKNVIPIEKGQIISRTKLLHQLVQSLY 180
Query: 181 TNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS 240
+ +++F GNFR+KGD+VDI+P+ Y A+R+ F+ E+E + +FD +T +
Sbjct: 181 SRTEMDFMPGNFRIKGDTVDIYPS---YADDAFRIHFFGDEIEEIESFDVKTTQVIEKFE 237
Query: 241 ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRE 300
+L IYPAN+FVT+ + + A+ +I DL QVD+ KEIGK EAKRL ER +DLEMIRE
Sbjct: 238 KLTIYPANMFVTSPDVLQNAIWEIQQDLVKQVDYFKEIGKHLEAKRLEERTNFDLEMIRE 297
Query: 301 LGYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKE 360
LGYCSGIENYSRY DGR G RPFCLLDYFP+D+L+V+DESHVT+ Q+ AMYGGDRSRKE
Sbjct: 298 LGYCSGIENYSRYLDGRSTGTRPFCLLDYFPKDYLMVVDESHVTLSQVHAMYGGDRSRKE 357
Query: 361 NLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLL 420
NLVEYGFRLPAA+DNRPL+F+EFEA+ + +Y+SATPADYEL +++GV+VEQ+IRPTGLL
Sbjct: 358 NLVEYGFRLPAAMDNRPLKFEEFEAMQNQVIYVSATPADYELQKTDGVVVEQVIRPTGLL 417
Query: 421 DPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD 480
DPII+++P+ NQ+DDL+EEI E ERVLVTTLTKRMAEEL++YL + I YIHS+
Sbjct: 418 DPIIEIRPSLNQIDDLIEEIQVRAEIDERVLVTTLTKRMAEELAKYLTKVNIRCRYIHSE 477
Query: 481 VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 540
VDTLER+ IM+DLRKG++D LIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQT
Sbjct: 478 VDTLERIEIMQDLRKGIFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTI 537
Query: 541 GRAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGE 600
GRAAR+++G+ I YADKIT SMQ T+DET RR KQ+ +N A+ I PQ + K + + +
Sbjct: 538 GRAARNLNGKAIMYADKITASMQKTIDETNYRREKQINFNIANNIIPQALNKKIESAFTK 597
Query: 601 GDVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAA 660
+ D+E G S +AA+P +YLSKP++E I +K M AAK+LDF++AA
Sbjct: 598 NTL----VDSELGY---TSGNMAAEPETEYLSKPEIEKRIRDKRKAMEKAAKDLDFMQAA 650
Query: 661 RLRDEAARLEKKL 673
+LRDE L++K+
Sbjct: 651 KLRDEIKDLQEKI 663
>gi|124009064|ref|ZP_01693748.1| excinuclease ABC, B subunit [Microscilla marina ATCC 23134]
gi|123985384|gb|EAY25299.1| excinuclease ABC, B subunit [Microscilla marina ATCC 23134]
Length = 672
Score = 812 bits (2097), Expect = 0.0, Method: Composition-based stats.
Identities = 416/674 (61%), Positives = 516/674 (76%), Gaps = 4/674 (0%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
YKL S F P GDQP+AI QL+ GI G AQTLLGVTGSGKTFT ANVVA +NRPTLVLS
Sbjct: 2 YKLVSDFDPMGDQPKAIEQLIHGIKNGEKAQTLLGVTGSGKTFTAANVVAQLNRPTLVLS 61
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
HNKTLAAQLYGEFK FFP+NAVEYF+SYYDYYQPEA+LP T TYIEKD++IN+EIEKLRL
Sbjct: 62 HNKTLAAQLYGEFKQFFPDNAVEYFISYYDYYQPEAFLPTTGTYIEKDLSINSEIEKLRL 121
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT++LLSGR+DVLVV+SVSC+YG+ NPE F + VISL G R+ F+ LV+ Y+
Sbjct: 122 SATSALLSGRRDVLVVASVSCIYGIGNPEEFGKNVISLKVGDEISRNKFLFALVDILYSR 181
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
+ FE GNFRVKGD++DIF A YD A+R+ F+ EVE + DP T ++ + +
Sbjct: 182 TEAGFERGNFRVKGDTIDIFVA---YDDFAFRIFFFGDEVEAIHRIDPETNQKLSEETAI 238
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
I+PANLFVT ++ + +A+ +I D+ QV + ++ + EAKR+ ER +DLEM+RELG
Sbjct: 239 SIFPANLFVTGQDVLHQAIKEIQDDMVKQVLYFEKENRVEEAKRIKERTEFDLEMMRELG 298
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSG+ENYSRYFD R+ G RPFCLLDYFP+D+LL IDESHVT+PQIR MYGGDRSRK NL
Sbjct: 299 YCSGVENYSRYFDRRNPGSRPFCLLDYFPDDYLLFIDESHVTLPQIRGMYGGDRSRKTNL 358
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
V+YGFRLP+ALDNRPL F EFE + + +YISATPA+YEL +SEGVIVEQLIRPTG++DP
Sbjct: 359 VDYGFRLPSALDNRPLNFQEFETMMNQVIYISATPAEYELEKSEGVIVEQLIRPTGVIDP 418
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
I V+P+ NQ+DDL+EEI ++ RVLVTTLTKRMAEELS+YL R I+ YIHSDV
Sbjct: 419 EIFVRPSLNQIDDLLEEIDATLKDDGRVLVTTLTKRMAEELSKYLDRLDINCTYIHSDVK 478
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
LERV I+ LR G D LIGVNLLREGLDLPEVSLVAI+DADKEGFLR+ RSL QT GR
Sbjct: 479 PLERVEILRQLRLGEIDVLIGVNLLREGLDLPEVSLVAIIDADKEGFLRNERSLIQTIGR 538
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR+ G+VI YADK+T SM+ M+ET RRR Q YN+ H ITP+ + K+ AI G+ +
Sbjct: 539 AARNEKGKVILYADKMTGSMERAMNETQRRRKVQDEYNKKHNITPKTVRKSKEAIMGQTN 598
Query: 603 VSALQSDTESGAYIEESSM-VAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAAR 661
V+ + + Y ++ +AADP+ Y+++ L+ LI +T+K M AAK+LDF+EAAR
Sbjct: 599 VADKRKKAGANYYTAPDTINMAADPVVSYMTQDDLQKLIKTTQKAMEKAAKDLDFMEAAR 658
Query: 662 LRDEAARLEKKLEQ 675
LRDE A L+ L++
Sbjct: 659 LRDELADLKTMLKK 672
>gi|149370618|ref|ZP_01890307.1| excinuclease ABC subunit B [unidentified eubacterium SCB49]
gi|149356169|gb|EDM44726.1| excinuclease ABC subunit B [unidentified eubacterium SCB49]
Length = 666
Score = 793 bits (2049), Expect = 0.0, Method: Composition-based stats.
Identities = 415/676 (61%), Positives = 515/676 (76%), Gaps = 12/676 (1%)
Query: 1 MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLV 60
M + L S F PTGDQPEAI+ LV GI QTLLGVTGSGKTFTVANV+ V +PTLV
Sbjct: 1 MKFNLVSEFSPTGDQPEAIKALVTGIESEEKYQTLLGVTGSGKTFTVANVIEKVQKPTLV 60
Query: 61 LSHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKL 120
L+HNKTLAAQLY EFK FPENAVEY+VSYYDYYQPEA++P + TYIEKD++IN EIE +
Sbjct: 61 LAHNKTLAAQLYTEFKNLFPENAVEYYVSYYDYYQPEAFIPTSGTYIEKDLSINEEIEVM 120
Query: 121 RLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYY 180
RL T+SLLSGR+DV+VV+SVSC+YG+ NP F + VISL GQ R + LV S Y
Sbjct: 121 RLSTTSSLLSGRRDVIVVASVSCIYGIGNPAEFQKSVISLEAGQIISRTKLLHQLVHSLY 180
Query: 181 TNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS 240
+ + EF G FR+KGD++D+FP+ Y A+R+ F+ E+E + F+P
Sbjct: 181 SRTEAEFSHGRFRIKGDTLDVFPS---YADHAFRIHFFGDEIEEIEAFNPENNEVIEKYD 237
Query: 241 ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRE 300
L IYPAN+FVT+ + + A+ +I DL QVD+ KEIGK EAKRL ER T+DLEMIRE
Sbjct: 238 RLTIYPANMFVTSPDVLKEAIWEIQQDLVKQVDYFKEIGKHLEAKRLEERTTFDLEMIRE 297
Query: 301 LGYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKE 360
LGYCSGIENYSRY D R G RPFCLLDYFP D+L+V+DESHV+IPQ+ AMYGGDRSRKE
Sbjct: 298 LGYCSGIENYSRYLDKRLPGTRPFCLLDYFPSDYLMVVDESHVSIPQVGAMYGGDRSRKE 357
Query: 361 NLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLL 420
NLVEYGFRLPAA+DNRPL+ +EFE+L + +++SATPADYEL ++ GV VEQ+IRPTGLL
Sbjct: 358 NLVEYGFRLPAAMDNRPLKAEEFESLQNQVIFVSATPADYELEKTGGVFVEQIIRPTGLL 417
Query: 421 DPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD 480
DP I+++P+ NQ+DDL+EEI +EK ERVLVTTLTKRMAEEL++YL+R + T YIHSD
Sbjct: 418 DPPIEIRPSLNQIDDLLEEIQIRVEKDERVLVTTLTKRMAEELTKYLMRVNVRTRYIHSD 477
Query: 481 VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 540
VDTLERV IM+DLR+G++D L+GVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQT
Sbjct: 478 VDTLERVEIMQDLRRGIFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTV 537
Query: 541 GRAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGE 600
GRAAR+I+G+ I YADKIT SMQLT+D T +R KQ+AYN + ITP QI K+
Sbjct: 538 GRAARNINGKAIMYADKITKSMQLTIDATNYKREKQIAYNTKNNITPTQIKKSFD----- 592
Query: 601 GDVSALQSDTESGAYIEESSMVAADPLA-DYLSKPKLEALIASTKKQMLAAAKELDFLEA 659
+AL + ++ IE + +AA+ +YL+KP++E I T+K M AAKELDF+ A
Sbjct: 593 ---NALSNSKKNAYTIETAQSLAAESEENEYLTKPQIEKNIRDTRKAMEKAAKELDFMMA 649
Query: 660 ARLRDEAARLEKKLEQ 675
A+LRD+ + + +L +
Sbjct: 650 AKLRDKIKKWQDELNK 665
>gi|83815715|ref|YP_445286.1| excinuclease ABC, B subunit [Salinibacter ruber DSM 13855]
gi|83757109|gb|ABC45222.1| excinuclease ABC, B subunit [Salinibacter ruber DSM 13855]
Length = 691
Score = 754 bits (1948), Expect = 0.0, Method: Composition-based stats.
Identities = 389/668 (58%), Positives = 506/668 (75%), Gaps = 8/668 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
++L S F+P GDQP+AIR+LV G+ G QTLLG TG+GKTFTVANV+ VN+PTLV+S
Sbjct: 12 FQLESDFEPMGDQPQAIRELVDGVGRGDEHQTLLGATGTGKTFTVANVIEEVNKPTLVMS 71
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
HNKTLAAQLYGE K FFP NAVEYF+SYYDYYQPE+Y+ DTYIEKD+AIN IE+LRL
Sbjct: 72 HNKTLAAQLYGELKQFFPNNAVEYFISYYDYYQPESYIVPNDTYIEKDVAINDRIERLRL 131
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
RAT+ L+SGR DV+VV+SVSC+YG+ +P F ++++ L G +R+ +R ++ +Y
Sbjct: 132 RATSELVSGRDDVIVVASVSCIYGLGSPAEFQKEILPLERGLEVERNDLLRRFIDLFYER 191
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N +EF G FRV+GD VDIFPA + +A R+EFW E++RL+ F+P +GRE +++
Sbjct: 192 NDIEFTPGTFRVRGDVVDIFPAYR--EEIALRIEFWGDEIDRLALFEPESGRELEEVNQF 249
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
+YPA +FVT ++++RA+ I +L ++ L+E GK EA+RL +R +DLEM++E+G
Sbjct: 250 TLYPAQIFVTPDDRLERAIEDIKEELRWRLAVLREEGKMVEAQRLEQRTMFDLEMMQEVG 309
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSGIENYSR+ GR+ GERP+CLLDYFP+DF+LV+DESHVTIPQ+RAMY GDR RK L
Sbjct: 310 YCSGIENYSRHLTGREPGERPYCLLDYFPDDFMLVVDESHVTIPQVRAMYNGDRQRKLKL 369
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VE+GFRLP+ALDNRPL F+EFE LTP+T+Y+SATPADYEL +S GV VEQ++RPTG+ DP
Sbjct: 370 VEHGFRLPSALDNRPLTFEEFEELTPQTIYMSATPADYELEQSGGVFVEQVVRPTGIPDP 429
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
+DV+PT NQVDDLMEEI + EK ERVLVTTLTKRM E+L++YL +G+ ++HSD+D
Sbjct: 430 EVDVRPTGNQVDDLMEEIRKRAEKGERVLVTTLTKRMTEDLADYLDSYGVDVRWMHSDID 489
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
LERV I+ LR G YD L+GVNLLREGLDLPEVSLVAILDAD++GFLRS SL QTAGR
Sbjct: 490 ALERVDIIRGLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADQQGFLRSETSLIQTAGR 549
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAI-WGEG 601
AAR+++G VI YAD+ITD+MQ +DET RRR +QL YNE H +TP+ I K+ I G
Sbjct: 550 AARNVNGEVILYADEITDAMQKMIDETERRRERQLEYNETHDVTPEPIRKSPDEIKMGTA 609
Query: 602 DVSALQSDTESGA-----YIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDF 656
ESG+ ++ S ADP+ +YLS+ + E L+ +++M AA+ L+F
Sbjct: 610 IADEKSEGEESGSRHHYGSPDQLSSEVADPVVEYLSEDQKEDLVDQMREEMEEAAENLEF 669
Query: 657 LEAARLRD 664
AA LRD
Sbjct: 670 ERAAELRD 677
>gi|77917717|ref|YP_355532.1| excinuclease ABC, B subunit [Pelobacter carbinolicus DSM 2380]
gi|90111043|sp|Q3A8D0|UVRB_PELCD UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
gi|77543800|gb|ABA87362.1| excinuclease ABC, B subunit [Pelobacter carbinolicus DSM 2380]
Length = 667
Score = 735 bits (1898), Expect = 0.0, Method: Composition-based stats.
Identities = 384/669 (57%), Positives = 493/669 (73%), Gaps = 14/669 (2%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
+ L S ++P GDQP+AI +L G+ G Q LLGVTGSGKTFT+ANVVA V RPTLVL+
Sbjct: 4 FNLKSNYQPRGDQPQAIEELSTGLQRGDKHQVLLGVTGSGKTFTMANVVAQVQRPTLVLA 63
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
HNKTLAAQLYGEFK FP+NAVEYFVSYYDYYQPEAY+P TDT+IEKD +IN EI+K+R
Sbjct: 64 HNKTLAAQLYGEFKELFPDNAVEYFVSYYDYYQPEAYVPTTDTFIEKDSSINEEIDKMRH 123
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT SLLS R DVL+VSSVSC+YG+ +PEA+ +I L TG + DR+ ++ LVE Y
Sbjct: 124 SATRSLLS-RNDVLIVSSVSCIYGLGSPEAYYGMLIRLETGMQLDRNALLKNLVEIQYDR 182
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N V+F G FRV+GD+V+IFPA E + A R+EF+ E++ + DP G+ L
Sbjct: 183 NDVDFHRGTFRVRGDTVEIFPAYE--EKRALRIEFFGDEIDAICEIDPLRGKVLDRLERT 240
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
++PA+ +V T+ +DRA+ +I +L ++ + +E EA+R+ +R +D+EMI E+G
Sbjct: 241 AVFPASHYVATRPTLDRAIREIQDELRERLTWFRENNMLLEAQRIEQRTMFDIEMIEEMG 300
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YC GIENYSR+ DGR AG+ P L DYFP+D LL IDESHVT+ QI AMY GDRSRKE L
Sbjct: 301 YCQGIENYSRFLDGRQAGQPPATLFDYFPDDALLFIDESHVTVSQIGAMYRGDRSRKETL 360
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
V YGFR+P+ALDNRPL F+EFEA +T+Y+SATPADYEL +++GV+VEQ+IRPTGLLDP
Sbjct: 361 VRYGFRMPSALDNRPLTFEEFEAKGIQTIYVSATPADYELRKADGVVVEQIIRPTGLLDP 420
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
IDV+P +QVDDL+ EI I++ ERVLVTTLTKRMAEEL+ YL GI Y+HSD+D
Sbjct: 421 PIDVRPAKDQVDDLIHEIRLTIKQNERVLVTTLTKRMAEELTGYLGELGIKVRYLHSDID 480
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ER++I+ +LR+G++D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT GR
Sbjct: 481 TVERMQILRELREGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTCGR 540
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR++ GRVI YAD+IT SM+ +DET RRR QLAYNE HGITPQ + K+
Sbjct: 541 AARNVAGRVIMYADRITRSMRACLDETERRRTAQLAYNEEHGITPQTVKKS--------- 591
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARL 662
+ ++ D Y+E + A+ L DY + ++ IA K++MLAAA L+F +AA L
Sbjct: 592 LRSILEDIAEKDYVELPQV--AEELGDYHTPQDVKNEIARVKEEMLAAAANLEFEKAAEL 649
Query: 663 RDEAARLEK 671
RD L+K
Sbjct: 650 RDRMLELDK 658
>gi|146283328|ref|YP_001173481.1| excinuclease ABC, B subunit [Pseudomonas stutzeri A1501]
gi|145571533|gb|ABP80639.1| excinuclease ABC, B subunit [Pseudomonas stutzeri A1501]
Length = 671
Score = 726 bits (1874), Expect = 0.0, Method: Composition-based stats.
Identities = 376/674 (55%), Positives = 492/674 (72%), Gaps = 6/674 (0%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
++L +RFKP GDQPEAIRQ+++GI G+ QTLLGVTGSGKTF++ANV+A V RPTLVL+
Sbjct: 4 FELVTRFKPAGDQPEAIRQMIEGIEAGLSHQTLLGVTGSGKTFSIANVIAHVQRPTLVLA 63
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLYGEFKAFFP NAVEYFVSYYDYYQPEAY+P +DT+IEKD +IN IE++RL
Sbjct: 64 PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL R D ++V++VSC+YG+ +P+++ + V+ + G R D+ +R L YT
Sbjct: 124 SATKALLE-RPDAIIVTTVSCIYGLGDPQSYLKMVLHVDRGDRLDQRELLRRLTGLQYTR 182
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N ++F FRV+GD +DIFPA + V R+E +D EVE LS FDP TG L
Sbjct: 183 NDMDFARATFRVRGDVIDIFPAESDLEAV--RIELFDDEVESLSAFDPLTGEVIRKLPRF 240
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
YP + +VT +E + A+ KI +L ++D+L+ K EA+RL +R +DLEMI ELG
Sbjct: 241 TFYPKSHYVTPRETLLDAIEKIKDELRERLDYLRSQNKLVEAQRLEQRTRFDLEMIMELG 300
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YC+GIENYSRY GRDAGE P L DY P D LLVIDESHV++PQ+ AMY GDRSRKE L
Sbjct: 301 YCNGIENYSRYLSGRDAGEPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETL 360
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFRLP+ALDNRP+RFDE+EA+ P+T+++SATP YE + G +VEQ++RPTGL+DP
Sbjct: 361 VEYGFRLPSALDNRPMRFDEWEAICPQTIFVSATPGPYEAEHA-GRVVEQVVRPTGLVDP 419
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
I+V+P QVDDL+ EI +C+ K+ERVL TTLTKRM+E+L++YL H + Y+HSD+D
Sbjct: 420 QIEVRPALTQVDDLLSEIRKCVAKEERVLATTLTKRMSEDLTDYLGDHDVKVRYLHSDID 479
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT GR
Sbjct: 480 TVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 539
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR+++GR I YAD IT SMQ +DET RRRAKQ+A+NEAHGI P+ + K+ I
Sbjct: 540 AARNLNGRAILYADNITGSMQRAIDETERRRAKQIAFNEAHGIVPKGVKKDVQDILEGAT 599
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARL 662
V +S G +++ +A ++ S ++ I +++ML A++L+F AA
Sbjct: 600 VPGSRSKKRRGE--AKAAEESARYESELRSPSEITKRIRQLEEKMLLLARDLEFEAAAEA 657
Query: 663 RDEAARLEKKLEQL 676
RDE +L + L Q+
Sbjct: 658 RDEIHKLRELLLQV 671
>gi|110596901|ref|ZP_01385191.1| excinuclease ABC, B subunit [Chlorobium ferrooxidans DSM 13031]
gi|110341588|gb|EAT60048.1| excinuclease ABC, B subunit [Chlorobium ferrooxidans DSM 13031]
Length = 683
Score = 725 bits (1871), Expect = 0.0, Method: Composition-based stats.
Identities = 371/675 (54%), Positives = 493/675 (73%), Gaps = 8/675 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
Y+L S + PTGDQP+AI L +G+ G P QTLLGVTGSGKTFT++NV+A VN+P LV+S
Sbjct: 7 YRLVSPYSPTGDQPKAIEALSEGVLTGNPYQTLLGVTGSGKTFTISNVIARVNKPVLVMS 66
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
HNKTLAAQLYGE K FFP+NAVEYF+SYYD+YQPEAYLP D YI KD+ IN EIE+LRL
Sbjct: 67 HNKTLAAQLYGELKQFFPDNAVEYFISYYDFYQPEAYLPALDKYIAKDLRINDEIERLRL 126
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
RAT+SLLSGRKDV+VVSSVSC+YG+ +PE + ++I L +G DRD F++ L+ +Y
Sbjct: 127 RATSSLLSGRKDVIVVSSVSCIYGLGSPEDWKAQIIELRSGMEKDRDLFLKELIALHYVR 186
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
+ ++ G FRV+GD +D+ PA ++ +A RVEF+ E+E L TFD +G G+
Sbjct: 187 DDIDPAPGKFRVRGDIIDLVPA---HEELALRVEFFGNEIESLQTFDIHSGEVLGVDPYA 243
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
IYPA FV + ++ A+ I+ +L Q+++ + + EA+RL ER YDLEM++ELG
Sbjct: 244 FIYPARQFVAEEAKLKEAMFAIENELAGQLNWFRAENRLLEARRLEERTRYDLEMMKELG 303
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSGIENYSR+ GR+AGERP+CLLDYFPE++L+VIDESHVT+PQIR MYGGDRSRK L
Sbjct: 304 YCSGIENYSRHLSGRNAGERPYCLLDYFPEEYLVVIDESHVTLPQIRGMYGGDRSRKTIL 363
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VE+GFRLP+ALDNRPLRF+EFE + P+ + +SATP+++EL RS GV+VEQL+RPTGLLDP
Sbjct: 364 VEHGFRLPSALDNRPLRFEEFEEMAPQVICVSATPSEHELTRSGGVVVEQLVRPTGLLDP 423
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
++V+P Q+D+L+ EI K + LV TLTKRMAE+L ++ + GI + Y+HS++
Sbjct: 424 PVEVRPVKGQIDNLLAEIRLHTAKGNKALVMTLTKRMAEDLHDFFRKTGIRSRYLHSEIK 483
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
+LER++I+ +LR G D L+GVNLLREGLDLPEVSLVAILDADKEGFLR+ RSL Q AGR
Sbjct: 484 SLERIQILRELRVGDIDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGR 543
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIW---G 599
AAR++ G V+ YAD +T S++ +DETARRR Q YNE HGI P+ I+K+ I G
Sbjct: 544 AARNVEGFVVLYADVVTRSIREVLDETARRRTIQQRYNEEHGIVPRSIIKSVDQILDTTG 603
Query: 600 EGDVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEA 659
D G + M+A L + ++ + A+ A + +M AA +++ +A
Sbjct: 604 VADAEERYRRKRFGLEPKPERMLAG--LLESMTPAEGYAMAAELRIEMQEAAVHMEYEKA 661
Query: 660 ARLRDEAARLEKKLE 674
A LRDE A+LE+ +E
Sbjct: 662 AYLRDEIAKLEQVIE 676
>gi|78188292|ref|YP_378630.1| excinuclease ABC subunit B [Chlorobium chlorochromatii CaD3]
gi|90110879|sp|Q3ATT8|UVRB_CHLCH UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
gi|78170491|gb|ABB27587.1| Excinuclease ABC, B subunit [Chlorobium chlorochromatii CaD3]
Length = 681
Score = 724 bits (1870), Expect = 0.0, Method: Composition-based stats.
Identities = 372/675 (55%), Positives = 492/675 (72%), Gaps = 4/675 (0%)
Query: 2 DYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVL 61
+Y+L S ++P GDQP+AI LVQG+ +G QTLLGVTGSGKTFT++NV+A +NRP LV+
Sbjct: 8 EYQLVSPYQPAGDQPKAIEALVQGVRDGRHWQTLLGVTGSGKTFTISNVIAQLNRPVLVM 67
Query: 62 SHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLR 121
SHNKTLAAQLYGE K FFP NAVEYF+SYYD+YQPEAYLP D YI KD+ IN EIE+LR
Sbjct: 68 SHNKTLAAQLYGELKQFFPHNAVEYFISYYDFYQPEAYLPSLDKYIAKDLRINDEIERLR 127
Query: 122 LRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYT 181
LRAT++LLSGRKDV+VVSSVSC+YG+ +PE + ++I L G DRD F+R L+ +Y
Sbjct: 128 LRATSALLSGRKDVIVVSSVSCIYGLGSPEEWKAQIIKLRAGMEKDRDEFLRELISLHYL 187
Query: 182 NNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSE 241
+ V+ SG FRV+GD++D+ PA ++ +A R+EF+ E+E L TFD +TG G
Sbjct: 188 RDDVQPTSGRFRVRGDTIDLVPA---HEELALRIEFFGSEIESLQTFDIQTGEILGDDEY 244
Query: 242 LKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIREL 301
IYPA FV +E++ A+ I+ +L +++ L+ + EA+RL ER YDLEM++EL
Sbjct: 245 AFIYPARQFVADEEKLQVAMLAIENELAGRLNLLRSENRFVEARRLEERTRYDLEMMKEL 304
Query: 302 GYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKEN 361
GYCSGIENYSR+ GR AGERP CLLDYFPED+++V+DESHVT+PQIR MYGGDRSRK
Sbjct: 305 GYCSGIENYSRHISGRPAGERPICLLDYFPEDYMVVVDESHVTLPQIRGMYGGDRSRKTV 364
Query: 362 LVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLD 421
LVE+GFRLP+ALDNRPLRF+E+E + P+ + ISATP ++EL RS G +VE L+RPTGLLD
Sbjct: 365 LVEHGFRLPSALDNRPLRFEEYEEMVPQVICISATPGEHELMRSGGEVVELLVRPTGLLD 424
Query: 422 PIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDV 481
P ++V+P Q+D+L+ EI I + LV TLTKRM+E+L ++ + GI Y+HS++
Sbjct: 425 PPVEVRPVKGQIDNLLAEIRHHISIGHKALVMTLTKRMSEDLHDFFRKAGIRCRYLHSEI 484
Query: 482 DTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 541
+LER++I+ +LR G D L+GVNLLREGLDLPEVSLVAILDADKEGFLR+ RSL Q AG
Sbjct: 485 KSLERMQILRELRAGDIDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAG 544
Query: 542 RAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEG 601
RAAR++ G V+ YAD IT S+Q +DETARRRA Q YNE HGITP+ IVK+ I
Sbjct: 545 RAARNLDGFVVLYADVITRSIQEVLDETARRRAIQQRYNEEHGITPRSIVKSVDQILDTT 604
Query: 602 DVSALQSDTESGAY-IEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAA 660
V+ + + +E AD L+ K A++ + +M AA+ +++ +AA
Sbjct: 605 GVADAEERYRRRRFGLEPKPERVLSGYADNLTPEKGYAIVEGLRLEMQEAAEHMEYEKAA 664
Query: 661 RLRDEAARLEKKLEQ 675
LRDE ++E+ L++
Sbjct: 665 YLRDEITKMEQVLKK 679
>gi|118744020|ref|ZP_01592018.1| excinuclease ABC, B subunit [Geobacter lovleyi SZ]
gi|118683011|gb|EAV89412.1| excinuclease ABC, B subunit [Geobacter lovleyi SZ]
Length = 665
Score = 724 bits (1869), Expect = 0.0, Method: Composition-based stats.
Identities = 383/671 (57%), Positives = 488/671 (72%), Gaps = 17/671 (2%)
Query: 2 DYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVL 61
D+KL + + P+GDQP+AI +LV GI G Q LLGVTGSGKTFTVANV+A RP LVL
Sbjct: 3 DFKLATTYTPSGDQPQAIDELVAGIERGDKHQVLLGVTGSGKTFTVANVIARTGRPALVL 62
Query: 62 SHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLR 121
+ NKTLAAQLYGEFK FP+NAVEYFVSYYDYYQPEAYLP TDT+IEKD +IN EI+KLR
Sbjct: 63 APNKTLAAQLYGEFKELFPDNAVEYFVSYYDYYQPEAYLPNTDTFIEKDSSINDEIDKLR 122
Query: 122 LRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYT 181
AT SLL+ R DV++V+SVSC+YG+ +PEA+ I H G RD ++ LVE Y
Sbjct: 123 HSATMSLLT-RPDVIIVASVSCIYGIGSPEAYQAMHIFFHQGDDYGRDTLLKKLVEIQYE 181
Query: 182 NNKVEFESGNFRVKGDSVDIFPAVEGYDGV-AYRVEFWDGEVERLSTFDPRTGREYGLLS 240
N +F G FRV+GD ++IFPA YD A R+EF+ EVE +S DP G L+
Sbjct: 182 RNDTDFHRGTFRVRGDVIEIFPA---YDSERALRIEFFGDEVETISQIDPLRGVVLQKLT 238
Query: 241 ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRE 300
++ I+PA+ +V++KE ++R+V +I +DL ++ K+ GK EA+R+ +R YD+EM+ E
Sbjct: 239 KVSIFPASHYVSSKENLERSVAQIRLDLEERIRLFKDQGKLLEAQRIEQRTYYDIEMMEE 298
Query: 301 LGYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKE 360
+G+C GIENYSRY D R GE PF L+DYFP+DF+L +DESH+T Q+ MY GDRSRKE
Sbjct: 299 MGFCQGIENYSRYLDNRQPGEPPFTLIDYFPKDFILFVDESHITNAQVGGMYRGDRSRKE 358
Query: 361 NLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLL 420
LVEYGFRLPAALDNRPL F EFE+ + +++SATPADYEL ++ GV VEQ+IRPTGL+
Sbjct: 359 TLVEYGFRLPAALDNRPLNFQEFESRINQVVHVSATPADYELQQAGGVFVEQVIRPTGLV 418
Query: 421 DPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD 480
DP I+++P A QVDDL+ E+ + K +RVLVTTLTKRMAEEL+ Y G+ Y+HSD
Sbjct: 419 DPQIEIRPAAGQVDDLLHEVRLTVAKGDRVLVTTLTKRMAEELTNYYQELGVRVRYLHSD 478
Query: 481 VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 540
+DT+ER++I+ LR G +D L+G+NLLREGLDLPEVSLVAILDADKEGFLRS RSL QT
Sbjct: 479 IDTIERMQILRSLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSARSLIQTC 538
Query: 541 GRAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGE 600
GRAAR++ GRV+ YAD++T SMQ +DET RRR+KQLAYN+ HGITP+ + K
Sbjct: 539 GRAARNVDGRVLMYADQVTRSMQACLDETGRRRSKQLAYNQEHGITPETVRK-------- 590
Query: 601 GDVSALQSDTESGAYIEESSMVAADPLADY-LSKPKLEALIASTKKQMLAAAKELDFLEA 659
G S L+S E Y+ + V AD Y + ++ LI +K+MLAAAKELDF +A
Sbjct: 591 GMRSILESIAEKD-YV--TPPVVADLEEAYGIELKEIPKLIKKMRKEMLAAAKELDFEKA 647
Query: 660 ARLRDEAARLE 670
A LRD +LE
Sbjct: 648 AELRDRIKQLE 658
>gi|21674365|ref|NP_662430.1| excinuclease ABC subunit B [Chlorobium tepidum TLS]
gi|81790952|sp|Q8KC79|UVRB_CHLTE UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
gi|21647543|gb|AAM72772.1| excinuclease ABC, subunit B [Chlorobium tepidum TLS]
Length = 684
Score = 722 bits (1864), Expect = 0.0, Method: Composition-based stats.
Identities = 371/677 (54%), Positives = 492/677 (72%), Gaps = 4/677 (0%)
Query: 2 DYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVL 61
++KL S + PTGDQP AI+ L G+ G QTLLGVTGSGKTFTV+NV+A VNRPTLVL
Sbjct: 10 EFKLESPYGPTGDQPSAIKALTDGVLRGDRWQTLLGVTGSGKTFTVSNVIAQVNRPTLVL 69
Query: 62 SHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLR 121
SHNKTLAAQLYGE K FFP NAVEYF+SYYD+YQPEAY+P D YI KD+ IN EIE+LR
Sbjct: 70 SHNKTLAAQLYGELKQFFPHNAVEYFISYYDFYQPEAYIPSLDKYIAKDLKINDEIERLR 129
Query: 122 LRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYT 181
LRAT++LLSGR DV+VVSSVSC+YG+ +PE + +++ L G DRD F++ LV +Y
Sbjct: 130 LRATSALLSGRNDVIVVSSVSCIYGLGSPEDWMAQIVELRQGMELDRDEFLQRLVALHYF 189
Query: 182 NNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSE 241
+ V+ G FRV+GD +D+ P G++ +A R+EF+ E++ + TFDP++G G
Sbjct: 190 RDDVDLSPGRFRVRGDVIDLVP---GHEELALRIEFFGSEIDSIHTFDPKSGEIIGRDEY 246
Query: 242 LKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIREL 301
IYPA FV E+++ A+ I+ +L +++ L+ K EA+RL ER YDLEM++EL
Sbjct: 247 AFIYPARQFVADSEKLEVAMLAIENELAERLNALRAEEKLVEAQRLEERTRYDLEMMKEL 306
Query: 302 GYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKEN 361
GYCSGIENY+R+ GR GERP+CLLDYFPEDFL+V+DESHVT+PQIR MYGGDRSRK
Sbjct: 307 GYCSGIENYARHIAGRKPGERPWCLLDYFPEDFLVVVDESHVTLPQIRGMYGGDRSRKTV 366
Query: 362 LVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLD 421
LVE+GFRLP+ALDNRPLRF+EFE + P+ + +SATP+ +EL RS GV+VEQLIRPTGLLD
Sbjct: 367 LVEHGFRLPSALDNRPLRFEEFEEMVPQVICVSATPSAHELMRSGGVVVEQLIRPTGLLD 426
Query: 422 PIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDV 481
P I+V P A Q+D L+ I I K ++ LV TLTKRM+E+L Y + G+ + Y+HS++
Sbjct: 427 PQIEVHPVAGQIDHLLARIRERIAKGQKSLVLTLTKRMSEDLHAYFRKLGLRSQYLHSEI 486
Query: 482 DTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 541
+LER++I+ +LR G + L+GVNLLREGLDLPEV+LVAILDADKEGFLR SL Q AG
Sbjct: 487 KSLERMQILRELRAGDIEVLVGVNLLREGLDLPEVALVAILDADKEGFLRDATSLMQIAG 546
Query: 542 RAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEG 601
RAAR++ G V+FYADKITDSM+ +DET RRR Q YNE HGI P+ I+K+ +
Sbjct: 547 RAARNVEGLVLFYADKITDSMREVLDETERRRRIQREYNEKHGIEPRSIIKSVDQVLNTT 606
Query: 602 DVS-ALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAA 660
V+ A + +++ + + D +S+ + ++A +M AA++ D+ +AA
Sbjct: 607 SVADAEERYRRKRLGLQKRPELELRGVLDSMSRSDVMLMVAEMNAEMQKAAEQTDYEKAA 666
Query: 661 RLRDEAARLEKKLEQLT 677
LRDE L++++EQ+T
Sbjct: 667 YLRDEILMLQERIEQMT 683
>gi|50085644|ref|YP_047154.1| excinuclease ABC subunit B [Acinetobacter sp. ADP1]
gi|81827402|sp|Q6F9D2|UVRB_ACIAD UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
gi|49531620|emb|CAG69332.1| excinuclease ABC subunit B (ATP-dependent DNA excision repair
enzyme UvrAC) [Acinetobacter sp. ADP1]
Length = 675
Score = 720 bits (1858), Expect = 0.0, Method: Composition-based stats.
Identities = 371/672 (55%), Positives = 496/672 (73%), Gaps = 8/672 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
+ L + ++P GDQP+AI++LV GI +G Q LLGVTGSGKT+T+ANV+A RPT+V++
Sbjct: 9 FDLVTNYQPAGDQPQAIKKLVSGIEQGNRNQLLLGVTGSGKTYTMANVIAQTQRPTIVMA 68
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
HNKTLAAQLYGEFKAFFP NAVEYFVSYYDYYQPEAY+P +DT+IEKD AIN I+++RL
Sbjct: 69 HNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMRL 128
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL R+D ++V+SVS +YG+ +PEA+ + ++ + G R +RD IR LVE YT
Sbjct: 129 SATRALLE-RRDAIIVASVSAIYGLGDPEAYMKMLLHVVEGDRINRDDLIRRLVEMQYTR 187
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N++EF G +R++G+ +D+FPA D A R+E +D EV+ + FDP TG+ + +
Sbjct: 188 NELEFLRGTYRIRGEILDVFPAES--DQFAIRIELFDDEVDSIRWFDPLTGKMQRKVPRV 245
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
IYP + +VT K+ + RA+ I +L Q+ F +E K EA+R+ +R YDLEM+++LG
Sbjct: 246 TIYPKSHYVTPKDNLSRAIETIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLG 305
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
Y +GIENYSR+ GR G P L DY PED LL+IDESHVT+PQI AMY GDRSRKENL
Sbjct: 306 YTNGIENYSRHLSGRSPGAAPPTLFDYIPEDALLIIDESHVTVPQIGAMYKGDRSRKENL 365
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
V YGFRLP+ALDNRP++F+E+E + P T+++SATPA YEL +S+ IVEQ++RPTGL+DP
Sbjct: 366 VNYGFRLPSALDNRPMKFEEWERIVPTTVFVSATPAKYELEKSDQ-IVEQVVRPTGLIDP 424
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
I+++P QVDD++ EI E ERVL+TTLTKRMAE+L+ YL +G+ Y+HSD+D
Sbjct: 425 EIEIRPVLTQVDDVLSEINIRKEMDERVLITTLTKRMAEDLTSYLKEYGVKVAYLHSDID 484
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ERV+I+ +LR GVYD L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT GR
Sbjct: 485 TVERVKIIHELRTGVYDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 544
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR+I G+ I YAD++TDSMQ +DET RRR KQ+ +N+ HGITP+ V+ G+
Sbjct: 545 AARNIKGKAILYADRMTDSMQKAIDETERRREKQIEFNKIHGITPRSAVRQKVKEIDTGE 604
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPKLEAL-IASTKKQMLAAAKELDFLEAAR 661
V D G E++ ++AD L+ PKL A ++ +K+ML A+KEL F +AAR
Sbjct: 605 V--FNDDDIEGKISEQARALSADE-RHILADPKLFAKHMSKLEKEMLKASKELQFEQAAR 661
Query: 662 LRDEAARLEKKL 673
LRDE RL+ ++
Sbjct: 662 LRDEILRLKAQM 673
>gi|95929119|ref|ZP_01311864.1| excinuclease ABC, B subunit [Desulfuromonas acetoxidans DSM 684]
gi|95135020|gb|EAT16674.1| excinuclease ABC, B subunit [Desulfuromonas acetoxidans DSM 684]
Length = 663
Score = 719 bits (1857), Expect = 0.0, Method: Composition-based stats.
Identities = 369/670 (55%), Positives = 492/670 (73%), Gaps = 15/670 (2%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
+ L S ++P GDQP+AI +LV+GI +G P Q LLGVTGSGKTFT+ANVV V RPTLVL+
Sbjct: 4 FTLKSVYQPAGDQPKAIEELVEGIEDGAPHQVLLGVTGSGKTFTMANVVERVQRPTLVLA 63
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
HNKTLAAQLYGEF+ FP NAVEYFVSYYDYYQPEAY+ TDT+IEKD +IN EI+KLR
Sbjct: 64 HNKTLAAQLYGEFRELFPNNAVEYFVSYYDYYQPEAYVASTDTFIEKDSSINEEIDKLRH 123
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT SLL+ R+DVL+V+SVSC+YG+ +PEA+ ++ L G +R+ ++ LVE Y
Sbjct: 124 SATRSLLT-RRDVLIVASVSCIYGLGSPEAYFGMLVGLEVGMELERNSLLKKLVEIQYQR 182
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N +F G FRV+GDSV+IFPA E + +A R+EF+ E++ +S DP G L++
Sbjct: 183 NDADFHRGTFRVRGDSVEIFPAYE--EDLALRIEFFGDEIDAISEIDPLRGTVIDKLNKT 240
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
I+PA+ +V T+ ++RA+ +I +L ++ + ++ + EA+R+ +R +D+E++ E+G
Sbjct: 241 SIFPASHYVATRPTLERAIKQIQDELQQRITYFRDRNQLIEAQRIEQRTMFDIEVMEEMG 300
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YC GIENYSRY DGR GE P L DYFP+D LL IDESHV++ Q+ AMY GDRSRKENL
Sbjct: 301 YCQGIENYSRYMDGRGEGEPPATLFDYFPDDALLFIDESHVSVSQVGAMYRGDRSRKENL 360
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
V YGFRLP+ALDNRPL+F+EFE+ +T+Y+SATPADYEL +++GV+VEQ++RPTGL+DP
Sbjct: 361 VGYGFRLPSALDNRPLKFEEFESKNLQTVYVSATPADYELEKAQGVVVEQIVRPTGLVDP 420
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
I+++P QVDDL+E+I I + R+LVTTLTKRMAE+L+ YL GI Y+HSD+D
Sbjct: 421 PIEIRPAQQQVDDLVEQIRDTIATQARILVTTLTKRMAEDLTGYLEEIGIRVRYLHSDID 480
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ER+ I+ LR+G +D LIG+NLLREGLD+PEV LV ILDADKEGFLRS RSL QT GR
Sbjct: 481 TVERMEIIRGLRQGDFDVLIGINLLREGLDIPEVGLVTILDADKEGFLRSERSLIQTCGR 540
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR++ GRVI YAD+IT SMQ +DET RRR +QLA+N HGI P+ + K+ I D
Sbjct: 541 AARNVDGRVIMYADRITRSMQACLDETERRRQQQLAFNAEHGIVPKSVSKSMRTIL--ED 598
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARL 662
+ + ++ A+ LAD+ S +L I + +K+MLAAA EL+F +AA L
Sbjct: 599 LKGVSAEVAQ----------VAEELADWHSPAELRKKINAVRKEMLAAAAELNFEQAAEL 648
Query: 663 RDEAARLEKK 672
RD+ +LEK+
Sbjct: 649 RDQLLKLEKQ 658
>gi|114773972|ref|ZP_01450853.1| excinuclease ABC subunit B [alpha proteobacterium HTCC2255]
Length = 672
Score = 719 bits (1856), Expect = 0.0, Method: Composition-based stats.
Identities = 365/675 (54%), Positives = 491/675 (72%), Gaps = 7/675 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
++L S++ P GDQP AI LV+GI +G+ QTLLGVTGSGKTFT+ANV+ +V RPTL+L+
Sbjct: 5 FELQSKYSPAGDQPTAIASLVEGIEDGLACQTLLGVTGSGKTFTMANVIESVQRPTLILA 64
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
HNKTLAAQLYGE K FFP NAVEYFVSYYDYYQPEAY+P TDT+IEKD +IN IE++RL
Sbjct: 65 HNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDSSINDHIEQMRL 124
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +L+ R+DV++++SVS +YG+ +P+++ + ++ L G D+ +R L E Y
Sbjct: 125 SATKALME-RRDVVIIASVSAIYGLGDPKSYMKMLLHLRQGDTMDQRDILRRLAELQYKR 183
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N V FE GNFRV+GD +DIFPA + A RVE +D E+E++S FDP TG ++
Sbjct: 184 NDVAFERGNFRVRGDVIDIFPA--DSEKQAVRVELFDEEIEQISLFDPLTGAVDKKVTRA 241
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
++P +VT +E++ A+ +I +L ++ D LKE K E +R+ +R +D+EM+ ELG
Sbjct: 242 TVFPKTHYVTPREKILDAIERIKTELVSRKDQLKESNKLIEEQRISQRTQFDIEMMLELG 301
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSGIENYSRY GR GE P L+DYFP+D LL+IDESHVT+ QI AMY GDRSRKE L
Sbjct: 302 YCSGIENYSRYLSGRAPGEPPPTLIDYFPKDGLLMIDESHVTVSQIGAMYKGDRSRKETL 361
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFRLP+ALDNRPL+F+EFE + P+T+Y+SATP +EL R G +VEQ++RPTGLLDP
Sbjct: 362 VEYGFRLPSALDNRPLKFEEFEHIAPQTIYVSATPGKHELERCAGDVVEQVVRPTGLLDP 421
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
II+++P A QVDD++ EI + + ERVL+TTLTKRMAE+LSEYL +G+ Y+HSD+D
Sbjct: 422 IIEIRPVATQVDDVLSEIHKRVAVNERVLITTLTKRMAEDLSEYLNENGVKVRYLHSDID 481
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ER+ I+ DLR G +D ++G+NLLREGLD+PEVSLVAILDADKEGFLR+ +SL QT GR
Sbjct: 482 TVERIEIIRDLRIGKFDVIVGINLLREGLDMPEVSLVAILDADKEGFLRADKSLIQTIGR 541
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AARH++GR I Y DKIT SMQ +DET RRR KQ+ +NE HGI PQ + K I GD
Sbjct: 542 AARHLNGRAILYGDKITGSMQRAIDETDRRRKKQIEHNELHGIVPQALNKPITDIMDVGD 601
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARL 662
SA + ++ + + ++ ++ +A +K M AA+EL+F +AA L
Sbjct: 602 DSA----HPASGKVKLRKIAEKEKTYQKMTATQMMDKVAELEKTMFEAARELEFEKAASL 657
Query: 663 RDEAARLEKKLEQLT 677
RD+ +L ++ +++
Sbjct: 658 RDDIEKLRSEIVKIS 672
>gi|109899270|ref|YP_662525.1| excinuclease ABC, B subunit [Pseudoalteromonas atlantica T6c]
gi|109701551|gb|ABG41471.1| excinuclease ABC, B subunit [Pseudoalteromonas atlantica T6c]
Length = 669
Score = 719 bits (1856), Expect = 0.0, Method: Composition-based stats.
Identities = 375/680 (55%), Positives = 483/680 (71%), Gaps = 20/680 (2%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
++LTS + P GDQP+AI+ LV G+ G+ AQTLLGVTGSGKTFT+ANV+ V RPTL+L+
Sbjct: 5 FQLTSNYSPAGDQPKAIQALVDGLESGLAAQTLLGVTGSGKTFTMANVINEVQRPTLILA 64
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
HNKTLAAQLYGE K FFP NAVEYFVSYYDYYQPEAY+P +DT+IEKD ++NA IE++RL
Sbjct: 65 HNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNAHIEQMRL 124
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +L+ R+DV++VSSVS +YG+ +P+++ + ++ G ++ +R L E Y+
Sbjct: 125 SATKALME-RRDVVIVSSVSAIYGLGDPDSYMKMLLHFRQGDIMNQRDILRRLAEIQYSR 183
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N V FE G FRV+GD +DIFPA + V RVE +D EVER+S FDP TG ++
Sbjct: 184 NDVAFERGTFRVRGDVIDIFPADSEREAV--RVELFDEEVERISIFDPLTGAVEKTVARA 241
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
I+P +VT +E++ AV I +L + L + K E +R+ +R +D+EM++ELG
Sbjct: 242 TIFPKTHYVTPREKILDAVEHIKDELKERKAQLLSVNKLIEEQRISQRCQFDMEMMQELG 301
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSGIENYSRY GR G+ P L+DYFP D L+ IDESHVT+ QI AMY GDRSRKE L
Sbjct: 302 YCSGIENYSRYLSGRTPGDPPPTLIDYFPADGLMFIDESHVTVSQIGAMYKGDRSRKETL 361
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFRLP+ALDNRPL+FDEFE + P+T+Y+SATP YEL ++ IVEQ++RPTGL+DP
Sbjct: 362 VEYGFRLPSALDNRPLKFDEFEQIAPQTIYVSATPGKYELAKTPDDIVEQVVRPTGLIDP 421
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
I+++P QVDDL+ EI +C+ ERVLVTTLTKRM+E+LSEYL H + Y+HSD+D
Sbjct: 422 EIEIRPVGTQVDDLLSEIEKCVALNERVLVTTLTKRMSEDLSEYLDEHNVKARYLHSDID 481
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ER+ I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT GR
Sbjct: 482 TVERIEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGR 541
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AARHI+GR I YAD+IT SMQ MDET RRR KQ +N+ H I P Q+ K I G+
Sbjct: 542 AARHINGRAILYADRITGSMQRAMDETDRRREKQREHNKKHNIVPTQLNKPITDIMDVGE 601
Query: 603 VSA-----LQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFL 657
S L+ ESG + +S P+L IA +K+M AK+L+F
Sbjct: 602 GSGQGKVMLRKVAESGKKY------------NGMSAPELMKSIAELEKKMFQMAKDLEFE 649
Query: 658 EAARLRDEAARLEKKLEQLT 677
+AA LRDE L KKL ++
Sbjct: 650 QAASLRDEVETLRKKLVDMS 669
>gi|88795773|ref|ZP_01111464.1| excinuclease ABC subunit B [Alteromonas macleodii 'Deep ecotype']
gi|88772862|gb|EAR04136.1| excinuclease ABC subunit B [Alteromonas macleodii 'Deep ecotype']
Length = 671
Score = 719 bits (1855), Expect = 0.0, Method: Composition-based stats.
Identities = 377/677 (55%), Positives = 488/677 (72%), Gaps = 12/677 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
++L S++KP GDQP+AI LV G+ G+ QTLLGVTGSGKTFT+ANV+ V RPTL+L+
Sbjct: 5 FELHSKYKPAGDQPKAIEALVDGLESGLAGQTLLGVTGSGKTFTMANVIKEVQRPTLILA 64
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
HNKTLAAQLYGE K FFP NAVEYFVSYYDYYQPEAY+P TDT+IEKD +IN IE++RL
Sbjct: 65 HNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDHIEQMRL 124
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +L+ R+DV++V+SVS +YG+ +PE++ + ++ L G D+ +R L E Y
Sbjct: 125 SATKALME-RRDVVIVASVSAIYGLGDPESYMKMLLHLRQGDTMDQRDILRRLAELQYKR 183
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N + FE G FRV+GD +DIFPA + A RVE +D E++++S FDP TG +
Sbjct: 184 NDLAFERGTFRVRGDVIDIFPA--DSEKQAVRVELFDDEIDKISLFDPLTGAVDKSVIRA 241
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
++P +VT +E++ A+ I +LG + L+E K E +R+ +R +D+EM+ ELG
Sbjct: 242 TVFPKTHYVTPREKILNAIEHIKDELGGRKKQLQEANKLIEEQRISQRTQFDIEMMMELG 301
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSGIENYSRY GR GE P LLDYFP D L+ IDESHVT+ Q+ AMY GDRSRKE L
Sbjct: 302 YCSGIENYSRYLSGRAPGEPPPTLLDYFPADGLMFIDESHVTVSQVGAMYRGDRSRKETL 361
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VE+GFRLP+ALDNRPL+F+EFE + P+T+Y+SATP DYEL ++EG IVEQ++RPTGLLDP
Sbjct: 362 VEFGFRLPSALDNRPLKFEEFEQICPQTIYVSATPGDYELRKTEGEIVEQVVRPTGLLDP 421
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
II+V+P A QVDD++ EI + +E ERVL+TTLTKRMAE+LSEYL HG+ Y+HSD+D
Sbjct: 422 IIEVRPVATQVDDVLSEIKKRVELDERVLITTLTKRMAEDLSEYLNEHGVKVRYLHSDID 481
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ER+ I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLR+ RSL QT GR
Sbjct: 482 TVERIEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRAERSLIQTIGR 541
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AARHI+GR I YAD IT SM+ MDET RRR KQ+A+NEA+ ITP ++ K I G+
Sbjct: 542 AARHINGRAILYADTITKSMKKAMDETERRREKQMAHNEANNITPMRLNKPITDIMDLGE 601
Query: 603 VSALQSDTESGAYIEE--SSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAA 660
+ S +EE S AA S +L I +KQM A+EL+F +AA
Sbjct: 602 SAHPASGKVRLRKVEEKKSKQKAA-------SATELMDQITELEKQMFEYARELEFEKAA 654
Query: 661 RLRDEAARLEKKLEQLT 677
LRD+ L K++ L+
Sbjct: 655 SLRDDIEALRKQVVALS 671
>gi|148262374|ref|YP_001229080.1| excinuclease ABC, B subunit [Geobacter uraniumreducens Rf4]
gi|146395874|gb|ABQ24507.1| excinuclease ABC, B subunit [Geobacter uraniumreducens Rf4]
Length = 664
Score = 717 bits (1852), Expect = 0.0, Method: Composition-based stats.
Identities = 370/670 (55%), Positives = 487/670 (72%), Gaps = 14/670 (2%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
+KL S ++P GDQP+AI +L +G+ G Q LLGVTGSGKTFT+ANV+A VNRP L+L+
Sbjct: 4 FKLNSDYQPRGDQPQAIGELSEGVERGDRDQVLLGVTGSGKTFTMANVIARVNRPALILA 63
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLYGEFK FP+NAVE+FVSYYDYYQPEAYLP TDT+IEKD +IN EI+K+R
Sbjct: 64 PNKTLAAQLYGEFKELFPQNAVEFFVSYYDYYQPEAYLPTTDTFIEKDSSINDEIDKMRH 123
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT SLL+ R DV++V+SVSC+YG+ +P A+ E I H G RD ++ LVE+ Y
Sbjct: 124 SATRSLLT-RSDVIIVASVSCIYGIGSPAAYQEMHIFFHQGDNVGRDELLKRLVETQYER 182
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N ++F G FRV+GD V+IFPA + D A R+EF+ V+ +S DP G+ LS+
Sbjct: 183 NDIDFHRGTFRVRGDIVEIFPAHD--DERALRIEFFGDTVDAISEIDPLRGQVIQKLSKC 240
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
IYPA+ +V KE ++RA+ +I ++L ++ + +E EA+R+ +R +D+EM+ E+G
Sbjct: 241 AIYPASHYVANKETLERAIEQIRLELEERIRWFRERNMLIEAQRIEQRTFFDIEMMEEMG 300
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
+C GIENYSR+FDGR AGE P+ LLDYFP+D+LL +DESH+T+ Q+ MY GDRSRKE L
Sbjct: 301 FCQGIENYSRHFDGRSAGEPPYTLLDYFPKDYLLFVDESHITVSQVGGMYRGDRSRKETL 360
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
V YGFRLP+ALDNRPL F EF + +Y+SATPA+YELN + GV+VEQ+IRPTGL+DP
Sbjct: 361 VNYGFRLPSALDNRPLNFQEFTEKLNQVVYVSATPAEYELNIAGGVVVEQVIRPTGLIDP 420
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
I+V+P + QVDDL+ E+ + K ERVLVTTLTKRMAE+L++Y G+ Y+HSD+D
Sbjct: 421 EIEVRPASGQVDDLLHEVRLTVTKGERVLVTTLTKRMAEDLTDYYRELGVRVKYLHSDID 480
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T++R++I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT GR
Sbjct: 481 TIQRMQIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTCGR 540
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR++ GRVI YAD +T SMQ MDET+RRR Q YN H ITPQ I K I
Sbjct: 541 AARNLAGRVIMYADSVTRSMQACMDETSRRRKIQSEYNRKHHITPQSIKKEVRTI----- 595
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARL 662
L+S E Y + +AA+ + +Y + + L+ +K+MLAAAK+LDF +AA L
Sbjct: 596 ---LESVEEHDYY---TVPLAAESMEEYAAVKDIPKLVKKLRKEMLAAAKQLDFEKAAGL 649
Query: 663 RDEAARLEKK 672
RD +LE++
Sbjct: 650 RDRIKKLEEQ 659
>gi|78186279|ref|YP_374322.1| excinuclease ABC subunit B [Pelodictyon luteolum DSM 273]
gi|78166181|gb|ABB23279.1| Excinuclease ABC, B subunit [Pelodictyon luteolum DSM 273]
Length = 695
Score = 717 bits (1850), Expect = 0.0, Method: Composition-based stats.
Identities = 377/682 (55%), Positives = 490/682 (71%), Gaps = 24/682 (3%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
Y+L S ++P GDQP+AI++L +G+ G P QTLLGVTGSGKTFT++NV+A RP LV+S
Sbjct: 15 YRLVSPYEPAGDQPKAIKELTEGLKAGSPFQTLLGVTGSGKTFTISNVIAQAGRPVLVMS 74
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
HNKTLAAQLYGE + FFP+NAVEYF+SYYD+YQPEAYLP D YI KD+ IN EIE+LRL
Sbjct: 75 HNKTLAAQLYGELRQFFPDNAVEYFISYYDFYQPEAYLPSIDKYIAKDLRINDEIERLRL 134
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
+AT++LLSGR+DV+VVSSVSC+YG+ +PE + ++I L TG +R+ F++ L+ +Y
Sbjct: 135 KATSALLSGRRDVIVVSSVSCIYGLGSPEEWKSQIIELRTGMLKERNSFLQELIALHYVR 194
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
+ V+ SG FRV+GD +D+ PA YD +A RVEF+ E+E L TFD +G G
Sbjct: 195 DDVDPGSGKFRVRGDIIDLIPA---YDQLALRVEFFGDEIESLQTFDMSSGEVLGSDPYA 251
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
IYPA FV +EQ+ +A+ +I+ +L +++ L+ + EA RL ER YDLEM++ELG
Sbjct: 252 FIYPARQFVAGEEQLRQAMLRIENELAGRLNELRSAERFVEAGRLEERTRYDLEMMKELG 311
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSGIENYSR+ GR+ GERP CLLDYFPED+L+V+DESHVT+PQIR MYGGDRSRK L
Sbjct: 312 YCSGIENYSRHISGRNPGERPHCLLDYFPEDYLVVVDESHVTLPQIRGMYGGDRSRKSIL 371
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VE+GFRLP+ALDNRPLRFDEF + P + ISATP D EL RS GV+VEQ++RPTGLLDP
Sbjct: 372 VEHGFRLPSALDNRPLRFDEFMDMVPEVICISATPGDLELERSGGVVVEQVVRPTGLLDP 431
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
++V+P Q+D+L+ EI R +VLV TLTKRM+E+L ++L + G+ + Y+HS++
Sbjct: 432 PVEVRPVKGQIDNLLMEIRRHTAGGHKVLVMTLTKRMSEDLHDFLRKAGVRSRYLHSEIK 491
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
+LER++I+ +LR G D L+GVNLLREGLDLPEVSLVAILDADKEGFLR+ RSL Q AGR
Sbjct: 492 SLERMQILRELRTGEIDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGR 551
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR++ G V+ YAD IT S++ +DETARRR Q YNE HGITP+ I K+ I
Sbjct: 552 AARNVEGFVVLYADTITRSIREVLDETARRREIQHRYNEEHGITPRSITKSVEEIL---- 607
Query: 603 VSALQSDTESGAYIEE---SSMVAADPLADYLSKPKLE--------ALIASTKKQMLAAA 651
DT S A EE +P + L LE A+ A + +M AA
Sbjct: 608 ------DTTSVADAEERYRRRRFGLEPRPERLLSGVLESMTPEEGFAMAAELRAEMQQAA 661
Query: 652 KELDFLEAARLRDEAARLEKKL 673
+++ +AA LRDE ARLE +L
Sbjct: 662 LAMEYEKAAYLRDEIARLEDRL 683
>gi|78224410|ref|YP_386157.1| excinuclease ABC subunit B [Geobacter metallireducens GS-15]
gi|78195665|gb|ABB33432.1| Excinuclease ABC, B subunit [Geobacter metallireducens GS-15]
Length = 665
Score = 716 bits (1849), Expect = 0.0, Method: Composition-based stats.
Identities = 375/674 (55%), Positives = 486/674 (72%), Gaps = 14/674 (2%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
Y L S + P GDQP AI +L +GI G Q LLGVTGSGKTFT+ANV+AA NRP LVL+
Sbjct: 4 YTLVSDYTPRGDQPRAIEELSEGILRGDRHQVLLGVTGSGKTFTMANVIAATNRPALVLA 63
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLYGEFK FP NAVEYFVSYYDYYQPEAY+P TDT+IEKD +IN EI+KLR
Sbjct: 64 PNKTLAAQLYGEFKELFPHNAVEYFVSYYDYYQPEAYIPTTDTFIEKDSSINDEIDKLRH 123
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT SLL+ R+DV++V+SVSC+YG+ +P + I H G+ RD +R LVE Y
Sbjct: 124 AATRSLLT-RQDVIIVASVSCIYGIGSPAEYQAMHIFFHEGEEYGRDTLLRKLVEIQYER 182
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N ++F G FRV+GD V+IFPA E D A R+EF+ VE +S DP G + L++
Sbjct: 183 NDIDFHRGTFRVRGDIVEIFPAHE--DEKALRIEFFGDAVEAISEIDPLRGVAHQRLAKC 240
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
+YPA+ +V T+E ++RA+ +I V L ++ + +E EA+RL +R +DLEM+ E+G
Sbjct: 241 AVYPASHYVATRETLERAIEEIRVALRERIQWFRERNMLVEAQRLEQRTMFDLEMMEEMG 300
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
+C GIENYSR+FDGR GE P+ LLDYFP+DFLL +DESH+T+ Q+ MY GDRSRKE L
Sbjct: 301 FCQGIENYSRHFDGRAPGEPPYTLLDYFPKDFLLFVDESHITVSQVGGMYRGDRSRKETL 360
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
V YGFRLP+ALDNRPL F EF A +T+Y+SATPADYEL ++ GV+VEQ+IRPTGLLDP
Sbjct: 361 VNYGFRLPSALDNRPLTFQEFTARLNQTIYVSATPADYELQQAGGVVVEQVIRPTGLLDP 420
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
+I+V+P A QVDDL+ E+ + + ERVLVTTLTKRMAEEL++Y G+ Y+HSD+D
Sbjct: 421 VIEVRPAAGQVDDLLHEVRETVARGERVLVTTLTKRMAEELTDYYRDLGVRVRYLHSDID 480
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T++R++I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT GR
Sbjct: 481 TIQRMQIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSARSLIQTCGR 540
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR+++GRV YAD +T SM+ ++ETARRR Q A+N H ITP+ + K I
Sbjct: 541 AARNVNGRVTMYADAVTGSMEACIEETARRRTIQEAFNTEHNITPRTVKKGLRTI----- 595
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARL 662
L+S E Y + +AA+P +Y+ ++ L+ +K+MLA+AK L+F +AA L
Sbjct: 596 ---LESIEERDYY---TIPLAAEPQEEYVPADEIPKLVKRLRKEMLASAKNLEFEKAAEL 649
Query: 663 RDEAARLEKKLEQL 676
RD LE++ QL
Sbjct: 650 RDRIKNLEERHLQL 663
>gi|68548663|ref|ZP_00588132.1| Excinuclease ABC, B subunit [Pelodictyon phaeoclathratiforme BU-1]
gi|68244221|gb|EAN26413.1| Excinuclease ABC, B subunit [Pelodictyon phaeoclathratiforme BU-1]
Length = 698
Score = 716 bits (1848), Expect = 0.0, Method: Composition-based stats.
Identities = 365/677 (53%), Positives = 488/677 (72%), Gaps = 4/677 (0%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
YK+ S + P GDQP+AI L G+ G P QTLLGVTGSGKTFT++NV+A +RP LV+S
Sbjct: 23 YKIVSPYSPAGDQPKAIEALCDGVRSGNPYQTLLGVTGSGKTFTISNVIARFDRPVLVMS 82
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
HNKTLAAQLYGE K FFP+NAVEYF+SYYD+YQPEAYLP D YI KD+ IN EIE+LRL
Sbjct: 83 HNKTLAAQLYGELKQFFPDNAVEYFISYYDFYQPEAYLPSLDKYIAKDLRINDEIERLRL 142
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
+AT+SLLSGRKDV+VVSSVSC+YG+ +PE + +++ L +G DRD F++ L+ +Y
Sbjct: 143 KATSSLLSGRKDVIVVSSVSCIYGLGSPEDWKAQIVELRSGMEKDRDLFLKELISLHYIR 202
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
+ V+ SG FRV+GD +D+ PA ++ +A R+EF+ E+E + TFD +G G+
Sbjct: 203 DDVQPSSGKFRVRGDIIDLVPA---HEELALRIEFFGSEIESIQTFDIHSGEVLGVEDYA 259
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
IYPA FV +E++ A+ I+ +L ++++ + + EA+R+ ER YDLEM++ELG
Sbjct: 260 FIYPARQFVADEEKLKVAMLAIENELAERLNYFRSENRLLEARRIEERTRYDLEMMKELG 319
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSGIENYSR+ R GERP CLLDYFP DFL++IDESHVT+PQIR MYGGDRSRK L
Sbjct: 320 YCSGIENYSRHLSARPPGERPCCLLDYFPSDFLVIIDESHVTLPQIRGMYGGDRSRKTIL 379
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VE+GFRLP+ALDNRPLRF+EFE + + + +SATP+++EL RS GV+VEQL+RPTGLLDP
Sbjct: 380 VEHGFRLPSALDNRPLRFEEFEEMASQVICVSATPSEHELLRSGGVVVEQLVRPTGLLDP 439
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
++V+P Q+D+L+ EI K +VLV TLTKRM+E+L ++ + GI + Y+HS++
Sbjct: 440 PVEVRPVTGQIDNLLAEIRIHTAKGNKVLVMTLTKRMSEDLHDFFRKTGIRSRYLHSEIK 499
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
+LER++I+ +LR G D L+GVNLLREGLDLPEVSLVAILDADKEGFLR+ RSL Q AGR
Sbjct: 500 SLERMQILRELRVGDIDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGR 559
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR++ G V+ YAD +T S++ +DETARRR Q YNE HGITP+ I+K+ I
Sbjct: 560 AARNVDGLVVLYADVVTRSIREVLDETARRRTIQQRYNEEHGITPRSIIKSVDQILDTTG 619
Query: 603 VSALQSDTESGAY-IEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAAR 661
V+ + + +E D L+ AL A + +M AA ++++ +AA
Sbjct: 620 VADAEERYRRKRFGLEPKPERVLSGHIDTLTPEAGYALAAELRLEMQEAAVQMEYEKAAY 679
Query: 662 LRDEAARLEKKLEQLTA 678
LRDE +LE+ LE+L A
Sbjct: 680 LRDEITKLEQALERLPA 696
>gi|119858664|ref|ZP_01640085.1| excinuclease ABC, B subunit [Pseudomonas putida W619]
gi|119815026|gb|EAX17781.1| excinuclease ABC, B subunit [Pseudomonas putida W619]
Length = 671
Score = 715 bits (1846), Expect = 0.0, Method: Composition-based stats.
Identities = 368/672 (54%), Positives = 497/672 (73%), Gaps = 6/672 (0%)
Query: 2 DYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVL 61
+++L +RF+P GDQPEAIRQ+V+GI G+ QTLLGVTGSGKTF++ANV+A V RPTLVL
Sbjct: 3 EFQLVTRFQPAGDQPEAIRQMVEGIEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVL 62
Query: 62 SHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLR 121
+ NKTLAAQLYGEFKAFFP NAVEYFVSYYDYYQPEAY+P +DT+IEKD +IN IE++R
Sbjct: 63 APNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMR 122
Query: 122 LRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYT 181
L AT +LL R+D ++V++VSC+YG+ +PE + + V+ + G + D+ +R L + YT
Sbjct: 123 LSATKALLE-RRDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQYT 181
Query: 182 NNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSE 241
N+++F FRV+GD +DIFPA D A R+E +D EVE ++ FDP TG + L
Sbjct: 182 RNEMDFARATFRVRGDVIDIFPAES--DLEAIRIELFDDEVENIAAFDPLTGEVFRKLPR 239
Query: 242 LKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIREL 301
YP + +VT +E + AV I +L ++++L + K EA+RL +R +DLEMI EL
Sbjct: 240 FTFYPKSHYVTPRETLLEAVEGIKDELKERLEYLHKANKLVEAQRLEQRTRFDLEMILEL 299
Query: 302 GYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKEN 361
GYC+GIENYSRY GR AG P L DY P+D LLVIDESHV++PQ+ AMY GDRSRKE
Sbjct: 300 GYCNGIENYSRYLSGRPAGAPPPTLYDYLPDDALLVIDESHVSVPQVGAMYKGDRSRKET 359
Query: 362 LVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLD 421
LVEYGFRLP+ALDNRP+RFDE+E+++P+T+++SATP YE + G +VEQ++RPTGL+D
Sbjct: 360 LVEYGFRLPSALDNRPMRFDEWESVSPQTIFVSATPGPYEAEHA-GRVVEQVVRPTGLVD 418
Query: 422 PIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDV 481
P ++V+P QVDDL+ EI + +E+ ERVL TTLTKRMAE+LS+YL H + Y+HSD+
Sbjct: 419 PQVEVRPALTQVDDLLSEIRKRVEQGERVLATTLTKRMAEDLSDYLADHDVRVRYLHSDI 478
Query: 482 DTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 541
DT+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT G
Sbjct: 479 DTVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 538
Query: 542 RAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEG 601
RAAR+++GR I YAD+IT SMQ +DET RRR KQ+A+N+A+GI P+ +VK+ I
Sbjct: 539 RAARNLNGRAILYADQITGSMQRAIDETERRREKQIAFNQANGIVPKGVVKDITDIMEGA 598
Query: 602 DVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAAR 661
V +S G + +++ +A A+ + ++ I +++M+ A++L+F AA+
Sbjct: 599 TVPGSRSKKRKG--MAKAAEESARYEAELRTPGEITKRIKQLEEKMMQFARDLEFEAAAQ 656
Query: 662 LRDEAARLEKKL 673
LRDE +L ++L
Sbjct: 657 LRDEITKLRERL 668
>gi|126701035|ref|YP_001089932.1| excinuclease ABC subunit B [Clostridium difficile 630]
gi|115252472|emb|CAJ70315.1| excinuclease ABC subunit B [Clostridium difficile 630]
Length = 656
Score = 715 bits (1845), Expect = 0.0, Method: Composition-based stats.
Identities = 365/675 (54%), Positives = 489/675 (72%), Gaps = 19/675 (2%)
Query: 1 MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLV 60
MD+K+ S FKPTGDQPEAI+ +V IN TLLGVTGSGKTFT+AN++ V +PTL+
Sbjct: 1 MDFKIKSDFKPTGDQPEAIKSIVDSINRNEKFSTLLGVTGSGKTFTMANIIQQVKKPTLI 60
Query: 61 LSHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKL 120
++HNKTLAAQLY EFK FFP+NAVEYFVSYYDYYQPEAY+ +DTYIEKD +IN EI+KL
Sbjct: 61 MAHNKTLAAQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYVAHSDTYIEKDASINDEIDKL 120
Query: 121 RLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYY 180
R ATAS+L R+D +++SSVSC+YG+ +P+ + E ++S+ G + DRD I+ L+E Y
Sbjct: 121 RHSATASILE-RRDTIIISSVSCIYGLGDPKDYKELMLSIRPGMQRDRDDVIKRLIEIQY 179
Query: 181 TNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS 240
N + F G FRV+GD ++IFPA D A R+EF+ EV+R++ D TG+ G +
Sbjct: 180 ERNDINFTRGTFRVRGDILEIFPASN--DEKAIRIEFFGDEVDRITEIDYVTGKIVGTRN 237
Query: 241 ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRE 300
+ I+PA+ +VTT E++++A+ +I+ +L Q+ F KE + EA+R+ +R YD+EM++E
Sbjct: 238 HVVIFPASHYVTTPERIEKAIVEIENELQEQIKFFKENDRLLEAQRIEQRTKYDIEMLKE 297
Query: 301 LGYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKE 360
+G+C GIENYSR+ GR GERP+ L+D+FP+D+L+++DE+HVTIPQ+R MY GDRSRK
Sbjct: 298 IGFCQGIENYSRHITGRSEGERPYTLMDFFPDDYLIIVDEAHVTIPQVRGMYAGDRSRKT 357
Query: 361 NLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLL 420
+L+E GFRLP+ALDNRPL F EFE + L++SATP YE+ SE I EQ+IRPTGLL
Sbjct: 358 SLIENGFRLPSALDNRPLNFQEFEGNINQMLFVSATPGPYEIQHSE-TIAEQIIRPTGLL 416
Query: 421 DPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD 480
DPI++V+P NQ+DDL+ EI + IEK ERVL+TTLTK+M+E+L+ YL GI Y+HSD
Sbjct: 417 DPIVEVRPINNQIDDLVGEITKTIEKNERVLITTLTKKMSEDLTNYLKEIGIKVKYLHSD 476
Query: 481 VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 540
+ TLER I+ DLR G +D L+G+NLLREGLD+PEVSL+AILDADKEGFLRS +L QT
Sbjct: 477 IVTLERTEIIRDLRLGKFDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSETALIQTI 536
Query: 541 GRAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGE 600
GRAAR+ +GRVI YAD+ITDSMQ +DET RRR Q YNE H I P+ I KN
Sbjct: 537 GRAARNENGRVIMYADRITDSMQNAIDETKRRRDIQNLYNEEHNIIPKTIQKN------- 589
Query: 601 GDVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAA 660
++ E+ EE + ++D K ++ A I K +M+ AA+ L F AA
Sbjct: 590 -----IRDSIEATKVAEEEVVYG---ISDTDDKDEIRANIDKLKSEMMEAAQNLQFERAA 641
Query: 661 RLRDEAARLEKKLEQ 675
LRD+ +LE+KLE+
Sbjct: 642 ELRDKVKQLEEKLEK 656
>gi|108759548|ref|YP_630851.1| excinuclease ABC, B subunit [Myxococcus xanthus DK 1622]
gi|108463428|gb|ABF88613.1| excinuclease ABC, B subunit [Myxococcus xanthus DK 1622]
Length = 704
Score = 714 bits (1844), Expect = 0.0, Method: Composition-based stats.
Identities = 372/674 (55%), Positives = 482/674 (71%), Gaps = 22/674 (3%)
Query: 2 DYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVL 61
D++L S P GDQP AI +L QG+ G QTLLGVTGSGKTFT+AN++A V RPTLV+
Sbjct: 3 DFQLVSEHSPGGDQPRAIGELTQGLLRGDRYQTLLGVTGSGKTFTMANIIANVQRPTLVM 62
Query: 62 SHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLR 121
+HNKTLAAQLYGEFKA FP NAVEYFVSYYDYYQPEAY+P TDT+IEKD +IN IE++R
Sbjct: 63 AHNKTLAAQLYGEFKALFPHNAVEYFVSYYDYYQPEAYVPSTDTFIEKDSSINDNIERMR 122
Query: 122 LRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYT 181
AT SL + R DV++V+SVSC+YG+ ++ E + G+ RD F+R LVE+ Y
Sbjct: 123 HSATHSLRT-RDDVIIVASVSCIYGLGAARSYVELAVRAAVGEEMGRDTFMRKLVEAQYK 181
Query: 182 NNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSE 241
N ++F G FR +GD+V++FPA E + A RV F+ EVER++ FDP G G L +
Sbjct: 182 RNDLDFHRGTFRARGDTVEVFPAYE--EERAVRVSFFGDEVERVTEFDPLRGVTLGALEK 239
Query: 242 LKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIREL 301
+ I+PA+ +V ++ RA+ I +L Q+ K GK EA+RL +R +DLEMI ++
Sbjct: 240 IVIFPASHYVAEEDVRRRAIQTIRDELSEQLQTFKREGKLLEAQRLEQRAMFDLEMIEQV 299
Query: 302 GYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKEN 361
GYCSGIENYSR+F GR AGE P CL+DYFP + L+++DESH T+PQI AMY GDR+RKE
Sbjct: 300 GYCSGIENYSRHFSGRAAGEPPPCLIDYFPRNLLVMLDESHQTVPQIGAMYRGDRARKET 359
Query: 362 LVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLD 421
LV +GFRLP+ALDNRPL+F EFE L P+ +++SATPA+YEL +S+GV+VEQ+IRPTGL D
Sbjct: 360 LVGFGFRLPSALDNRPLKFGEFEELVPQAIFVSATPAEYELQKSQGVVVEQIIRPTGLTD 419
Query: 422 PIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDV 481
P ++++P NQVDDL+EE+ + + + ERVLVTTLTKRMAE+L+EY G+ Y+HSD+
Sbjct: 420 PEVEIRPVGNQVDDLLEEVRQRVSRSERVLVTTLTKRMAEDLTEYFSDVGVRVRYLHSDI 479
Query: 482 DTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 541
D +ER+ I+ DLRKG +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRSH SL QT G
Sbjct: 480 DAIERMAIIRDLRKGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHVSLIQTIG 539
Query: 542 RAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKN-----SAA 596
RAAR++ GRVI YAD +TDSM+ ++ET RRR Q AYN+ HGITP+ + N A
Sbjct: 540 RAARNVSGRVIMYADNVTDSMKKALEETTRRRDIQRAYNQEHGITPRSVKSNITDLSEHA 599
Query: 597 IWGEGDVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDF 656
+ GDV AL +AA+ D L +++ LI K MLAAA E+ F
Sbjct: 600 AYDAGDVGALP--------------MAAEGEDDVLQPKEIKRLIEEFTKDMLAAADEMQF 645
Query: 657 LEAARLRDEAARLE 670
+AA RD L+
Sbjct: 646 EKAAEYRDRVQLLK 659
>gi|145952562|ref|ZP_01801571.1| hypothetical protein CdifQ_04003936 [Clostridium difficile
QCD-32g58]
Length = 664
Score = 714 bits (1843), Expect = 0.0, Method: Composition-based stats.
Identities = 365/675 (54%), Positives = 489/675 (72%), Gaps = 19/675 (2%)
Query: 1 MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLV 60
MD+K+ S FKPTGDQPEAI+ +V IN TLLGVTGSGKTFT+AN++ V +PTL+
Sbjct: 9 MDFKIKSDFKPTGDQPEAIKSIVDSINRNEKFSTLLGVTGSGKTFTMANIIQQVKKPTLI 68
Query: 61 LSHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKL 120
++HNKTLAAQLY EFK FFP+NAVEYFVSYYDYYQPEAY+ +DTYIEKD +IN EI+KL
Sbjct: 69 MAHNKTLAAQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYVAHSDTYIEKDASINDEIDKL 128
Query: 121 RLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYY 180
R ATAS+L R+D +++SSVSC+YG+ +P+ + E ++S+ G + DRD I+ L+E Y
Sbjct: 129 RHSATASILE-RRDTIIISSVSCIYGLGDPKDYKELMLSIRPGMQRDRDDVIKRLIEIQY 187
Query: 181 TNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS 240
N + F G FRV+GD ++IFPA D A R+EF+ EV+R++ D TG+ G +
Sbjct: 188 ERNDINFTRGTFRVRGDILEIFPASN--DEKAIRIEFFGDEVDRITEIDYVTGKIVGTRN 245
Query: 241 ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRE 300
+ I+PA+ +VTT E++++A+ +I+ +L Q+ F KE + EA+R+ +R YD+EM++E
Sbjct: 246 HVVIFPASHYVTTPERIEKAIVEIENELQEQIKFFKENDRLLEAQRIEQRTKYDIEMLKE 305
Query: 301 LGYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKE 360
+G+C GIENYSR+ GR GERP+ L+D+FP+D+L+++DE+HVTIPQ+R MY GDRSRK
Sbjct: 306 IGFCQGIENYSRHITGRSEGERPYTLMDFFPDDYLIIVDEAHVTIPQVRGMYAGDRSRKT 365
Query: 361 NLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLL 420
+L+E GFRLP+ALDNRPL F EFE + L++SATP YE+ SE I EQ+IRPTGLL
Sbjct: 366 SLIENGFRLPSALDNRPLNFQEFEGNINQMLFVSATPGPYEIQHSE-TIAEQIIRPTGLL 424
Query: 421 DPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD 480
DPI++V+P NQ+DDL+ EI + IEK ERVL+TTLTK+M+E+L+ YL GI Y+HSD
Sbjct: 425 DPIVEVRPINNQIDDLVGEITKTIEKNERVLITTLTKKMSEDLTNYLKEIGIKVKYLHSD 484
Query: 481 VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTA 540
+ TLER I+ DLR G +D L+G+NLLREGLD+PEVSL+AILDADKEGFLRS +L QT
Sbjct: 485 IVTLERTEIIRDLRLGKFDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSETALIQTI 544
Query: 541 GRAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGE 600
GRAAR+ +GRVI YAD+ITDSMQ +DET RRR Q YNE H I P+ I KN
Sbjct: 545 GRAARNENGRVIMYADRITDSMQNAIDETKRRRDIQNLYNEEHNIIPKTIQKN------- 597
Query: 601 GDVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAA 660
++ E+ EE + ++D K ++ A I K +M+ AA+ L F AA
Sbjct: 598 -----IRDSIEATKVAEEEVVYG---ISDTDDKDEIRANIDKLKSEMMEAAQNLQFERAA 649
Query: 661 RLRDEAARLEKKLEQ 675
LRD+ +LE+KLE+
Sbjct: 650 ELRDKVKQLEEKLEK 664
>gi|150380801|ref|ZP_01919840.1| excinuclease ABC, B subunit [Shewanella sediminis HAW-EB3]
gi|150254047|gb|EDM91751.1| excinuclease ABC, B subunit [Shewanella sediminis HAW-EB3]
Length = 675
Score = 714 bits (1843), Expect = 0.0, Method: Composition-based stats.
Identities = 375/671 (55%), Positives = 492/671 (73%), Gaps = 9/671 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
++L S++ P GDQP+AI +LV GI G+ QTLLGVTGSGKTFT+ANV+ + RPT++++
Sbjct: 11 FQLESQYSPAGDQPKAIEKLVDGIESGVACQTLLGVTGSGKTFTIANVIKQLARPTIIMA 70
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLYGE K FFP NAVEYFVSYYDYYQPEAY+P T+T+IEKD ++NA IE++RL
Sbjct: 71 PNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPSTNTFIEKDASVNAHIEQMRL 130
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL RKDV++++SVS +YG+ +P+++ + ++ L G D+ ++ L E YT
Sbjct: 131 SATKALLE-RKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDFMDQRDILKRLSELQYTR 189
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N +E + G +RV+G+ +DIFPA D A RVE +D E+ERLS FDP TG ++
Sbjct: 190 NDIELKRGTYRVRGEVIDIFPA--DSDKEAIRVELFDVEIERLSLFDPLTGHISKRIART 247
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
IYP + +VT +E++ A +I +L + L + K EA+R+ ERV YD+EM+ ELG
Sbjct: 248 TIYPKSHYVTPREKILAATEEIKEELRIRKKQLLDNNKLIEAQRINERVQYDIEMMTELG 307
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSGIENYSRY GR G+ P LLDY P+D LL+IDESHVT+PQI AMY GDRSRK NL
Sbjct: 308 YCSGIENYSRYLSGRAEGDGPPTLLDYLPDDGLLIIDESHVTVPQIGAMYKGDRSRKSNL 367
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFRLP+ALDNRPL+F+EFE L P+T+Y+SATP+ YE+++S+G + +Q+IRPTGLLDP
Sbjct: 368 VEYGFRLPSALDNRPLKFEEFERLMPQTIYVSATPSQYEVDKSDGEVAQQVIRPTGLLDP 427
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
+++V+P A QVDDL+ E+A+ ++ ERVLVTTLTKRM+E+LSEYL HGI Y+HSD+D
Sbjct: 428 VLEVRPIAIQVDDLLSEVAQRVKVNERVLVTTLTKRMSEDLSEYLDEHGIKVRYLHSDID 487
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ERV I+ DLR GV+D L+G+NLLREGLDLPEVSLV ILDADKEGFLRS RSL QT GR
Sbjct: 488 TVERVEIIRDLRLGVFDVLVGINLLREGLDLPEVSLVCILDADKEGFLRSERSLIQTIGR 547
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR+I+G+VI YADKITDSM M ET RRR Q +N +GI P+ + K + GD
Sbjct: 548 AARNINGKVILYADKITDSMSRAMGETERRRKLQHQFNLDNGIVPKGVSKKITDVMDVGD 607
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARL 662
SA D ++ + ES P LS +++AL +KQM AK L+F +AA L
Sbjct: 608 KSADGQDVDNNK-VAESRAPYGGPDIATLSH-QMDAL----EKQMHEHAKNLEFEQAAAL 661
Query: 663 RDEAARLEKKL 673
RD+ A+L + L
Sbjct: 662 RDQVAKLREAL 672
>gi|20808375|ref|NP_623546.1| excinuclease ABC subunit B [Thermoanaerobacter tengcongensis MB4]
gi|22257068|sp|Q8R8M4|UVRB_THETN UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
gi|20516986|gb|AAM25150.1| Helicase subunit of the DNA excision repair complex
[Thermoanaerobacter tengcongensis MB4]
Length = 662
Score = 714 bits (1843), Expect = 0.0, Method: Composition-based stats.
Identities = 376/675 (55%), Positives = 484/675 (71%), Gaps = 18/675 (2%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
+KL S FKPTGDQP+AI +LV+G+ G QTLLGVTGSGKTFT+AN++A +NRPTLV++
Sbjct: 4 FKLVSNFKPTGDQPQAIEKLVEGVRRGYRYQTLLGVTGSGKTFTMANIIARLNRPTLVIA 63
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
HNKTLAAQLY EFK FFPENAVEYFVSYYDYYQPEAY+P TDTYIEKD +IN EI+KLR
Sbjct: 64 HNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPETDTYIEKDASINEEIDKLRH 123
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
ATA+L R+DV++V+SVSC+YG+ +P + ++SL G DRD IR LVE Y
Sbjct: 124 SATAALFE-RRDVIIVASVSCIYGLGDPIDYENLMLSLRPGMVKDRDEIIRKLVEIQYER 182
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N + F G FRV+GD +++FPA + A R+E + E++R++ D TG G +
Sbjct: 183 NDINFTRGKFRVRGDVIEVFPA--SFSNKAIRIELFGDEIDRIAEIDVLTGEVLGYRKHV 240
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
I+PA+ + T++++++RA+ I +L + LKE+GK EA+RL++R YDLEM++E+G
Sbjct: 241 AIFPASHYATSRDKLERAIKSIREELEERYKELKEMGKIVEAERLWQRTNYDLEMLQEMG 300
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YC GIENYSR+ GR G P+ LLDYFPEDFL+ IDESHVTIPQ+R MY GDRSRKE L
Sbjct: 301 YCKGIENYSRHISGRPPGSPPYTLLDYFPEDFLIFIDESHVTIPQLRGMYNGDRSRKEAL 360
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFRLP+A DNRPL F+EFE + +++SATP YE+ SE V VEQLIRPTGL+DP
Sbjct: 361 VEYGFRLPSAYDNRPLTFEEFEQRVNQVIFVSATPGPYEMEHSEQV-VEQLIRPTGLVDP 419
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
+ V+P QVDDL+ EI + + K RVLVTTLTK+MAE+LS+YL GI Y+HSD++
Sbjct: 420 EVIVRPVKGQVDDLIAEIRKTVAKGYRVLVTTLTKKMAEDLSDYLKEMGIRVRYLHSDIE 479
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ERV I+ DLR G +D LIG+NLLREGLD+PEV+LVAILDADKEGFLRS SL QT GR
Sbjct: 480 TIERVEIIRDLRLGKFDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGR 539
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR+ GRVI YAD IT+SM+ +DET RRR Q+ YNE HGI P+ +VK G D
Sbjct: 540 AARNAEGRVIMYADTITNSMRRAIDETNRRRKIQMEYNEKHGIVPKTVVK------GVRD 593
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARL 662
V E E++ A++ +++ I +K+M AA EL F +AA+L
Sbjct: 594 VIQATQVAEKEEKYEKT--------ANFYDPDVIKSTIEQLEKEMRQAAIELQFEKAAKL 645
Query: 663 RDEAARLEKKLEQLT 677
RD L K+LE+++
Sbjct: 646 RDMILELRKQLEEVS 660
>gi|116333297|ref|YP_794824.1| Helicase subunit of the DNA excision repair complex [Lactobacillus
brevis ATCC 367]
gi|116098644|gb|ABJ63793.1| Helicase subunit of the DNA excision repair complex [Lactobacillus
brevis ATCC 367]
Length = 668
Score = 713 bits (1841), Expect = 0.0, Method: Composition-based stats.
Identities = 377/662 (56%), Positives = 478/662 (72%), Gaps = 14/662 (2%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
+ L S+++PTGDQPEAI QL GI G AQ LLG TG+GKTFT++NV+ VN+PTLVLS
Sbjct: 10 FDLVSKYQPTGDQPEAINQLTHGIEAGEKAQILLGATGTGKTFTISNVIKNVNKPTLVLS 69
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
HNKTLA QLYGEFK FFP NAVEYFVSYYDYYQPEAY+P +DTYIEKD +IN EI+KLR
Sbjct: 70 HNKTLAGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 129
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT+SLL R DV+VV+SVS ++G+ +P + V+SL GQ +RD +R LV +
Sbjct: 130 SATSSLLE-RNDVIVVASVSSIFGLGDPTEYKNHVVSLRVGQEIERDALLRKLVNIQFER 188
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N +F+ G FRV GD V+IFPA D A RVEF+ E++R+ D TG G +
Sbjct: 189 NDYDFQRGRFRVHGDVVEIFPASR--DERALRVEFFGDEIDRIREVDALTGEIVGDREHV 246
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
I+PA F+T + + +A I+ +L ++ L+ GK EA+RL +R TYDLEM+RE+G
Sbjct: 247 AIFPATHFMTNDDIMAQATAGIEGELKERLAELENDGKLLEAQRLKQRTTYDLEMMREMG 306
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
Y SGIENYSR+ DGR AGE P+ LLD+FP+DFLLV+DESHVT+PQ+R MY GDR+RK+ L
Sbjct: 307 YTSGIENYSRWMDGRQAGEPPYTLLDFFPKDFLLVVDESHVTMPQVRGMYNGDRARKQQL 366
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
V+YGFRLP+ALDNRPL+ +E E + +Y+SATP YE +++ V V+Q+IRPTGLLDP
Sbjct: 367 VDYGFRLPSALDNRPLKLNEVEQHINQVIYMSATPGPYEAEQTDHV-VQQIIRPTGLLDP 425
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
IDV+P Q+DDL+ EI + IEK ER VTTLTK+MAE+L++YL GI Y+HSD+
Sbjct: 426 TIDVRPIMGQMDDLVGEINQRIEKNERTFVTTLTKKMAEDLTDYLKDLGIKVAYLHSDIK 485
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
TLER IM DLR G YD L+G+NLLREG+D+PEVSLVAILDADKEGFLR+ RSL QT GR
Sbjct: 486 TLERTEIMRDLRLGKYDVLVGINLLREGIDIPEVSLVAILDADKEGFLRNERSLIQTIGR 545
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR+ HG VI YAD +TDSMQ MDETARRR Q+AYN+ HGITP I+K D
Sbjct: 546 AARNSHGSVIMYADSVTDSMQAAMDETARRRQIQIAYNKEHGITPTTIIKPIR------D 599
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARL 662
+ A+ ++ E+ VA+D + ++K E LIA + +M AAAK+LDF +AA L
Sbjct: 600 LIAVSKKNDNAG--EKDDFVASD--FEDMTKEDQEKLIARLEDEMRAAAKKLDFEQAASL 655
Query: 663 RD 664
RD
Sbjct: 656 RD 657
>gi|118756842|ref|ZP_01604613.1| excinuclease ABC, B subunit [Shewanella pealeana ATCC 700345]
gi|118691632|gb|EAV97877.1| excinuclease ABC, B subunit [Shewanella pealeana ATCC 700345]
Length = 667
Score = 713 bits (1841), Expect = 0.0, Method: Composition-based stats.
Identities = 373/671 (55%), Positives = 488/671 (72%), Gaps = 12/671 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
++L S +KP GDQP AI +LV+G+ G+ QTLLGVTGSGKTFTVANV+A ++RPT++++
Sbjct: 6 FQLESMYKPAGDQPTAINKLVEGLESGVACQTLLGVTGSGKTFTVANVIAKMSRPTIIMA 65
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLYGE K FFP NAVEYFVSYYDYYQPEAY+P T T+IEKD ++NA IE++RL
Sbjct: 66 PNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPSTGTFIEKDASVNAHIEQMRL 125
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL RKDV++++SVS +YG+ +P+A+ + ++ L G ++ ++ L E YT
Sbjct: 126 SATKALLE-RKDVVLIASVSAIYGLGDPKAYMKMLLHLREGGNMEQRDILKRLSELQYTR 184
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N +E + G +RV+G+ +DIFPA D A R+E +D E+ERLS FDP TG ++ +
Sbjct: 185 NDIELQRGTYRVRGEVIDIFPA--DSDKNAIRIELFDDEIERLSLFDPLTGHVVKRIARI 242
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
+YP + +VT +E + A I +L + L E+ K E +R+ ERV YD+EM+ ELG
Sbjct: 243 TVYPKSHYVTPRESILAATEDIKQELRDRKKQLLELNKLIEEQRITERVQYDVEMMTELG 302
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSGIENYSRY GR G+ P LLDY P+D LL+IDESHVT+PQI AMY GDRSRK NL
Sbjct: 303 YCSGIENYSRYLSGRAPGDGPPTLLDYLPDDGLLIIDESHVTVPQIGAMYKGDRSRKMNL 362
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFRLP+ALDNRPL+F+EFEAL P+++++SATP+DYE+++S+G I EQ++RPTGLLDP
Sbjct: 363 VEYGFRLPSALDNRPLKFEEFEALMPQSIFVSATPSDYEIDKSDGEIAEQVVRPTGLLDP 422
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
I+V+P QVDDL+ EI + + ERVLVTTLTKRM+E+LSEYL HG+ Y+HSD+D
Sbjct: 423 EIEVRPVGIQVDDLLSEIGKRVAVNERVLVTTLTKRMSEDLSEYLDEHGVKVRYLHSDID 482
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ERV I+ DLR GV+D LIG+NLLREGLD+PEVSLV ILDADKEGFLRS RSL QT GR
Sbjct: 483 TVERVEIIRDLRLGVFDVLIGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGR 542
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR+I+G+VI Y D+IT SM + ET RRR KQ YN +GITP+ +VK + GD
Sbjct: 543 AARNINGKVILYGDRITKSMDKAITETNRRREKQHQYNLDNGITPKGVVKRITDVMDVGD 602
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARL 662
+ D+E G +E A P AD + I +KQM AK L+F EAA +
Sbjct: 603 HQYV--DSERGVAEKEGGYHVAKP-AD------ISHDIDRLEKQMHEHAKNLEFEEAAAV 653
Query: 663 RDEAARLEKKL 673
RD+ +RL ++
Sbjct: 654 RDQVSRLREQF 664
>gi|119944840|ref|YP_942520.1| excinuclease ABC, B subunit [Psychromonas ingrahamii 37]
gi|119863444|gb|ABM02921.1| excinuclease ABC, B subunit [Psychromonas ingrahamii 37]
Length = 670
Score = 713 bits (1841), Expect = 0.0, Method: Composition-based stats.
Identities = 367/671 (54%), Positives = 479/671 (71%), Gaps = 9/671 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
++L S+F P GDQP+AI QL+ G+ G+ QTLLGVTGSGKTFT+AN +A +NRPTL+L+
Sbjct: 5 FQLVSQFSPAGDQPQAIEQLINGLKSGLAFQTLLGVTGSGKTFTLANAIAKLNRPTLILA 64
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLYGE K FFP NAVEYFVSYYDYYQPEAY+P +D++IEKD AINA IE++RL
Sbjct: 65 PNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSSDSFIEKDAAINAHIEQMRL 124
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL RKDV++V+SVS +YG+ +P A+ + ++ L G+ ++ LV+ Y
Sbjct: 125 SATKALLE-RKDVVLVASVSAIYGLGDPTAYLQMMLHLTVGEIISSREILQRLVDLQYNR 183
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N+ E G FRV+G+ +DIFPA + A R+E +D EVE++S FDP TG+ L+ +
Sbjct: 184 NETELSRGTFRVRGEVIDIFPA--DSEKEALRIELFDDEVEQISVFDPLTGQGIDKLARV 241
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
+YP +VT +EQ+ +AV I V+L + E K E +R+ +R YD+EM+ ELG
Sbjct: 242 TVYPKTHYVTPREQILKAVDAIKVELNERKKEFLEQNKLLEEQRISQRTLYDIEMMNELG 301
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSGIENYSRY GR G+ P L DY P+D LL+IDESHVT+PQI AMY GDRSRKENL
Sbjct: 302 YCSGIENYSRYLSGRSEGQAPPTLFDYLPKDALLIIDESHVTVPQIGAMYKGDRSRKENL 361
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
V YGFRLP+ALDNRPL+F EFE + P+T+Y+SATP+DYE+N+S+G I+ Q+IRPTGLLDP
Sbjct: 362 VNYGFRLPSALDNRPLKFAEFEKIAPQTIYVSATPSDYEINKSQGEIIRQVIRPTGLLDP 421
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
+I+V+P QVDDL+ EI + KERVLVTTLTKRMAE+L++YL HGI Y+HSDV+
Sbjct: 422 VIEVRPVTTQVDDLLSEINIRLPLKERVLVTTLTKRMAEDLTDYLHEHGIKARYLHSDVN 481
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ERV I+ DLR G++D LIG+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT GR
Sbjct: 482 TVERVEIIRDLRLGIFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGR 541
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR+++G+ I YA +IT SMQ + T RR Q +N +GI PQ + K + G
Sbjct: 542 AARNLNGKAILYAARITGSMQKAIKVTEDRRELQNKFNIENGIIPQGLSKQVNDVMQLGQ 601
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARL 662
+ + + + G E + D L + IA ++KQM A AK L+F +AA
Sbjct: 602 KNLKKGNLKQGKVAEYKANYQIHSEQDILKQ------IALSEKQMFACAKNLEFEKAALF 655
Query: 663 RDEAARLEKKL 673
RDE +L ++L
Sbjct: 656 RDEVTKLHEQL 666
>gi|39998352|ref|NP_954303.1| excinuclease ABC subunit B [Geobacter sulfurreducens PCA]
gi|81831945|sp|Q747K3|UVRB_GEOSL UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
gi|39985298|gb|AAR36653.1| excinuclease ABC, B subunit [Geobacter sulfurreducens PCA]
Length = 664
Score = 713 bits (1841), Expect = 0.0, Method: Composition-based stats.
Identities = 374/669 (55%), Positives = 483/669 (72%), Gaps = 14/669 (2%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
++L S ++P GDQP AI +L +GI G Q LLGVTGSGKTFT+ANV+AAVNRP LVL+
Sbjct: 4 FRLASDYEPRGDQPRAIAELSEGIVRGDRDQVLLGVTGSGKTFTMANVIAAVNRPALVLA 63
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLYGEF+ FP+NAVEYFVSYYDYYQPEAY+P TDT+IEKD +IN EI+KLR
Sbjct: 64 PNKTLAAQLYGEFRELFPDNAVEYFVSYYDYYQPEAYIPTTDTFIEKDSSINDEIDKLRH 123
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT SLL+ R+DV++V+SVSC+YG+ +P + I H G RD +R LV+ Y
Sbjct: 124 AATRSLLT-RRDVIIVASVSCIYGIGSPAEYQAMHIFFHQGDEYGRDELLRKLVDIQYER 182
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N ++F G FRV+GD V+IFPA EG AYR+EF+ V+ +S DP G L++
Sbjct: 183 NDLDFHRGTFRVRGDIVEIFPAHEGER--AYRIEFFGDTVDAISEIDPLRGVVVQRLTKC 240
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
+YPA+ +V T+E +DRA+ +I DL ++ + +E EA+RL +R +DLEM+ E+G
Sbjct: 241 AVYPASHYVATRETLDRAMEEIRTDLRERLQWFRERNMLVEAQRLEQRTMFDLEMMEEMG 300
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
+C GIENYSRYFDGR GE P+ LLDYFP DF+L +DESH+T+ Q+ MY GDRSRKE L
Sbjct: 301 FCQGIENYSRYFDGRTPGEPPYTLLDYFPRDFILFVDESHITVSQVGGMYRGDRSRKETL 360
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
V YGFRLPAALDNRPL F EF +++Y+SATPADYEL +S GV+VEQ+IRPTGLLDP
Sbjct: 361 VNYGFRLPAALDNRPLTFGEFTERLNQSVYVSATPADYELQQSGGVVVEQVIRPTGLLDP 420
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
+I+V+P QVDDL+ E+ + ERVLVTTLTKRMAE+L++Y G+ Y+HSD+D
Sbjct: 421 VIEVRPATEQVDDLLHEVRETTARGERVLVTTLTKRMAEDLTDYYRDLGVRVRYLHSDID 480
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T++R++I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT GR
Sbjct: 481 TIQRMQIIRDLRMGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSARSLIQTCGR 540
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR+++GRVI YAD +T SMQ +DETARRRA Q A+N HGITPQ + K I
Sbjct: 541 AARNVNGRVIMYADTVTGSMQSCLDETARRRALQEAFNTEHGITPQTVKKGLRTI----- 595
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARL 662
L+S E Y + A+ +Y+S ++ + +K+ML AAK+L+F AA L
Sbjct: 596 ---LESIEERDYY---TVAAVAETREEYISADEIPKRVKKLRKEMLDAAKKLEFERAADL 649
Query: 663 RDEAARLEK 671
RD+ +LE+
Sbjct: 650 RDQIKKLEE 658
>gi|76796770|ref|ZP_00779123.1| Excinuclease ABC, B subunit [Thermoanaerobacter ethanolicus ATCC
33223]
gi|114844357|ref|ZP_01454808.1| excinuclease ABC, B subunit [Thermoanaerobacter ethanolicus X514]
gi|76587839|gb|EAO64258.1| Excinuclease ABC, B subunit [Thermoanaerobacter ethanolicus ATCC
33223]
gi|114805635|gb|EAU57425.1| excinuclease ABC, B subunit [Thermoanaerobacter ethanolicus X514]
Length = 661
Score = 712 bits (1837), Expect = 0.0, Method: Composition-based stats.
Identities = 375/674 (55%), Positives = 482/674 (71%), Gaps = 17/674 (2%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
+KL S FKPTGDQP+AI +LV+G+ +G QTLLGVTGSGKTFT+AN++ +NRPTLV++
Sbjct: 4 FKLVSNFKPTGDQPQAIDKLVEGVKKGYRFQTLLGVTGSGKTFTMANIIQKLNRPTLVIA 63
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
HNKTLAAQLY EFK FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEKD +IN EI+KLR
Sbjct: 64 HNKTLAAQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKDASINEEIDKLRH 123
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
ATA+L R+DV++V+SVSC+YG+ +P + ++SL G DRD I+ LV+ Y
Sbjct: 124 SATAALFE-RRDVIIVASVSCIYGLGDPVDYENLMLSLRPGMIKDRDEIIKKLVDIQYER 182
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N V F G FRV+GD ++IFPA + A RVE + E++R++ D TG GL +
Sbjct: 183 NDVNFTRGKFRVRGDVIEIFPA--SFSNKAIRVELFGDEIDRIAEIDVLTGEVLGLRKHV 240
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
I+PA+ + T+K++++RA+ I +L + LK+ GK EA+RL +R YDLEM++E+G
Sbjct: 241 AIFPASHYATSKDKLERAIKSIREELEQRYKELKDAGKIVEAERLRQRTNYDLEMLQEMG 300
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YC GIENYSR+ GR G P+ LLDYFP+DFL+ IDESHVTIPQIR MY GDRSRKE L
Sbjct: 301 YCQGIENYSRHISGRPPGSPPYTLLDYFPKDFLIFIDESHVTIPQIRGMYNGDRSRKEAL 360
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFRLP+A DNRPL F+EFE + +++SATP YEL SE V VEQLIRPTGL+DP
Sbjct: 361 VEYGFRLPSAFDNRPLTFEEFEKRINQVIFVSATPGPYELEHSEQV-VEQLIRPTGLIDP 419
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
+ VKP QVDDL+ EI + ++K RVLVTTLTK+MAE+L++YL GI Y+HSD++
Sbjct: 420 EVIVKPVKGQVDDLIGEIRKTVDKGFRVLVTTLTKKMAEDLTDYLKDMGIKVKYLHSDIE 479
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ERV I+ DLR G +D LIG+NLLREGLD+PEV+LVAILDADKEGFLRS SL QT GR
Sbjct: 480 TIERVEIIRDLRLGKFDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGR 539
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR+ GRVI YAD +T+SM+ +DET RRR Q+ YN+ HGITP+ ++K G D
Sbjct: 540 AARNAEGRVIMYADTVTNSMKRAIDETNRRRKIQMEYNKKHGITPKTVIK------GVRD 593
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARL 662
V E + DP +++ I +K+M AA EL F +AA+L
Sbjct: 594 VIEATHVAEEEQKYRRKKVKTYDP-------EIIKSTIEQLEKEMKEAAIELQFEKAAKL 646
Query: 663 RDEAARLEKKLEQL 676
RD L+K+LE++
Sbjct: 647 RDVIFELKKQLEEV 660
>gi|37525442|ref|NP_928786.1| excinuclease ABC subunit B [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|81834028|sp|Q7N6Q1|UVRB_PHOLL UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
gi|36784870|emb|CAE13784.1| exinuclease ABC subunit B [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 669
Score = 712 bits (1837), Expect = 0.0, Method: Composition-based stats.
Identities = 378/671 (56%), Positives = 477/671 (71%), Gaps = 10/671 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
+KL S F+P GDQPEAIRQL +G+ +G+ QTLLGVTGSGKTFTVANV+A +NRPT+VL+
Sbjct: 5 FKLHSDFQPGGDQPEAIRQLQEGLEDGLAHQTLLGVTGSGKTFTVANVIANLNRPTMVLA 64
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLY E K FFPEN+VEYFVSYYDYYQPEAY+P +DT+IEKD ++N IE++RL
Sbjct: 65 PNKTLAAQLYSEMKDFFPENSVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL R+DV+VV+SVS +YG+ +P+++ + ++ L G D+ +R L E YT
Sbjct: 125 SATKALLE-RRDVIVVASVSAIYGLGDPDSYLKMMLHLTNGMMIDQRSILRRLAELQYTR 183
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N F+ G FRV+G+ +DIFPA D A RVE +D EVERLS FDP TG+ +
Sbjct: 184 NDQAFQRGTFRVRGEVIDIFPAES--DEHALRVELFDDEVERLSLFDPLTGQVQYHVPRY 241
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
+YP +VT +E++ +A+ I ++L + L GK E +R+ +R +DLEM+ ELG
Sbjct: 242 TVYPKTHYVTPRERIIQAMEAIKIELEQRRKVLLANGKLLEEQRITQRTQFDLEMMNELG 301
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSGIENYSRY GR GE P L DY P D LLV+DESHVTIPQI MY GDRSRKE L
Sbjct: 302 YCSGIENYSRYLSGRTEGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRSRKETL 361
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFR+P+ALDNRPLRF+EFEAL P+T+YISATP YEL +S G +VEQ++RPTGLLDP
Sbjct: 362 VEYGFRMPSALDNRPLRFEEFEALAPQTIYISATPGKYELEKSSGDVVEQVVRPTGLLDP 421
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
++V+P A QVDDL+ EI K ERVLVTTLTKRMAE+L+EYL HG Y+HSD+D
Sbjct: 422 EVEVRPVATQVDDLLSEIRIRAVKNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT GR
Sbjct: 482 TVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR++HG+ I Y DKITDSM + ET RRRAKQ +NE HGI P+ + K I G
Sbjct: 542 AARNLHGKAILYGDKITDSMAKAIGETERRRAKQQIFNEKHGIVPKGLNKKINDILQIGQ 601
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARL 662
+ G VA LS +LE+ I + +M A++L+F +AA +
Sbjct: 602 PAG-------GKRKGRGKAVATAETFSNLSAKELESKIRELEAKMYQHAQDLEFEQAASV 654
Query: 663 RDEAARLEKKL 673
RD+ L ++
Sbjct: 655 RDQVQALREQF 665
>gi|121308602|dbj|BAF43695.1| excision nuclease subunit B [Vibrio fischeri]
Length = 676
Score = 712 bits (1837), Expect = 0.0, Method: Composition-based stats.
Identities = 371/672 (55%), Positives = 483/672 (71%), Gaps = 5/672 (0%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
Y+L S ++P GDQP+AI+ L +G+ G+ QTLLGVTGSGKTFT+ANV+A RPT++++
Sbjct: 5 YELVSNYQPAGDQPQAIKTLNEGLENGLAHQTLLGVTGSGKTFTLANVIAHSGRPTIIMA 64
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
HNKTLAAQLYGE KAFFP NAVEYFVSY+DYYQPEAY+P TDT+IEKD ++N IE++RL
Sbjct: 65 HNKTLAAQLYGEMKAFFPNNAVEYFVSYFDYYQPEAYVPTTDTFIEKDSSVNEHIEQMRL 124
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL RKD ++++SVS +YG+ +P+A+ ++ L G ++ +R L E Y
Sbjct: 125 SATKALLE-RKDAIIIASVSAIYGLGDPKAYLSMMLHLRRGDIINQRDMLRRLAELQYKR 183
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGL-LSE 241
N + FE G FRV+G+ +DIFPA ++ + R+E +D EVER+S FDP TG +
Sbjct: 184 NDMAFERGTFRVRGEVLDIFPAESEHEAI--RIEMFDDEVERISKFDPLTGSIIAKDMPR 241
Query: 242 LKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIREL 301
IYP +VT +EQV A+ KI VDL + L E K E +R+ +R +D+EM+ EL
Sbjct: 242 CTIYPKTHYVTPREQVLDAIEKIKVDLAIRQKELLENNKLVEEQRITQRTQFDIEMMNEL 301
Query: 302 GYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKEN 361
G+CSGIENYSRY GR GE P L DY P+D LL+IDESH+T+ QI AMY GDRSRKEN
Sbjct: 302 GFCSGIENYSRYLSGRPEGEAPPTLFDYLPQDGLLIIDESHITVSQIGAMYKGDRSRKEN 361
Query: 362 LVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLD 421
LVEYGFRLP+ALDNRPLRF+EFEAL P+T+Y+SATP YE+ +S+G I EQ++RPTGLLD
Sbjct: 362 LVEYGFRLPSALDNRPLRFEEFEALAPQTIYVSATPGKYEIEKSDGEIAEQVVRPTGLLD 421
Query: 422 PIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDV 481
P+I+V+P A QVDDL+ EI + ERVLVTTLTKRMAE+L+EYL HG+ Y+HSD+
Sbjct: 422 PVIEVRPVATQVDDLLSEIRIRTKNNERVLVTTLTKRMAEDLTEYLDEHGVKVRYLHSDI 481
Query: 482 DTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 541
DT+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT G
Sbjct: 482 DTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 541
Query: 542 RAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEG 601
RAAR++ G+ I YADKIT SM+ + ET RRR KQ +NEA GI PQ + K+ A I G
Sbjct: 542 RAARNLEGKAILYADKITGSMEKAIGETERRREKQQLHNEALGIVPQALKKDVADILELG 601
Query: 602 DVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAAR 661
D++ + + I+ S + +S +LE I + +M AK+L+F +AA+
Sbjct: 602 DMTKNKRKVVA-PKIKLSEVAEEGASYSSMSPQQLEKAIQKLESKMYQHAKDLEFEQAAQ 660
Query: 662 LRDEAARLEKKL 673
+RDE L K+
Sbjct: 661 VRDEIDNLRKQF 672
>gi|125972830|ref|YP_001036740.1| excinuclease ABC, B subunit [Clostridium thermocellum ATCC 27405]
gi|125713055|gb|ABN51547.1| excinuclease ABC, B subunit [Clostridium thermocellum ATCC 27405]
Length = 660
Score = 711 bits (1836), Expect = 0.0, Method: Composition-based stats.
Identities = 378/671 (56%), Positives = 485/671 (72%), Gaps = 16/671 (2%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
+KL S +KP GDQPEAI +LV+GIN G QTLLGVTGSGKTFT+ANV+ V +PTLV++
Sbjct: 4 FKLVSDYKPCGDQPEAIDKLVEGINRGYRGQTLLGVTGSGKTFTMANVIERVQKPTLVIA 63
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
HNKTLAAQL EFK FFP N VEYFVSYYDYYQPEAY+P TDTYIEKD +IN EI+KLR
Sbjct: 64 HNKTLAAQLCSEFKEFFPNNCVEYFVSYYDYYQPEAYIPATDTYIEKDSSINDEIDKLRH 123
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
ATA+L R+DV++V+SVSC+YG+ +PE +++ ++SL G DRD IR LV+ Y
Sbjct: 124 SATAALFE-RRDVIIVASVSCIYGLGDPEDYTDLMLSLRPGMIKDRDEIIRKLVDIQYER 182
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N+++F+ G FRV+GD ++IFPA D V RVEF+ E++R++ D TG G+ S +
Sbjct: 183 NEIDFKRGKFRVRGDILEIFPASSS-DKVI-RVEFFGEEIDRITEVDSLTGEITGVCSHV 240
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
I+PA+ + TTK ++ RA+ I+ +L +V LK GK EA+RL +R YDLEM++E+G
Sbjct: 241 AIFPASHYATTKAKMQRAIASIEQELEERVRELKSQGKLLEAQRLEQRTRYDLEMMQEIG 300
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
+C GIENYSR+ GR G PF L+DYFP+DFLL+IDESHVTIPQI AMY GDRSRKE+L
Sbjct: 301 FCQGIENYSRHISGRAPGSPPFTLIDYFPKDFLLIIDESHVTIPQIGAMYNGDRSRKESL 360
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFRLP+A DNRPL F+EFE + +++SATPA YE S+ IVEQ+IRPTGLLDP
Sbjct: 361 VEYGFRLPSAFDNRPLTFEEFEKKINQVIFVSATPAKYEREHSQQ-IVEQIIRPTGLLDP 419
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
I VKP Q+DDL+ EI+ ++K +RV++TTLTK+MAE+L++YL Y+HSD+D
Sbjct: 420 EIVVKPVKGQIDDLIGEISERVQKNQRVMITTLTKKMAEDLTDYLRELDFKVEYLHSDID 479
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ER+ I+ +LR GV+D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS SL QT GR
Sbjct: 480 TIERMEIIRNLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSETSLIQTIGR 539
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR++ G+VI YAD ITDSM+ +DET RRR Q YN+ HGITP+ + K G D
Sbjct: 540 AARNVEGKVIMYADTITDSMRRAIDETNRRRKIQSEYNQKHGITPKSVQK------GIRD 593
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARL 662
V + E A + D D + K ++ LI +M AAA EL F AA L
Sbjct: 594 VIEITKVAEEDA----KYFIRGD--EDSMDKDEVLDLIEKLTNEMKAAAAELQFERAAEL 647
Query: 663 RDEAARLEKKL 673
RD+ A L+KK+
Sbjct: 648 RDKIAELKKKI 658
>gi|71737418|ref|YP_274169.1| excinuclease ABC, B subunit [Pseudomonas syringae pv. phaseolicola
1448A]
gi|90111045|sp|Q48KA6|UVRB_PSE14 UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
gi|71557971|gb|AAZ37182.1| excinuclease ABC, B subunit [Pseudomonas syringae pv. phaseolicola
1448A]
Length = 671
Score = 711 bits (1836), Expect = 0.0, Method: Composition-based stats.
Identities = 368/672 (54%), Positives = 491/672 (73%), Gaps = 6/672 (0%)
Query: 2 DYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVL 61
+++L +RF+P GDQPEAIRQLV+GI+ G+ QTLLGVTGSGKTF++ANV++ V RPTLVL
Sbjct: 3 EFQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQVKRPTLVL 62
Query: 62 SHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLR 121
+ NKTLAAQLYGEFKAFFP NAVEYFVSYYDYYQPEAY+P +DT+IEKD +IN IE++R
Sbjct: 63 APNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMR 122
Query: 122 LRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYT 181
L AT +LL RKD ++V++VSC+YG+ +PE + V+ + G + D+ +R L + YT
Sbjct: 123 LSATKALLE-RKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQYT 181
Query: 182 NNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSE 241
N ++F FRV+GD +DI+PA D A RVE +D EVE LS FDP TG L
Sbjct: 182 RNDMDFARATFRVRGDVIDIYPAES--DLEAIRVELFDDEVESLSAFDPLTGEVIRKLPR 239
Query: 242 LKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIREL 301
YP + +VT +E + A+ I V+L ++++L+ K EA+RL +R +DLEM+ EL
Sbjct: 240 FTFYPKSHYVTPRETLIEAMEGIKVELQERLEYLRTQNKLVEAQRLEQRTRFDLEMMLEL 299
Query: 302 GYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKEN 361
GYC+GIENYSRY GR +G P L DY P D LLVIDESHV++PQ+ AMY GDRSRKE
Sbjct: 300 GYCNGIENYSRYLSGRPSGAPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKET 359
Query: 362 LVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLD 421
LVEYGFRLP+ALDNRP+RFDE+EA++P+T+++SATP +YE + G +VEQ++RPTGL+D
Sbjct: 360 LVEYGFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRVVEQVVRPTGLVD 418
Query: 422 PIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDV 481
P I+++P QVDDL+ EI + +ERVLVTTLTKRM+E+L++YL HG+ Y+HSD+
Sbjct: 419 PQIEIRPALTQVDDLLSEIHKRTALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDI 478
Query: 482 DTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 541
DT+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT G
Sbjct: 479 DTVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIG 538
Query: 542 RAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEG 601
RAAR+++GR I YAD+IT SM+ + ET RRR KQLA+N HGITP+ + K+ A I
Sbjct: 539 RAARNLNGRAILYADRITGSMERAIGETERRRDKQLAFNHEHGITPKGVFKDVADIMEGA 598
Query: 602 DVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAAR 661
V +S G + +++ A + S ++ I +++M A++L+F AA+
Sbjct: 599 TVPGSRSKKRKG--MAKAAEENARYENELRSPSEINKRIRQLEEKMYQLARDLEFEAAAQ 656
Query: 662 LRDEAARLEKKL 673
+RDE +L ++L
Sbjct: 657 MRDEIGKLRERL 668
>gi|68551502|ref|ZP_00590897.1| Excinuclease ABC, B subunit [Prosthecochloris aestuarii DSM 271]
gi|68241436|gb|EAN23702.1| Excinuclease ABC, B subunit [Prosthecochloris aestuarii DSM 271]
Length = 683
Score = 711 bits (1835), Expect = 0.0, Method: Composition-based stats.
Identities = 359/669 (53%), Positives = 490/669 (73%), Gaps = 4/669 (0%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
Y+L S ++P GDQP AI L G+ +G P QTLLGVTGSGKTFT++NV+A +P LV+S
Sbjct: 8 YRLESSYEPMGDQPGAIDALSAGVRDGEPCQTLLGVTGSGKTFTMSNVIARAGKPVLVIS 67
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
HNKTLAAQLYGE K FFP NAVEYF+SYYD+YQPEAY+P D YI KD+ IN EIE+LRL
Sbjct: 68 HNKTLAAQLYGELKQFFPHNAVEYFISYYDFYQPEAYIPSMDKYIAKDLRINEEIERLRL 127
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
RAT++LLSGR+DV+VVSSVSC+YG+ +PE + +++ L TG DR+ F++ LV+ ++
Sbjct: 128 RATSALLSGRRDVIVVSSVSCIYGLGSPEDWMAQILELRTGMDMDREAFLQRLVDLHFVR 187
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
+ +E SG FRV+GD +D+ PA ++ A RVEF+ E++RL F+PRTG
Sbjct: 188 DDMELSSGKFRVRGDVIDLVPA---HEEDALRVEFYGSEIDRLQLFNPRTGEIIEEQEYA 244
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
IYPA FV K +++ A+ I+ +L +++ + + EA+RL ER YDLEMI+ELG
Sbjct: 245 CIYPARQFVADKARLEAAMLSIENELAGRLNTFRAEDRLVEARRLEERTRYDLEMIKELG 304
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSGIENYS + GR AGERP+CLLDYF +D+++VIDESHV++PQIR MY GDRSRK L
Sbjct: 305 YCSGIENYSSHLSGRKAGERPYCLLDYFQDDYMVVIDESHVSLPQIRGMYAGDRSRKTIL 364
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VE+GFRLP+ALDNRPLRF+EFE + P+ + +SATP DYEL RS+GV+VEQL+RPTGLLDP
Sbjct: 365 VEHGFRLPSALDNRPLRFEEFEEVVPQMICVSATPGDYELTRSQGVVVEQLVRPTGLLDP 424
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
I V+P + Q+D+L+EEI + K + LV T+TKRM+E+L ++L + G+ + Y+HS++
Sbjct: 425 EITVRPVSGQIDNLLEEIRQNTAKGFKTLVMTITKRMSEDLHDFLRKAGVRSRYLHSEIK 484
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
+LER++I+ +LR G D L+GVNLLREGLDLPEV+LVAILDADK+GFLR RSL Q AGR
Sbjct: 485 SLERIQILRELRAGDVDVLVGVNLLREGLDLPEVALVAILDADKQGFLRDARSLMQIAGR 544
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR++ GRV+FYAD+IT SM+ +DET RRR Q +NE HGI P+ I+K+ +
Sbjct: 545 AARNVEGRVVFYADRITPSMREVIDETDRRRKVQQQFNEEHGIVPRSIIKSVDQVLNTTS 604
Query: 603 VS-ALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAAR 661
V+ A + +++ + + + D LS +L ++ K +M AA+ +++ +AA
Sbjct: 605 VADAEERFRRKRLGLQQKNERLLEGVIDTLSPEELSSMAEDLKCEMQEAAESMEYEKAAW 664
Query: 662 LRDEAARLE 670
LRDE +++E
Sbjct: 665 LRDEISKIE 673
>gi|77360053|ref|YP_339628.1| ATP-dependent DNA excision repair enzyme UvrAC [Pseudoalteromonas
haloplanktis TAC125]
gi|90111047|sp|Q3IKF4|UVRB_PSEHT UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
gi|76874964|emb|CAI86185.1| ATP-dependent DNA excision repair enzyme UvrAC [Pseudoalteromonas
haloplanktis TAC125]
Length = 664
Score = 711 bits (1834), Expect = 0.0, Method: Composition-based stats.
Identities = 366/671 (54%), Positives = 479/671 (71%), Gaps = 13/671 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
++L S FKP GDQP AI QL +G+ G+ QTLLG TG+GKTFT+AN++ +NRPT++++
Sbjct: 5 FQLKSHFKPAGDQPTAIAQLCEGLEAGLAHQTLLGATGTGKTFTMANIINDLNRPTIIMA 64
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
HNKTLAAQLYGE K FFP+NAVEYFVSYYDYYQPEAY+ +DT+IEKD +IN IE++RL
Sbjct: 65 HNKTLAAQLYGEMKEFFPKNAVEYFVSYYDYYQPEAYVVSSDTFIEKDASINEHIEQMRL 124
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL R+D ++V+SVS +YG+ +P+++ + ++ L G++ D+ +R L E YT
Sbjct: 125 SATKALLE-RRDTIIVASVSAIYGLGDPKSYMKMMLLLKVGEKVDQRDMLRRLAEIQYTR 183
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N V+F G +RV+G+ VDIFPA A RVE +D E+ERLS FDP TG +
Sbjct: 184 NDVDFSRGTYRVRGEVVDIFPAES--STFAIRVEMFDDEIERLSIFDPLTGAIEKHIVRT 241
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
IYP +VT +E++ A+ KI +L + L K E +R+ +R YD+EM+RELG
Sbjct: 242 TIYPKTHYVTPREKILGAIEKIQEELKDRRAQLLSANKLVEEQRVTQRTQYDIEMMRELG 301
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSGIENYSRY GR G+ P LLDY P+D L++IDESHVT+ QI AMY GDRSRKENL
Sbjct: 302 YCSGIENYSRYLSGRTPGDPPPTLLDYLPDDALMIIDESHVTVSQIGAMYKGDRSRKENL 361
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFR+P+A+DNRPLRF+EFEA++P+T+Y+SATP D+EL+R G I EQ+IRPTGLLDP
Sbjct: 362 VEYGFRMPSAMDNRPLRFEEFEAISPQTIYVSATPGDFELDRCVGAIAEQVIRPTGLLDP 421
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
+I+V+P +QVDDL+ EI + +EK ERVLVTTLTKRM+E+L++YL H + Y+HSD+D
Sbjct: 422 LIEVRPVGDQVDDLLSEIYKSVEKGERVLVTTLTKRMSEDLTDYLSEHNVKVRYLHSDID 481
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ERV I+ DLR GV+D L+G+NLLREGLD+PEV+LVAILDADKEGFLRS RS+ QT GR
Sbjct: 482 TVERVEIIRDLRAGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSARSIIQTVGR 541
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AARH+ GR I Y D+IT SM MDETARRR Q AYN HGI P + K I D
Sbjct: 542 AARHLEGRAILYGDRITKSMAKAMDETARRREIQHAYNIEHGIEPHSLAKK---ILDSMD 598
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARL 662
V ++ I + S LS ++ I +M A A +L+F +AA +
Sbjct: 599 VGEEAGPKDNLRLIRKES-------KKVLSAKEITVQIKQLDSKMHAYASDLEFEKAASV 651
Query: 663 RDEAARLEKKL 673
RDE L+++L
Sbjct: 652 RDEIHELQQQL 662
>gi|117621062|ref|YP_856963.1| excinuclease ABC, B subunit [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gi|117562469|gb|ABK39417.1| excinuclease ABC, B subunit [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
Length = 670
Score = 711 bits (1834), Expect = 0.0, Method: Composition-based stats.
Identities = 372/673 (55%), Positives = 489/673 (72%), Gaps = 12/673 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
++L S+F+P GDQP AI QL+ GI G+ QTLLGVTGSGKTFT+ANV+A +NRPT++L+
Sbjct: 5 FQLASQFQPAGDQPRAIAQLLDGIESGLAHQTLLGVTGSGKTFTMANVIATLNRPTMILA 64
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLYGE K FFP+N+VEYFVSYYDYYQPEAY+P TDT+IEKD +IN IE++RL
Sbjct: 65 PNKTLAAQLYGEMKEFFPDNSVEYFVSYYDYYQPEAYVPTTDTFIEKDASINDHIEQMRL 124
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL R+DV++V+SVS +YG+ +P+A+ ++ L G ++ +R L E YT
Sbjct: 125 SATKALLE-RRDVVIVASVSAIYGLGDPQAYLSMMLHLKVGDLINQRDILRRLAELQYTR 183
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N + F+ G FRV+G+ +DI+PA D +A RVE +D EVERLS FDP TG +
Sbjct: 184 NDMAFQRGTFRVRGEVIDIYPAES--DKLALRVELFDEEVERLSLFDPLTGAIEQTVVRY 241
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
IYP + T +E + A+ I +L ++ + L +GK E +R+ +R +D+EM++ELG
Sbjct: 242 TIYPKTHYATPRETILGAIEHIKEELKSRREQLLSLGKLVEEQRISQRTQFDIEMMQELG 301
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSGIENYSRY GR GE P L DY P D LL+IDESHVT+PQI AM+ GDRSRKE L
Sbjct: 302 YCSGIENYSRYLSGRAPGEPPPTLFDYLPGDGLLIIDESHVTVPQIGAMFKGDRSRKETL 361
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFRLP+ALDNRPL+FDEFEAL P+T+++SATP YEL +S G +V+Q++RPTGLLDP
Sbjct: 362 VEYGFRLPSALDNRPLKFDEFEALMPQTVFVSATPGPYELEKSGGDVVQQVVRPTGLLDP 421
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
I+V+P QVDDL+ EI + + +ERVLVTTLTKRMAE+L+EYL H + Y+HSD+D
Sbjct: 422 EIEVRPVTTQVDDLLSEIRKRVAVEERVLVTTLTKRMAEDLTEYLADHEVRVRYLHSDID 481
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT GR
Sbjct: 482 TVERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTRSLIQTIGR 541
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR+++G+VI Y D IT+SMQ+ ++ET RRRA Q A+N HGITP + K+ + D
Sbjct: 542 AARNLNGKVILYGDTITNSMQVAIEETERRRALQHAHNLEHGITPTGLNKSVGDVM---D 598
Query: 603 VSALQSDTESGAYIEESSMVAADPLADY--LSKPKLEALIASTKKQMLAAAKELDFLEAA 660
+ +S +SG S AA+P +Y S ++ I ++QM A++L+F +AA
Sbjct: 599 MGGSRSAGKSG----RGSRKAAEPQGEYHARSASEISKEIKRMEEQMFQHARDLEFEQAA 654
Query: 661 RLRDEAARLEKKL 673
LRD+ RL +L
Sbjct: 655 ALRDQIQRLRNEL 667
>gi|116051134|ref|YP_790035.1| excinuclease ABC subunit B [Pseudomonas aeruginosa UCBPP-PA14]
gi|115586355|gb|ABJ12370.1| excinuclease ABC subunit B [Pseudomonas aeruginosa UCBPP-PA14]
Length = 670
Score = 710 bits (1833), Expect = 0.0, Method: Composition-based stats.
Identities = 373/671 (55%), Positives = 484/671 (72%), Gaps = 7/671 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
++L SRFKP GDQPEAIRQ+V+G+ G+ QTLLGVTGSGKTF++ANV+A V RPTLVL+
Sbjct: 4 FQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLA 63
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLYGEFK FFP N+VEYFVSYYDYYQPEAY+P +DTYIEKD +IN IE++RL
Sbjct: 64 PNKTLAAQLYGEFKTFFPHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQMRL 123
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL R D ++V++VS +YG+ +P ++ + V+ L G R D+ +R L YT
Sbjct: 124 SATKALLE-RPDAIIVATVSSIYGLGDPASYLKMVLHLDRGDRIDQRELLRRLTSLQYTR 182
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N ++F FRV+GD +DIFPA D A RVE +D EVE LS FDP TG L
Sbjct: 183 NDMDFARATFRVRGDVIDIFPAES--DLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRF 240
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
YP + +VT +E + AV +I +L ++D+L+ K EA+RL +R +DLEMI ELG
Sbjct: 241 TFYPKSHYVTPRETLLEAVDQIKAELKERLDYLRNNNKLVEAQRLEQRTRFDLEMILELG 300
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YC+GIENYSRY GR GE P L DY P + LLVIDESHV++PQ+ AM+ GDRSRKE L
Sbjct: 301 YCNGIENYSRYLSGRAPGEPPPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETL 360
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFRLP+ALDNRPLRF+E+EA++P+T+++SATP YE + G I+EQ++RPTGL+DP
Sbjct: 361 VEYGFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEAEHA-GRIIEQVVRPTGLVDP 419
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
I+V+P QVDDL+ +I + + K ERVLVTTLTKRMAE+L++YL H + Y+HSD+D
Sbjct: 420 EIEVRPAMTQVDDLLSQIRQRVAKDERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDID 479
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT GR
Sbjct: 480 TVERVEIIRDLRAGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 539
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR++HG+ I YAD +T SMQ +DET RRRAKQ+A+NEAHGI P+ + K+ I
Sbjct: 540 AARNLHGKAILYADNVTGSMQRAIDETERRRAKQIAFNEAHGIVPKGVRKDIKDILEGAV 599
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARL 662
V + + A + E S + L S ++ I +++M A++L+F AA+L
Sbjct: 600 VPGARGKRKGVAKVAEESGRYENELR---SPSEISKRIRQLEEKMYQLARDLEFEAAAQL 656
Query: 663 RDEAARLEKKL 673
RDE L ++L
Sbjct: 657 RDEIQTLRERL 667
>gi|26988700|ref|NP_744125.1| excinuclease ABC subunit B [Pseudomonas putida KT2440]
gi|81840710|sp|Q88LF9|UVRB_PSEPK UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
gi|24983488|gb|AAN67589.1|AE016388_9 excinuclease ABC, B subunit [Pseudomonas putida KT2440]
Length = 671
Score = 710 bits (1833), Expect = 0.0, Method: Composition-based stats.
Identities = 367/672 (54%), Positives = 492/672 (73%), Gaps = 6/672 (0%)
Query: 2 DYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVL 61
+++L +RF+P GDQPEAIRQLV+GI G+ QTLLGVTGSGKTF++ANV+ V RPTLVL
Sbjct: 3 EFQLVTRFQPAGDQPEAIRQLVEGIEAGLSHQTLLGVTGSGKTFSIANVIQQVQRPTLVL 62
Query: 62 SHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLR 121
+ NKTLAAQLYGEFKAFFP NAVEYFVSYYDYYQPEAY+P +DT+IEKD +IN IE++R
Sbjct: 63 APNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMR 122
Query: 122 LRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYT 181
L AT +LL R+D ++V++VSC+YG+ +PE + + V+ + G + D+ +R L + YT
Sbjct: 123 LSATKALLE-RRDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQYT 181
Query: 182 NNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSE 241
N+++F FRV+GD +DIFPA D A R+E +D EVE ++ FDP TG + L
Sbjct: 182 RNEMDFARATFRVRGDVIDIFPAES--DLEAIRIELFDDEVENIAAFDPLTGEVFRKLPR 239
Query: 242 LKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIREL 301
YP + +VT +E + AV I +L ++++L + K EA+RL +R +DLEMI EL
Sbjct: 240 FTFYPKSHYVTPRETLLEAVEGIKEELKERLEYLHKANKLVEAQRLEQRTRFDLEMILEL 299
Query: 302 GYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKEN 361
GYC+GIENYSRY GR AG P L DY P D LLVIDESHV++PQ+ AMY GDRSRKE
Sbjct: 300 GYCNGIENYSRYLSGRPAGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKET 359
Query: 362 LVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLD 421
LVEYGFR+P+ALDNRP+RFDE+E ++P+T+++SATP YE + G +VEQ++RPTGL+D
Sbjct: 360 LVEYGFRMPSALDNRPMRFDEWEDVSPQTIFVSATPGPYEAEHA-GRVVEQVVRPTGLVD 418
Query: 422 PIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDV 481
P ++V+P QVDDL+ EI + + ERVL TTLTKRMAE+LS+YL H + Y+HSD+
Sbjct: 419 PQVEVRPALTQVDDLLSEIRKRVAAGERVLATTLTKRMAEDLSDYLADHDVRVRYLHSDI 478
Query: 482 DTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 541
DT+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT G
Sbjct: 479 DTVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 538
Query: 542 RAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEG 601
RAAR+++GR I YAD +T SMQ +DET RRR KQ+A+NEA+GI P+ +VK+ I
Sbjct: 539 RAARNLNGRAILYADNVTGSMQRAIDETERRREKQIAFNEANGIVPKGVVKDITDIMEGA 598
Query: 602 DVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAAR 661
V +S G + +++ +A A+ + ++ I +++M+ A++L+F AA+
Sbjct: 599 TVPGARSKKRKG--MAKAAEESARYEAELRTPGEITKRIKQLEEKMMQFARDLEFEAAAQ 656
Query: 662 LRDEAARLEKKL 673
LRDE A+L ++L
Sbjct: 657 LRDEIAQLRERL 668
>gi|59711543|ref|YP_204319.1| excinuclease ABC subunit B [Vibrio fischeri ES114]
gi|75507048|sp|Q5E6B5|UVRB_VIBF1 UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
gi|59479644|gb|AAW85431.1| excinuclease ABC subunit B [Vibrio fischeri ES114]
Length = 676
Score = 710 bits (1833), Expect = 0.0, Method: Composition-based stats.
Identities = 370/672 (55%), Positives = 482/672 (71%), Gaps = 5/672 (0%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
Y+L S ++P GDQP+AI+ L +G+ G+ QTLLGVTGSGKTFT+ANV+A RPT++++
Sbjct: 5 YELVSNYQPAGDQPQAIKTLNEGLENGLAHQTLLGVTGSGKTFTLANVIAHSGRPTIIMA 64
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
HNKTLAAQLYGE KAFFP NAVEYFVSY+DYYQPEAY+P TDT+IEKD ++N IE++RL
Sbjct: 65 HNKTLAAQLYGEMKAFFPNNAVEYFVSYFDYYQPEAYVPTTDTFIEKDSSVNEHIEQMRL 124
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL RKD ++++SVS +YG+ +P+A+ ++ L G ++ +R L E Y
Sbjct: 125 SATKALLE-RKDAIIIASVSAIYGLGDPKAYLSMILHLRRGDIINQRDMLRRLAELQYKR 183
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGL-LSE 241
N + FE G FRV+G+ +DIFPA ++ + R+E +D EVER+S FDP TG +
Sbjct: 184 NDMAFERGTFRVRGEVLDIFPAESEHEAI--RIEMFDDEVERISKFDPLTGSIITKDMPR 241
Query: 242 LKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIREL 301
IYP +VT +EQV A+ KI VDL + L E K E +R+ +R +D+EM+ EL
Sbjct: 242 CTIYPKTHYVTPREQVLDAIEKIKVDLAIRQKELLENNKLVEEQRITQRTQFDIEMMNEL 301
Query: 302 GYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKEN 361
G+CSGIENYSRY GR GE P L DY P+D LL+IDESH+T+ QI AMY GDRSRKEN
Sbjct: 302 GFCSGIENYSRYLSGRPEGEAPPTLFDYLPQDGLLIIDESHITVSQIGAMYKGDRSRKEN 361
Query: 362 LVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLD 421
LVEYGFRLP+ALDNRPLRF+EFEAL P+T+Y+SATP YE+ +S+G I EQ++RPTGLLD
Sbjct: 362 LVEYGFRLPSALDNRPLRFEEFEALAPQTIYVSATPGKYEIEKSDGEIAEQVVRPTGLLD 421
Query: 422 PIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDV 481
P+I+V+P A QVDDL+ EI + ERVLVTTLTKRMAE+L+EYL HG+ Y+HSD+
Sbjct: 422 PVIEVRPVATQVDDLLSEIRIRTKNNERVLVTTLTKRMAEDLTEYLDEHGVKVRYLHSDI 481
Query: 482 DTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 541
DT+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT G
Sbjct: 482 DTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 541
Query: 542 RAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEG 601
RAAR++ G+ I YADKIT SM+ + ET RRR KQ +NE GI PQ + K+ A I G
Sbjct: 542 RAARNLEGKAILYADKITGSMEKAIGETERRREKQQLHNETLGIVPQALKKDVADILELG 601
Query: 602 DVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAAR 661
D++ + + I+ S + +S +LE I + +M AK+L+F +AA+
Sbjct: 602 DMTKNKRKVVA-PKIKLSEVAEEGASYSAMSPQQLEKAIQKLESKMYQHAKDLEFEQAAQ 660
Query: 662 LRDEAARLEKKL 673
+RDE L K+
Sbjct: 661 VRDEIDNLRKQF 672
>gi|146307759|ref|YP_001188224.1| excinuclease ABC, B subunit [Pseudomonas mendocina ymp]
gi|145575960|gb|ABP85492.1| excinuclease ABC, B subunit [Pseudomonas mendocina ymp]
Length = 671
Score = 710 bits (1832), Expect = 0.0, Method: Composition-based stats.
Identities = 372/675 (55%), Positives = 493/675 (73%), Gaps = 6/675 (0%)
Query: 2 DYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVL 61
+++L +RFKP GDQPEAIRQ+++G+ G+ QTLLGVTGSGKTF+VANV+A V RPTLVL
Sbjct: 3 EFQLVTRFKPAGDQPEAIRQMIEGLEAGLSHQTLLGVTGSGKTFSVANVIAQVQRPTLVL 62
Query: 62 SHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLR 121
+ NKTLAAQLYGEFKAFFP NAVEYFVSYYDYYQPEAY+P +DT+IEKD +IN IE++R
Sbjct: 63 APNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMR 122
Query: 122 LRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYT 181
L AT +L+ RKDV+VV +VS +YG+ +PE + + V+ L G + D+ +R L E YT
Sbjct: 123 LSATKALIE-RKDVIVVCTVSSIYGLGSPEEYLKMVLHLDRGDKMDQRALLRRLAELQYT 181
Query: 182 NNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSE 241
N ++F FRV+GD +DIFPA D A RVE +D EVE +S FDP TG L
Sbjct: 182 RNDMDFARATFRVRGDVIDIFPAES--DLEAIRVELFDDEVESISAFDPLTGEVIQKLPR 239
Query: 242 LKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIREL 301
YP + +VT +E + AV +I V+L ++++L+ K EA+RL +R +DLEMI EL
Sbjct: 240 FTFYPKSHYVTPRETLLEAVEQIKVELQQRLEYLRGANKLVEAQRLEQRTRFDLEMILEL 299
Query: 302 GYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKEN 361
GYC+GIENYSRY GR AG P L DY P+D LLVIDESHV++PQ+ AMY GDRSRKE
Sbjct: 300 GYCNGIENYSRYLSGRPAGAPPPTLYDYLPDDALLVIDESHVSVPQVGAMYKGDRSRKET 359
Query: 362 LVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLD 421
LVEYGFRLP+ALDNRP+RF+E+EA +P+T+++SATP YE + G ++EQ++RPTGL+D
Sbjct: 360 LVEYGFRLPSALDNRPMRFEEWEAASPQTIFVSATPGPYEAEHA-GRVIEQVVRPTGLVD 418
Query: 422 PIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDV 481
P ++V+P QVDDL+ EI + +RVLVTTLTKRMAE+L++YL H + Y+HSD+
Sbjct: 419 PAVEVRPARTQVDDLLSEIRLRVAAGDRVLVTTLTKRMAEDLTDYLGDHDVKVRYLHSDI 478
Query: 482 DTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 541
DT+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT G
Sbjct: 479 DTVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 538
Query: 542 RAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEG 601
RAAR+++GR I YAD +T SMQ + ET RRRAKQ+A+NEA+GI P+ + K+ I
Sbjct: 539 RAARNLNGRAILYADNMTGSMQRAIGETERRRAKQIAFNEANGIVPKGVQKDVKDILEGA 598
Query: 602 DVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAAR 661
V +S+ G + +++ +A ++ S ++ I +++M A A++L+F AA+
Sbjct: 599 VVPGARSNKRKG--MAKAAEESARYESELRSPSEITKRIRQLEEKMYALARDLEFEAAAQ 656
Query: 662 LRDEAARLEKKLEQL 676
LRDE +L +L Q+
Sbjct: 657 LRDEIQKLRDRLLQV 671
>gi|148548992|ref|YP_001269094.1| excinuclease ABC, B subunit [Pseudomonas putida F1]
gi|148513050|gb|ABQ79910.1| excinuclease ABC, B subunit [Pseudomonas putida F1]
Length = 671
Score = 710 bits (1832), Expect = 0.0, Method: Composition-based stats.
Identities = 367/672 (54%), Positives = 492/672 (73%), Gaps = 6/672 (0%)
Query: 2 DYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVL 61
+++L +RF+P GDQPEAIRQLV+GI G+ QTLLGVTGSGKTF++ANV+ V RPTLVL
Sbjct: 3 EFQLVTRFQPAGDQPEAIRQLVEGIEAGLSHQTLLGVTGSGKTFSIANVIQQVQRPTLVL 62
Query: 62 SHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLR 121
+ NKTLAAQLYGEFKAFFP NAVEYFVSYYDYYQPEAY+P +DT+IEKD +IN IE++R
Sbjct: 63 APNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMR 122
Query: 122 LRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYT 181
L AT +LL R+D ++V++VSC+YG+ +PE + + V+ + G + D+ +R L + YT
Sbjct: 123 LSATKALLE-RRDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQYT 181
Query: 182 NNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSE 241
N+++F FRV+GD +DIFPA D A R+E +D EVE ++ FDP TG + L
Sbjct: 182 RNEMDFARATFRVRGDVIDIFPAES--DLEAIRIELFDDEVENIAAFDPLTGEVFRKLPR 239
Query: 242 LKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIREL 301
YP + +VT +E + AV I +L ++++L + K EA+RL +R +DLEMI EL
Sbjct: 240 FTFYPKSHYVTPRETLLEAVEGIKEELKERLEYLHKANKLVEAQRLEQRTRFDLEMILEL 299
Query: 302 GYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKEN 361
GYC+GIENYSRY GR AG P L DY P D LLVIDESHV++PQ+ AMY GDRSRKE
Sbjct: 300 GYCNGIENYSRYLSGRPAGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKET 359
Query: 362 LVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLD 421
LVEYGFR+P+ALDNRP+RFDE+E ++P+T+++SATP YE + G +VEQ++RPTGL+D
Sbjct: 360 LVEYGFRMPSALDNRPMRFDEWEDVSPQTIFVSATPGPYEAEHA-GRVVEQVVRPTGLVD 418
Query: 422 PIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDV 481
P ++V+P QVDDL+ EI + + ERVL TTLTKRMAE+LS+YL H + Y+HSD+
Sbjct: 419 PQVEVRPALTQVDDLLSEIRKRVAAGERVLATTLTKRMAEDLSDYLADHDVRVRYLHSDI 478
Query: 482 DTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 541
DT+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT G
Sbjct: 479 DTVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 538
Query: 542 RAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEG 601
RAAR+++GR I YAD +T SMQ +DET RRR KQ+A+NEA+GI P+ +VK+ I
Sbjct: 539 RAARNLNGRAILYADNVTGSMQRAIDETERRREKQIAFNEANGIVPKGVVKDITDIMEGA 598
Query: 602 DVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAAR 661
V +S G + +++ +A A+ + ++ I +++M+ A++L+F AA+
Sbjct: 599 AVPGARSKKRKG--MAKAAEESARYEAELRTPGEITKRIKQLEEKMMQFARDLEFEAAAQ 656
Query: 662 LRDEAARLEKKL 673
LRDE A+L ++L
Sbjct: 657 LRDEIAQLRERL 668
>gi|15602294|ref|NP_245366.1| excinuclease ABC subunit B [Pasteurella multocida subsp. multocida
str. Pm70]
gi|13431963|sp|P57844|UVRB_PASMU UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
gi|12720682|gb|AAK02513.1| UvrB [Pasteurella multocida subsp. multocida str. Pm70]
Length = 678
Score = 710 bits (1832), Expect = 0.0, Method: Composition-based stats.
Identities = 368/672 (54%), Positives = 483/672 (71%), Gaps = 12/672 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
+ L S F P+GDQP+AI QL++G+ G+ QTLLGVTGSGKTFT+ANV+A +NRP +VL+
Sbjct: 10 FILHSDFSPSGDQPQAITQLIEGLENGLAHQTLLGVTGSGKTFTIANVIAKLNRPAMVLA 69
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLY E KAFFPENAVEYFVSYYDYYQPEAY+P +DT+IEKD +IN +IE++RL
Sbjct: 70 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT S L R+D +VV+SVS +YG+ +P+++ + ++ L TG ++ + L E YT
Sbjct: 130 SATKSFLE-RRDTIVVASVSAIYGLGDPDSYLKMMLHLQTGAIINQRQILAQLAELQYTR 188
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N FE G FRV+G+ +DIFPA D A R+E +D E+ERLS FDP TG +G +
Sbjct: 189 NDQAFERGTFRVRGEIIDIFPAES--DDKAIRIELFDDEIERLSLFDPLTGSSFGPVPRY 246
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
IYP +VT +E++ A+ KI +L + FL E K E +R+ +R +D+EM+ ELG
Sbjct: 247 TIYPKTHYVTPRERILNAIEKIKQELAERRQFLLENNKLLEEQRITQRTQFDIEMMNELG 306
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSGIENYSRY GR+ GE P L DY P D LL+IDESHVT+PQI MY GDRSRKE L
Sbjct: 307 YCSGIENYSRYLSGRNEGEPPPTLFDYMPSDALLIIDESHVTVPQIGGMYRGDRSRKETL 366
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFRLP+ALDNRPLRF+EFE L P+T+Y+SATP YEL +S G I++Q++RPTGLLDP
Sbjct: 367 VEYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGGEIIDQVVRPTGLLDP 426
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
I+++P A QVDDL+ E + ++ ERVLVTTLTK+MAE+L++YL HGI Y+HSD+D
Sbjct: 427 EIEIRPVAIQVDDLLSEARQRADQNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDID 486
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT GR
Sbjct: 487 TVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGR 546
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR++ G+ I YAD+IT+SMQ + ET RRR KQ+ YNEA GI PQ + K G+
Sbjct: 547 AARNLKGKAILYADRITNSMQKAITETNRRREKQMKYNEARGIVPQALNKKV------GE 600
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYL---SKPKLEALIASTKKQMLAAAKELDFLEA 659
+ + A ++ A+P A Y+ + + + I ++QM A++L+F +A
Sbjct: 601 LLDIGQGANQKAKANRNAKKVAEPTALYVVPQTAKEYQQQIKKLEQQMYKYAQDLEFEKA 660
Query: 660 ARLRDEAARLEK 671
A +RD+ +L +
Sbjct: 661 AAVRDQLQQLRE 672
>gi|149181818|ref|ZP_01860308.1| excinuclease ABC subunit B [Bacillus sp. SG-1]
gi|148850457|gb|EDL64617.1| excinuclease ABC subunit B [Bacillus sp. SG-1]
Length = 660
Score = 710 bits (1832), Expect = 0.0, Method: Composition-based stats.
Identities = 368/670 (54%), Positives = 484/670 (72%), Gaps = 15/670 (2%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
++L S+++P GDQP AI+++ QGI +G QTLLG TG+GKTFTV+NV+ VN+PTLV++
Sbjct: 5 FQLHSKYQPRGDQPAAIKEITQGIRDGKRHQTLLGATGTGKTFTVSNVIKEVNKPTLVIA 64
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
HNKTLA QLY EFK FFP+NAVEYFVSYYDYYQPEAY+P TDT+IEKD +IN EI+KLR
Sbjct: 65 HNKTLAGQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT+SL RKDV++++SVSC+YG+ +PE + + V+SL G +R+ +R LV+ Y
Sbjct: 125 SATSSLFE-RKDVIIIASVSCIYGLGSPEEYRDLVVSLRVGMEIERNQLLRKLVDVQYAR 183
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N ++F+ G FRV+GD V+IFPA D R+EF+ E++R+ D TG G +
Sbjct: 184 NDIDFKRGTFRVRGDVVEIFPASR--DEHCMRIEFFGDEIDRIREVDSLTGEIIGERDHV 241
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
I+PA+ FVT +E++ A+G I+ +L Q+ ++E K EA+RL +R YDLEM+RE+G
Sbjct: 242 AIFPASHFVTREEKMRVAIGNIEQELEEQLKVMREENKLLEAQRLEQRTRYDLEMMREMG 301
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
+CSGIENYSR+ R +G P+ LLDYFPEDFL+VIDESHVT+PQIR M+ GD++RK+ L
Sbjct: 302 FCSGIENYSRHLTLRPSGSTPYTLLDYFPEDFLIVIDESHVTLPQIRGMFNGDQARKKVL 361
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
V++GFRLP+A+DNRPL+F+EFE + +Y+SATP YE S +I +Q+IRPTGLLDP
Sbjct: 362 VDHGFRLPSAMDNRPLKFEEFEQKANQLVYVSATPGPYEGEHSPEMI-QQIIRPTGLLDP 420
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
ID++P Q+DDL+ EI +EK ERVLVTTLTK+M+E+LS YL GI Y+HS++
Sbjct: 421 TIDIRPIEGQIDDLIGEINERVEKNERVLVTTLTKKMSEDLSAYLKEIGIKVQYLHSEIK 480
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
TLER+ I+ DLR G YD LIG+NLLREGLD+PEVSLV ILDADKEGFLRS RSL QT GR
Sbjct: 481 TLERIEIIRDLRMGKYDVLIGINLLREGLDIPEVSLVTILDADKEGFLRSERSLIQTIGR 540
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR+ +G VI YADK+TDSMQ +DET+RRR Q+ YNE HGITPQ I KN +
Sbjct: 541 AARNANGHVIMYADKLTDSMQKALDETSRRREIQIEYNEKHGITPQTIQKNIPNLIRATH 600
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARL 662
+ Q++ E A L+KP+ E LIAS + +M AA+ LDF AA+L
Sbjct: 601 AAEDQTEYE-----------GAQKKVTKLTKPEREKLIASLEGEMKEAARALDFERAAQL 649
Query: 663 RDEAARLEKK 672
RD L+ +
Sbjct: 650 RDTILELKAE 659
>gi|15598334|ref|NP_251828.1| excinuclease ABC subunit B [Pseudomonas aeruginosa PAO1]
gi|107102687|ref|ZP_01366605.1| hypothetical protein PaerPA_01003752 [Pseudomonas aeruginosa PACS2]
gi|12644339|sp|P72174|UVRB_PSEAE UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
gi|9949251|gb|AAG06526.1|AE004737_12 excinuclease ABC subunit B [Pseudomonas aeruginosa PAO1]
Length = 670
Score = 710 bits (1832), Expect = 0.0, Method: Composition-based stats.
Identities = 372/671 (55%), Positives = 484/671 (72%), Gaps = 7/671 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
++L SRFKP GDQPEAIRQ+V+G+ G+ QTLLGVTGSGKTF++ANV+A V RPTLVL+
Sbjct: 4 FQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLA 63
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLYGEFK FFP N+VEYFVSYYDYYQPEAY+P +DTYIEKD +IN IE++RL
Sbjct: 64 PNKTLAAQLYGEFKTFFPHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQMRL 123
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL R D ++V++VS +YG+ +P ++ + V+ L G R D+ +R L YT
Sbjct: 124 SATKALLE-RPDAIIVATVSSIYGLGDPASYLKMVLHLDRGDRIDQRELLRRLTSLQYTR 182
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N ++F FRV+GD +DIFPA D A RVE +D EVE LS FDP TG L
Sbjct: 183 NDMDFARATFRVRGDVIDIFPAES--DLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRF 240
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
YP + +VT +E + AV +I +L ++D+L+ K EA+RL +R +DLEMI ELG
Sbjct: 241 TFYPKSHYVTPRETLLEAVDQIKAELKERLDYLRNNNKLVEAQRLEQRTRFDLEMILELG 300
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YC+GIENYSRY GR GE P L DY P + LLVIDESHV++PQ+ AM+ GDRSRKE L
Sbjct: 301 YCNGIENYSRYLSGRAPGEPPPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETL 360
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFRLP+ALDNRPLRF+E+EA++P+T+++SATP YE + G ++EQ++RPTGL+DP
Sbjct: 361 VEYGFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEAEHA-GRVIEQVVRPTGLVDP 419
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
I+V+P QVDDL+ +I + + K ERVLVTTLTKRMAE+L++YL H + Y+HSD+D
Sbjct: 420 EIEVRPAMTQVDDLLSQIRQRVAKDERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDID 479
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT GR
Sbjct: 480 TVERVEIIRDLRAGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 539
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR++HG+ I YAD +T SMQ +DET RRRAKQ+A+NEAHGI P+ + K+ I
Sbjct: 540 AARNLHGKAILYADNVTGSMQRAIDETERRRAKQIAFNEAHGIVPKGVRKDIKDILEGAV 599
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARL 662
V + + A + E S + L S ++ I +++M A++L+F AA+L
Sbjct: 600 VPGARGKRKGVAKVAEESGRYENELR---SPSEISKRIRQLEEKMYQLARDLEFEAAAQL 656
Query: 663 RDEAARLEKKL 673
RDE L ++L
Sbjct: 657 RDEIQTLRERL 667
>gi|152985171|ref|YP_001347370.1| excinuclease ABC, B subunit [Pseudomonas aeruginosa PA7]
gi|150960329|gb|ABR82354.1| excinuclease ABC, B subunit [Pseudomonas aeruginosa PA7]
Length = 670
Score = 709 bits (1831), Expect = 0.0, Method: Composition-based stats.
Identities = 372/671 (55%), Positives = 484/671 (72%), Gaps = 7/671 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
++L SRFKP GDQPEAIRQ+V+G+ G+ QTLLGVTGSGKTF++ANV+A V RPTLVL+
Sbjct: 4 FQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLA 63
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLYGEFK FFP N+VEYFVSYYDYYQPEAY+P +DTYIEKD +IN IE++RL
Sbjct: 64 PNKTLAAQLYGEFKTFFPHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQMRL 123
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL R D ++V++VS +YG+ +P ++ + V+ L G R D+ +R L YT
Sbjct: 124 SATKALLE-RPDAIIVATVSSIYGLGDPASYLKMVLHLDRGDRIDQRELLRRLTSLQYTR 182
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N ++F FRV+GD +DIFPA D A RVE +D EVE LS FDP TG L
Sbjct: 183 NDMDFARATFRVRGDVIDIFPAES--DLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRF 240
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
YP + +VT +E + AV +I +L ++D+L+ K EA+RL +R +DLEMI ELG
Sbjct: 241 TFYPKSHYVTPRETLLEAVDQIKAELKERLDYLRNNNKLVEAQRLEQRTRFDLEMILELG 300
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YC+GIENYSRY GR GE P L DY P + LLVIDESHV++PQ+ AM+ GDRSRKE L
Sbjct: 301 YCNGIENYSRYLSGRAPGEPPPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETL 360
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFRLP+ALDNRPLRF+E+EA++P+T+++SATP YE + G ++EQ++RPTGL+DP
Sbjct: 361 VEYGFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEAEHA-GRVIEQVVRPTGLVDP 419
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
I+V+P QVDDL+ +I + + K ERVLVTTLTKRMAE+L++YL H + Y+HSD+D
Sbjct: 420 EIEVRPAMTQVDDLLSQIRQRVAKDERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDID 479
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT GR
Sbjct: 480 TVERVEIIRDLRSGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 539
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR++HG+ I YAD +T SMQ +DET RRRAKQ+A+NEAHGI P+ + K+ I
Sbjct: 540 AARNLHGKAILYADNVTGSMQRAIDETERRRAKQIAFNEAHGIVPKGVRKDIKDILEGAV 599
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARL 662
V + + A + E S + L S ++ I +++M A++L+F AA+L
Sbjct: 600 VPGARGKRKGVAKVAEESGRYDNELR---SPSEISKRIRQLEEKMYQLARDLEFEAAAQL 656
Query: 663 RDEAARLEKKL 673
RDE L ++L
Sbjct: 657 RDEIQTLRERL 667
>gi|66045214|ref|YP_235055.1| excinuclease ABC subunit B [Pseudomonas syringae pv. syringae
B728a]
gi|75502487|sp|Q4ZV05|UVRB_PSEU2 UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
gi|63255921|gb|AAY37017.1| Excinuclease ABC, B subunit [Pseudomonas syringae pv. syringae
B728a]
Length = 671
Score = 709 bits (1831), Expect = 0.0, Method: Composition-based stats.
Identities = 367/672 (54%), Positives = 491/672 (73%), Gaps = 6/672 (0%)
Query: 2 DYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVL 61
+++L +RF+P GDQPEAIRQLV+GI+ G+ QTLLGVTGSGKTF++ANV++ + RPTLVL
Sbjct: 3 EFQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQIKRPTLVL 62
Query: 62 SHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLR 121
+ NKTLAAQLYGEFKAFFP NAVEYFVSYYDYYQPEAY+P +DT+IEKD +IN IE++R
Sbjct: 63 APNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMR 122
Query: 122 LRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYT 181
L AT +LL RKD ++V++VSC+YG+ +PE + V+ + G + D+ +R L + YT
Sbjct: 123 LSATKALLE-RKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQYT 181
Query: 182 NNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSE 241
N ++F FRV+GD +DI+PA D A RVE +D EVE LS FDP TG L
Sbjct: 182 RNDMDFARATFRVRGDVIDIYPAES--DLEAIRVELFDDEVESLSAFDPLTGEVIRKLPR 239
Query: 242 LKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIREL 301
YP + +VT +E + A+ I V+L ++++L+ K EA+RL +R +DLEM+ EL
Sbjct: 240 FTFYPKSHYVTPRETLIEAMENIKVELQERLEYLRSQNKLVEAQRLEQRTRFDLEMMLEL 299
Query: 302 GYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKEN 361
GYC+GIENYSRY GR +G P L DY P D LLVIDESHV++PQ+ AMY GDRSRKE
Sbjct: 300 GYCNGIENYSRYLSGRPSGAPPPTLFDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKET 359
Query: 362 LVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLD 421
LVEYGFRLP+ALDNRP+RFDE+EA++P+T+++SATP +YE + G IVEQ++RPTGL+D
Sbjct: 360 LVEYGFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRIVEQVVRPTGLVD 418
Query: 422 PIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDV 481
P I+++P QVDDL+ EI + +ERVLVTTLTKRM+E+L++YL HG+ Y+HSD+
Sbjct: 419 PQIEIRPALTQVDDLLSEIHKRAALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDI 478
Query: 482 DTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 541
DT+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT G
Sbjct: 479 DTVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIG 538
Query: 542 RAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEG 601
RAAR+++GR I YAD+IT SM+ + ET RRR KQ+A+N HGITP+ + K+ A I
Sbjct: 539 RAARNLNGRAILYADRITGSMERAIGETERRREKQIAFNLEHGITPKGVFKDVADIMEGA 598
Query: 602 DVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAAR 661
V +S G + +++ A + S ++ I +++M A++L+F AA+
Sbjct: 599 TVPGSRSKKRKG--MAKAAEENARYENELRSPSEINKRIRQLEEKMYQLARDLEFEAAAQ 656
Query: 662 LRDEAARLEKKL 673
+RDE +L ++L
Sbjct: 657 MRDEIGKLRERL 668
>gi|77458102|ref|YP_347607.1| excinuclease ABC subunit B [Pseudomonas fluorescens PfO-1]
gi|90111048|sp|Q3KF38|UVRB_PSEPF UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
gi|77382105|gb|ABA73618.1| Excinuclease ABC, B subunit [Pseudomonas fluorescens PfO-1]
Length = 671
Score = 709 bits (1830), Expect = 0.0, Method: Composition-based stats.
Identities = 366/672 (54%), Positives = 492/672 (73%), Gaps = 6/672 (0%)
Query: 2 DYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVL 61
+++L +RF P GDQPEAIR +V+GI G+ QTLLGVTGSGKTF++ANV+A V RPTLVL
Sbjct: 3 EFQLVTRFDPAGDQPEAIRLMVEGIEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVL 62
Query: 62 SHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLR 121
+ NKTLAAQLYGEFK+FFP NAVEYFVSYYDYYQPEAY+P +DT+IEKD +IN IE++R
Sbjct: 63 APNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMR 122
Query: 122 LRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYT 181
L AT +LL RKD ++V++VSC+YG+ +PE + + V+ + G + D+ +R L + YT
Sbjct: 123 LSATKALLE-RKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALVRRLADLQYT 181
Query: 182 NNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSE 241
N ++F FRV+GD +DI+PA D A R+E +D EVE +S FDP TG L
Sbjct: 182 RNDMDFARATFRVRGDVIDIYPAES--DLEAIRIELFDDEVESISAFDPLTGEVIRKLPR 239
Query: 242 LKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIREL 301
YP + +VT +E + A+ I V+L ++++L+ K EA+RL +R +DLEMI EL
Sbjct: 240 FTFYPKSHYVTPRETLLDAIEGIKVELQERLEYLRNNNKLVEAQRLEQRTRFDLEMILEL 299
Query: 302 GYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKEN 361
GYC+GIENYSRY GR AG P L DY P D LLVIDESHV++PQ+ AMY GDRSRKE
Sbjct: 300 GYCNGIENYSRYLSGRPAGAAPPTLYDYLPADALLVIDESHVSVPQVGAMYKGDRSRKET 359
Query: 362 LVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLD 421
LVEYGFRLP+ALDNRP+RFDE+E ++P+T+++SATP +YE + G ++EQ++RPTGL+D
Sbjct: 360 LVEYGFRLPSALDNRPMRFDEWEGVSPQTIFVSATPGNYEAEHA-GRVIEQVVRPTGLVD 418
Query: 422 PIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDV 481
P ++V+P QVDDL+ EI + + +ERVLVTTLTKRMAE+L++YL HG+ Y+HSD+
Sbjct: 419 PQVEVRPALTQVDDLLSEITKRVAVEERVLVTTLTKRMAEDLTDYLADHGVRVRYLHSDI 478
Query: 482 DTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 541
DT+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT G
Sbjct: 479 DTVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 538
Query: 542 RAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEG 601
RAAR+++GR I YAD+IT SM+ + ET RRR KQ+A+N A+GITP+ + K+ A I
Sbjct: 539 RAARNLNGRAILYADRITGSMERAIGETERRRDKQIAFNLANGITPKGVFKDVADIMEGA 598
Query: 602 DVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAAR 661
V +S G + +++ A A+ S ++ I +++M A++L+F AA+
Sbjct: 599 TVPGSRSKKRKG--MAKAAEENAKYEAELRSPSEITKRIRQLEEKMYQLARDLEFEAAAQ 656
Query: 662 LRDEAARLEKKL 673
+RDE A+L ++L
Sbjct: 657 MRDEIAKLRERL 668
>gi|77960824|ref|ZP_00824679.1| COG0556: Helicase subunit of the DNA excision repair complex
[Yersinia mollaretii ATCC 43969]
Length = 670
Score = 709 bits (1830), Expect = 0.0, Method: Composition-based stats.
Identities = 380/673 (56%), Positives = 483/673 (71%), Gaps = 13/673 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
+KL S FKP GDQP+AIR+L +G+ G+ QTLLGVTGSGKTFTVANV+A +NRPT+VL+
Sbjct: 5 FKLHSEFKPAGDQPDAIRKLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 64
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLYGE K FFP+NAVEYFVSYYDYYQPEAY+P +DT+IEKD ++N IE++RL
Sbjct: 65 PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL R+DV+VV+SVS +YG+ +P+ + + ++ L G D+ +R L E Y+
Sbjct: 125 SATKALLE-RRDVIVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLSELQYSR 183
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N F+ G FRV+G+ +DIFPA D A RVE +D EVERLS FDP TG+ +
Sbjct: 184 NDQVFQRGTFRVRGEVIDIFPAES--DEWALRVELFDDEVERLSIFDPLTGQLQHEVPRF 241
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
+YP +VT +E++ +A+ +I V+L + L E K E +R+ +R +DLEM+ ELG
Sbjct: 242 TVYPKTHYVTPRERILQAMEEIKVELADRRKVLLENNKLLEEQRIAQRTQFDLEMMNELG 301
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSGIENYSRY GR GE P L DY P D LL++DESHVTIPQI MY GDRSRKE L
Sbjct: 302 YCSGIENYSRYLSGRGPGEPPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKETL 361
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFRLP+ALDNRP+RF+EFEA P+T+Y+SATP YEL +S G I+EQ++RPTGLLDP
Sbjct: 362 VEYGFRLPSALDNRPMRFEEFEASAPQTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDP 421
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
+I+V+P A QVDDL+ EI ERVLVTTLTKRMAE+L+EYL+ HG Y+HSD+D
Sbjct: 422 LIEVRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTEYLVEHGARVRYLHSDID 481
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT GR
Sbjct: 482 TVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR+++G+ I Y D+IT SM+ + ET RRRAKQ AYNE GITPQ + K GD
Sbjct: 542 AARNLNGKAILYGDRITASMEKAIGETERRRAKQQAYNEERGITPQGLNKKI------GD 595
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKP--KLEALIASTKKQMLAAAKELDFLEAA 660
+ L + G V ADP +YLS P L+ I + +M A+ L+F +AA
Sbjct: 596 LLQLGQPSTRGKGKGRGGKV-ADP-DNYLSLPPKALDQKIRELEAKMYTYAQNLEFEQAA 653
Query: 661 RLRDEAARLEKKL 673
LRD+ +L ++
Sbjct: 654 ELRDQVHQLRQQF 666
>gi|126356822|ref|ZP_01713826.1| excinuclease ABC, B subunit [Pseudomonas putida GB-1]
gi|126318631|gb|EAZ69485.1| excinuclease ABC, B subunit [Pseudomonas putida GB-1]
Length = 671
Score = 709 bits (1830), Expect = 0.0, Method: Composition-based stats.
Identities = 365/672 (54%), Positives = 492/672 (73%), Gaps = 6/672 (0%)
Query: 2 DYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVL 61
+++L +RF+P GDQPEAIRQLV+GI G+ QTLLGVTGSGKTF++ANV+ V RPTLVL
Sbjct: 3 EFQLVTRFQPAGDQPEAIRQLVEGIEAGLSHQTLLGVTGSGKTFSIANVIQHVQRPTLVL 62
Query: 62 SHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLR 121
+ NKTLAAQLYGEFKAFFP NAVEYFVSYYDYYQPEAY+P +DT+IEKD +IN IE++R
Sbjct: 63 APNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMR 122
Query: 122 LRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYT 181
L AT +LL R+D ++V++VSC+YG+ +PE + + V+ + G + D+ +R L + YT
Sbjct: 123 LSATKALLE-RRDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQYT 181
Query: 182 NNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSE 241
N+++F FRV+GD +DIFPA D A R+E +D EVE ++ FDP TG + L
Sbjct: 182 RNEMDFARATFRVRGDVIDIFPAES--DLEAIRIELFDDEVENIAAFDPLTGEVFRKLPR 239
Query: 242 LKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIREL 301
YP + +VT +E + AV I +L ++++L + K EA+RL +R +DLEMI EL
Sbjct: 240 FTFYPKSHYVTPRETLLEAVEGIKEELKERLEYLHKANKLVEAQRLEQRTRFDLEMILEL 299
Query: 302 GYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKEN 361
GYC+GIENYSRY GR AG P L DY P D LLVIDESHV++PQ+ AMY GDRSRKE
Sbjct: 300 GYCNGIENYSRYLSGRPAGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKET 359
Query: 362 LVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLD 421
LVEYGFR+P+ALDNRP+RFDE+E ++P+T+++SATP YE + G +VEQ++RPTGL+D
Sbjct: 360 LVEYGFRMPSALDNRPMRFDEWEDVSPQTIFVSATPGPYEAEHA-GRVVEQVVRPTGLVD 418
Query: 422 PIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDV 481
P ++++P QVDDL+ EI + + ERVL TTLTKRMAE+LS+YL H + Y+HSD+
Sbjct: 419 PQVEIRPALTQVDDLLSEIRKRVAAGERVLATTLTKRMAEDLSDYLADHDVRVRYLHSDI 478
Query: 482 DTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 541
DT+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT G
Sbjct: 479 DTVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 538
Query: 542 RAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEG 601
RAAR+++GR I YAD +T SMQ +DET RRR KQ+A+NEA+GI P+ +VK+ I
Sbjct: 539 RAARNLNGRAILYADNVTGSMQRAIDETERRREKQIAFNEANGIVPKGVVKDITDILEGA 598
Query: 602 DVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAAR 661
V +S G + +++ +A A+ + ++ I +++M+ A++L+F AA+
Sbjct: 599 TVPGARSKKRKG--MAKAAEESARYEAELRTPGEITKRIKQLEEKMMQFARDLEFEAAAQ 656
Query: 662 LRDEAARLEKKL 673
LRDE ++L ++L
Sbjct: 657 LRDEISQLRERL 668
>gi|28869367|ref|NP_791986.1| excinuclease ABC subunit B [Pseudomonas syringae pv. tomato str.
DC3000]
gi|81840219|sp|Q884C9|UVRB_PSESM UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
gi|28852608|gb|AAO55681.1| excinuclease ABC, B subunit [Pseudomonas syringae pv. tomato str.
DC3000]
Length = 671
Score = 709 bits (1829), Expect = 0.0, Method: Composition-based stats.
Identities = 366/672 (54%), Positives = 492/672 (73%), Gaps = 6/672 (0%)
Query: 2 DYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVL 61
+++L +RF+P GDQPEAIRQLV+GI+ G+ QTLLGVTGSGKTF++ANV++ + RPTLVL
Sbjct: 3 EFQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQIKRPTLVL 62
Query: 62 SHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLR 121
+ NKTLAAQLYGEFKAFFP NAVEYFVSYYDYYQPEAY+P +DT+IEKD +IN IE++R
Sbjct: 63 APNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMR 122
Query: 122 LRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYT 181
L AT +LL RKD ++V++VSC+YG+ +PE + V+ + G + D+ +R L + YT
Sbjct: 123 LSATKALLE-RKDAIIVTTVSCIYGLGSPETYLRMVLHVDRGDKLDQRALLRRLADLQYT 181
Query: 182 NNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSE 241
N ++F FRV+GD +DI+PA D A R+E +D EVE LS FDP TG L
Sbjct: 182 RNDMDFARATFRVRGDVIDIYPAES--DLEAIRIELFDDEVESLSAFDPLTGEVIRKLPR 239
Query: 242 LKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIREL 301
YP + +VT +E + A+ I V+L ++++L+ K EA+RL +R +DLEM+ EL
Sbjct: 240 FTFYPKSHYVTPRETLVEAMEGIKVELQERLEYLRSQNKLVEAQRLEQRTRFDLEMMLEL 299
Query: 302 GYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKEN 361
GYC+GIENYSRY GR +G P L DY P D LLVIDESHV++PQ+ AMY GDRSRKE
Sbjct: 300 GYCNGIENYSRYLSGRPSGAPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKET 359
Query: 362 LVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLD 421
LVEYGFRLP+ALDNRP+RFDE+EA++P+T+++SATP +YE + G IVEQ++RPTGL+D
Sbjct: 360 LVEYGFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRIVEQVVRPTGLVD 418
Query: 422 PIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDV 481
P I+++P QVDDL+ EI + +ERVLVTTLTKRM+E+L++YL HG+ Y+HSD+
Sbjct: 419 PQIEIRPALTQVDDLLSEIHKRAALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDI 478
Query: 482 DTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 541
DT+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT G
Sbjct: 479 DTVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIG 538
Query: 542 RAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEG 601
RAAR+++GR I YAD+IT SM+ + ET RRR KQ+A+N HGITP+ + K+ A I
Sbjct: 539 RAARNLNGRAILYADRITGSMERAIGETERRREKQIAFNLEHGITPKGVFKDVADIMEGA 598
Query: 602 DVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAAR 661
V +S G + +++ +A + S ++ I +++M A++L+F AA+
Sbjct: 599 TVPGSRSKKRKG--MAKAAEESARYENELRSPSEINKRIRQLEEKMYQLARDLEFEAAAQ 656
Query: 662 LRDEAARLEKKL 673
+RDE +L ++L
Sbjct: 657 MRDEIGKLRERL 668
>gi|113461753|ref|YP_719822.1| excinuclease ABC, subunit B [Haemophilus somnus 129PT]
gi|112823796|gb|ABI25885.1| excinuclease ABC, subunit B [Haemophilus somnus 129PT]
Length = 677
Score = 709 bits (1829), Expect = 0.0, Method: Composition-based stats.
Identities = 366/673 (54%), Positives = 486/673 (72%), Gaps = 8/673 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
+ L S F+P+GDQP+AI LV+ +N+G+ QTLLGVTGSGKTFT+ANV+A +NRP +VL+
Sbjct: 9 FILHSDFQPSGDQPQAIANLVENLNDGLAHQTLLGVTGSGKTFTIANVIAKLNRPAMVLA 68
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLY E KAFFPENAVEYFVSYYDYYQPEAY+P +DT+IEKD +IN +IE++RL
Sbjct: 69 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 128
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT S L R+D +VV+SVS +YG+ +P+++ + ++ L G D+ + L E YT
Sbjct: 129 SATKSFLE-RRDTIVVASVSAIYGLGDPDSYLKMMLHLQHGAIVDQRQILAKLAELQYTR 187
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N F+ G FRV+G+ +DIFPA D A R+E +D E+ERLS FDP TG +G +
Sbjct: 188 NDQVFQRGTFRVRGEIIDIFPAES--DDRAVRIELFDDEIERLSLFDPLTGANFGAIPRY 245
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
IYP +VT +E++ A+ KI ++L A+ ++L + E +RL +R +D+EM+ ELG
Sbjct: 246 TIYPKTHYVTPRERILEAIEKIKLELQARREYLLANNRLVEEQRLTQRTQFDIEMMNELG 305
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSGIENYSRY GRD GE P L DY P D LL+IDESHVT+PQI MY GDRSRKE L
Sbjct: 306 YCSGIENYSRYLSGRDEGEPPPTLFDYIPSDGLLIIDESHVTVPQIGGMYRGDRSRKETL 365
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFRLP+ALDNRPLRF+EFE L P+T+Y+SATP YEL +S I++Q++RPTGLLDP
Sbjct: 366 VEYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGDEIIDQVVRPTGLLDP 425
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
++++P A QVDDL+ E + E+ ERVLVTTLTKRMAE+L++YL HGI Y+HSD+D
Sbjct: 426 EVEIRPVAIQVDDLLSEARKRAEQNERVLVTTLTKRMAEDLTDYLEEHGIRVRYLHSDID 485
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT GR
Sbjct: 486 TVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGR 545
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR+++G+ I YAD IT SMQ +DET RRR KQ+ YN GI PQ + K + G
Sbjct: 546 AARNLNGKAILYADSITKSMQKAIDETHRRREKQMKYNAEKGIVPQALNKKVGELLDIGQ 605
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPK-LEALIASTKKQMLAAAKELDFLEAAR 661
+ +S T++ A ++ + L ++ PK + + ++QM A++L+F +AA
Sbjct: 606 GAITKSKTKARA----KTVAESSALYQKINSPKDYQQQVKKLEQQMYKFAQDLEFEKAAA 661
Query: 662 LRDEAARLEKKLE 674
+RD+ L+++ +
Sbjct: 662 IRDQLQELKERFK 674
>gi|116492251|ref|YP_803986.1| Helicase subunit of the DNA excision repair complex [Pediococcus
pentosaceus ATCC 25745]
gi|116102401|gb|ABJ67544.1| Helicase subunit of the DNA excision repair complex [Pediococcus
pentosaceus ATCC 25745]
Length = 667
Score = 709 bits (1829), Expect = 0.0, Method: Composition-based stats.
Identities = 371/672 (55%), Positives = 490/672 (72%), Gaps = 14/672 (2%)
Query: 2 DYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVL 61
+++L S+++PTGDQP AI +LV GI G Q LLG TG+GKTFT++NV+ VN+PTL+L
Sbjct: 9 EFELVSKYQPTGDQPTAINELVDGIKSGEKEQILLGATGTGKTFTISNVIQKVNKPTLIL 68
Query: 62 SHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLR 121
SHNKTLA QLYGEFK FFP NAVEYFVSYYDYYQPEAY+P +DTYIEKD +IN EI++LR
Sbjct: 69 SHNKTLAGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDELR 128
Query: 122 LRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYT 181
AT+SLL R DV+VV+SVS ++G+ +P + ++ ++L GQ DR+ +R LV+ Y
Sbjct: 129 HSATSSLLE-RNDVIVVASVSSIFGLGDPREYQDQALTLRVGQEIDRNKLLRELVDIQYD 187
Query: 182 NNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSE 241
N ++F+ G FRV GD V+IFPA D + RVEF+ E++R+ D TG G
Sbjct: 188 RNDIDFQRGRFRVHGDVVEIFPAAN--DAHSIRVEFFGDEIDRMREMDALTGEIIGDRDH 245
Query: 242 LKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIREL 301
+ I+PA F+T +++++ A+ I+ +L +++ L GK EA+RL +R TYD+EM++E+
Sbjct: 246 ITIFPATHFMTNEDRMEHAIKNIEAELKDRLEELDGEGKLLEAQRLRQRTTYDIEMLKEM 305
Query: 302 GYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKEN 361
GY +GIENYSR+ DGR GE P+ LLD+FP+DFLLV+DESHVT+PQ+R MY GDR+RK+
Sbjct: 306 GYTNGIENYSRHMDGRKPGEAPYTLLDFFPDDFLLVVDESHVTMPQVRGMYNGDRARKQQ 365
Query: 362 LVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLD 421
LV+YGFRLP+ALDNRPL+ +EFE + +Y+SATP DYE R+ V V+Q+IRPTGLLD
Sbjct: 366 LVDYGFRLPSALDNRPLKLEEFEKHINQVVYMSATPGDYENERTNNV-VQQIIRPTGLLD 424
Query: 422 PIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDV 481
PII+V+P Q+DDL+ EI + IEK ERV VTTLTK+MAE+L++YL GI Y+HSD+
Sbjct: 425 PIIEVRPIMGQMDDLLGEINQRIEKDERVFVTTLTKKMAEDLTDYLKDMGIKVAYLHSDI 484
Query: 482 DTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 541
TLER RI+ DLR G YD L+G+NLLREG+D+PEVSLVAILDADKEGFLR+ RS+ Q AG
Sbjct: 485 KTLERTRIIRDLRVGKYDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNTRSMIQVAG 544
Query: 542 RAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEG 601
RAAR+ +G VI YAD +T SMQ T+DETARRR Q AYN HGITP I K+ ++
Sbjct: 545 RAARNENGHVIMYADHMTKSMQETIDETARRRTIQEAYNREHGITPHTIKKDIRSLISS- 603
Query: 602 DVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAAR 661
SDTE ++ + D AD SK + E +IA+ + QM AAAK+LDF +AA
Sbjct: 604 -----TSDTEDKG--KKDDFLDVD-FADMDSKDQKE-MIANLEDQMRAAAKKLDFEKAAN 654
Query: 662 LRDEAARLEKKL 673
LRD L+ ++
Sbjct: 655 LRDTVLELKAQI 666
>gi|84326065|ref|ZP_00974095.1| COG0556: Helicase subunit of the DNA excision repair complex
[Pseudomonas aeruginosa 2192]
gi|126195210|gb|EAZ59273.1| excinuclease ABC subunit B [Pseudomonas aeruginosa 2192]
Length = 670
Score = 709 bits (1829), Expect = 0.0, Method: Composition-based stats.
Identities = 371/671 (55%), Positives = 484/671 (72%), Gaps = 7/671 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
++L SRFKP GDQPEAIRQ+V+G+ G+ QTLLGVTGSGKTF++ANV+A V RPTLVL+
Sbjct: 4 FQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLA 63
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLYGEFK FFP N+VEYFVSYYDYYQPEAY+P +DTYIEKD +IN IE++RL
Sbjct: 64 PNKTLAAQLYGEFKTFFPHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQMRL 123
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL R D ++V++VS +YG+ +P ++ + V+ L G R D+ +R L YT
Sbjct: 124 SATKALLE-RPDAIIVATVSSIYGLGDPASYLKMVLHLDRGDRIDQRELLRRLTSLQYTR 182
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N ++F FRV+GD +DIFPA D A RVE +D EVE LS FDP TG L
Sbjct: 183 NDMDFARATFRVRGDVIDIFPAES--DLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRF 240
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
YP + +VT +E + AV +I +L ++D+L+ K EA+RL +R +DLEMI ELG
Sbjct: 241 TFYPKSHYVTPRETLLEAVDQIKAELKERLDYLRNNNKLVEAQRLEQRTRFDLEMILELG 300
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YC+GIENYSRY GR GE P L DY P + LLVIDESHV++PQ+ AM+ GDRSRKE L
Sbjct: 301 YCNGIENYSRYLSGRAPGEPPPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETL 360
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFRLP+ALDNRPLRF+E+EA++P+T+++SATP YE + G ++EQ++RPTGL+DP
Sbjct: 361 VEYGFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEAEHA-GRVIEQVVRPTGLVDP 419
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
I+V+P QVDDL+ +I + + K ERVLVTTLTKRMAE+L++YL H + Y+HSD+D
Sbjct: 420 EIEVRPAMTQVDDLLSQIRQRVAKDERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDID 479
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLV+ILDADKEGFLRS RSL QT GR
Sbjct: 480 TVERVEIIRDLRAGAFDVLVGINLLREGLDMPEVSLVSILDADKEGFLRSERSLIQTIGR 539
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR++HG+ I YAD +T SMQ +DET RRRAKQ+A+NEAHGI P+ + K+ I
Sbjct: 540 AARNLHGKAILYADNVTGSMQRAIDETERRRAKQIAFNEAHGIVPKGVRKDIKDILEGAV 599
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARL 662
V + + A + E S + L S ++ I +++M A++L+F AA+L
Sbjct: 600 VPGARGKRKGVAKVAEESGRYENELR---SPSEISKRIRQLEEKMYQLARDLEFEAAAQL 656
Query: 663 RDEAARLEKKL 673
RDE L ++L
Sbjct: 657 RDEIQTLRERL 667
>gi|1592818|emb|CAA63759.1| uvrB [Pseudomonas aeruginosa]
Length = 670
Score = 709 bits (1829), Expect = 0.0, Method: Composition-based stats.
Identities = 372/671 (55%), Positives = 484/671 (72%), Gaps = 7/671 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
++L SRFKP GDQPEAIRQ+V+G+ G+ QTLLGVTGSGKTF++ANV+A V RPTLVL+
Sbjct: 4 FQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLA 63
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLYGEFK FFP N+VEYFVSYYDYYQPEAY+P +DTYIEKD +IN IE++RL
Sbjct: 64 PNKTLAAQLYGEFKTFFPHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQMRL 123
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL R D ++V++VS +YG+ +P ++ + V+ L G R D+ ++ L YT
Sbjct: 124 SATKALLE-RPDAIIVATVSSIYGLGDPASYLKMVLHLDRGDRIDQRELLQRLTSLQYTR 182
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N ++F FRV+GD +DIFPA D A RVE +D EVE LS FDP TG L
Sbjct: 183 NDMDFARATFRVRGDVIDIFPAES--DLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRF 240
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
YP + +VT +E + AV +I +L ++D+L+ K EA+RL +R +DLEMI ELG
Sbjct: 241 TFYPKSHYVTPRETLLEAVDQIKAELKERLDYLRNNNKLVEAQRLEQRTRFDLEMILELG 300
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YC+GIENYSRY GR GE P L DY P + LLVIDESHV++PQ+ AM+ GDRSRKE L
Sbjct: 301 YCNGIENYSRYLSGRAPGEPPPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETL 360
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFRLP+ALDNRPLRF+E+EA++P+T+++SATP YE + G I+EQ++RPTGL+DP
Sbjct: 361 VEYGFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEAEHA-GRIIEQVVRPTGLVDP 419
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
I+V+P QVDDL+ +I + + K ERVLVTTLTKRMAE+L++YL H + Y+HSD+D
Sbjct: 420 EIEVRPAMTQVDDLLSQIRQRVAKDERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDID 479
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT GR
Sbjct: 480 TVERVEIIRDLRAGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 539
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR++HG+ I YAD +T SMQ +DET RRRAKQ+A+NEAHGI P+ + K+ I
Sbjct: 540 AARNLHGKAILYADNVTGSMQRAIDETERRRAKQIAFNEAHGIVPKGVRKDIKDILEGAV 599
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARL 662
V + + A + E S + L S ++ I +++M A++L+F AA+L
Sbjct: 600 VPGARGKRKGVAKVAEESGRYENELR---SPSEISKRIRQLEEKMYQLARDLEFEAAAQL 656
Query: 663 RDEAARLEKKL 673
RDE L ++L
Sbjct: 657 RDEIQTLRERL 667
>gi|70729426|ref|YP_259164.1| excinuclease ABC subunit B [Pseudomonas fluorescens Pf-5]
gi|90111046|sp|Q4KF19|UVRB_PSEF5 UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
gi|68343725|gb|AAY91331.1| UvrABC system, B protein [Pseudomonas fluorescens Pf-5]
Length = 671
Score = 708 bits (1828), Expect = 0.0, Method: Composition-based stats.
Identities = 367/672 (54%), Positives = 492/672 (73%), Gaps = 6/672 (0%)
Query: 2 DYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVL 61
+++L +RF+P GDQPEAIR +V+GI G+ QTLLGVTGSGKTF++ANV+A V RPTLVL
Sbjct: 3 EFQLVTRFQPAGDQPEAIRLMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQVQRPTLVL 62
Query: 62 SHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLR 121
+ NKTLAAQLYGEFKAFFP NAVEYFVSYYDYYQPEAY+P +DT+IEKD +IN IE++R
Sbjct: 63 APNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMR 122
Query: 122 LRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYT 181
L AT +LL RKD ++V++VSC+YG+ +PE + + V+ + G + D+ +R L + YT
Sbjct: 123 LSATKALLE-RKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQYT 181
Query: 182 NNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSE 241
N ++F FRV+GD +DI+PA D A R+E +D EVE +S FDP TG L
Sbjct: 182 RNDMDFARATFRVRGDVIDIYPAES--DLEAIRIELFDDEVESISAFDPLTGEVIRKLPR 239
Query: 242 LKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIREL 301
YP + +VT +E + A+ I V+L ++++L+ K EA+RL +R +DLEMI EL
Sbjct: 240 FTFYPKSHYVTPRETLLDAIEGIKVELQERLEYLRSNNKLVEAQRLEQRTRFDLEMILEL 299
Query: 302 GYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKEN 361
GYC+GIENYSRY GR AG P L DY P D LLVIDESHV++PQ+ AMY GDRSRKE
Sbjct: 300 GYCNGIENYSRYLSGRPAGAAPPTLYDYLPADALLVIDESHVSVPQVGAMYKGDRSRKET 359
Query: 362 LVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLD 421
LVEYGFRLP+ALDNRP+RFDE+E ++P+T+++SATP +YE + G +VEQ++RPTGL+D
Sbjct: 360 LVEYGFRLPSALDNRPMRFDEWEGVSPQTIFVSATPGNYEAEHA-GRVVEQVVRPTGLVD 418
Query: 422 PIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDV 481
P ++V+P QVDDL+ EI + + +ERVLVTTLTKRMAE+L++YL HG+ Y+HSD+
Sbjct: 419 PQVEVRPALTQVDDLLSEITKRVAVEERVLVTTLTKRMAEDLTDYLADHGVRVRYLHSDI 478
Query: 482 DTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 541
DT+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT G
Sbjct: 479 DTVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 538
Query: 542 RAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEG 601
RAAR+++GR I YAD+IT SM+ + ET RRR KQ+A+N A+GITP+ +VK+ A I
Sbjct: 539 RAARNLNGRAILYADRITGSMERAIGETERRRDKQIAFNLANGITPKGVVKDVADIMEGA 598
Query: 602 DVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAAR 661
V +S G + +++ A + S ++ I +++M A++L+F AA+
Sbjct: 599 TVPGSRSKKRKG--MAKAAEENARYENELRSPSEITKRIRQLEEKMYQLARDLEFEAAAQ 656
Query: 662 LRDEAARLEKKL 673
+RDE +L ++L
Sbjct: 657 MRDEITKLRERL 668
>gi|90021398|ref|YP_527225.1| excinuclease ABC, B subunit [Saccharophagus degradans 2-40]
gi|89950998|gb|ABD81013.1| excinuclease ABC, B subunit [Saccharophagus degradans 2-40]
Length = 666
Score = 708 bits (1828), Expect = 0.0, Method: Composition-based stats.
Identities = 368/671 (54%), Positives = 490/671 (73%), Gaps = 9/671 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
+K+ S++ P GDQP AI LV+GI G+ QTLLGVTGSGKTFT+ANV+ ++RPTLV++
Sbjct: 5 FKVKSKYTPAGDQPTAIEGLVKGIEAGLAHQTLLGVTGSGKTFTIANVIERIDRPTLVMA 64
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
HNKTLAAQLYGEFK FFP+NAVEYFVSYYDYYQPEAY+P +DT+I+KD ++N IE++RL
Sbjct: 65 HNKTLAAQLYGEFKDFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIDKDASVNDHIEQMRL 124
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +L+ RKD +VV++VS +YG+ +PE++ + ++ L+ G D+ +R L E YT
Sbjct: 125 SATKALME-RKDAIVVATVSAIYGLGDPESYLKMILHLNRGDTIDQRQILRRLAEMQYTR 183
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N ++F+ G +RV+GD +DIFPA + A RVE +D EV+ LS FDP TG + +
Sbjct: 184 NDIDFQRGTYRVRGDVIDIFPADSELE--ALRVELFDEEVDNLSIFDPLTGEVFRKVPRF 241
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
+YP + +VT + ++ A+ +I +L ++ L+E K EA+RL +R YDLEM++ELG
Sbjct: 242 TVYPKSHYVTPRNKIIDAIDEIKEELAERLQQLRENDKLVEAQRLEQRTRYDLEMMQELG 301
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YC+GIENYSRY GRD+GE P L DY P + LLVIDESHVT+PQI AMY GDRSRKE L
Sbjct: 302 YCNGIENYSRYLSGRDSGEPPPTLFDYLPAEALLVIDESHVTVPQIGAMYKGDRSRKETL 361
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFRLP+ALDNRP+RFDE+EA P+ +++SATP YE +G +VEQ++RPTGLLDP
Sbjct: 362 VEYGFRLPSALDNRPMRFDEWEARAPQMIFVSATPGKYEAEH-QGQVVEQVVRPTGLLDP 420
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
II+V+P +QVDD M EI + + +ERVL+T LTKRMAE+L++YL HG+ Y+HSD+D
Sbjct: 421 IIEVRPATSQVDDAMSEITKRVALEERVLITVLTKRMAEDLTDYLQEHGVRVRYLHSDID 480
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAI DADKEGFLRS RSL QT GR
Sbjct: 481 TVERVEIIRDLRIGEFDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSDRSLIQTIGR 540
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR+++G+ I YA++ITDSM+ +DET RRR KQ+ +NE HGITP I K+ A I EG
Sbjct: 541 AARNVNGKAILYAERITDSMRRAIDETERRRQKQIDHNEKHGITPIGITKSIADIM-EG- 598
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARL 662
A S + S + + + D D S + I +K M AAK+L+F +AA+L
Sbjct: 599 ARAPGSKSSSRKRVADKT---KDYEVDMNSSKDIWKTIQVMEKDMFQAAKDLEFEKAAQL 655
Query: 663 RDEAARLEKKL 673
RD+ L+ K+
Sbjct: 656 RDKINSLKAKI 666
>gi|53803510|ref|YP_114621.1| excinuclease ABC subunit B [Methylococcus capsulatus str. Bath]
gi|81823612|sp|Q605S7|UVRB_METCA UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
gi|53757271|gb|AAU91562.1| excinuclease ABC, B subunit [Methylococcus capsulatus str. Bath]
Length = 664
Score = 708 bits (1828), Expect = 0.0, Method: Composition-based stats.
Identities = 377/669 (56%), Positives = 494/669 (73%), Gaps = 13/669 (1%)
Query: 5 LTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLSHN 64
L S + P+GDQPEAIR+LV+G+N+G QTLLGVTGSGKTFT+ANV+A V RPTL+L+HN
Sbjct: 2 LRSGYAPSGDQPEAIRRLVEGLNDGELHQTLLGVTGSGKTFTIANVIAQVQRPTLILAHN 61
Query: 65 KTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRLRA 124
KTLAAQLYGE K FFPEN+VEYFVSYYDYYQPEAY+P +DTYIEKD ++N IE++RL A
Sbjct: 62 KTLAAQLYGEMKEFFPENSVEYFVSYYDYYQPEAYVPASDTYIEKDSSLNEHIEQMRLSA 121
Query: 125 TASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTNNK 184
T +L+ R D ++V++VS +YG+ P ++ E V+ L G D+ +R L E YT N+
Sbjct: 122 TKALIE-RHDTVIVATVSSIYGLGEPASYFEMVLHLVRGDMIDQRTLVRRLAELQYTRNE 180
Query: 185 VEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSELKI 244
E G++RV+GD +DI+PA + A RVE +D E+ERLS FDP TG ++ +
Sbjct: 181 AELRRGSYRVRGDVIDIYPAESEKE--ALRVELFDDEIERLSLFDPLTGEVISRIARYTV 238
Query: 245 YPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELGYC 304
YP +VT +E++ AV +I V+L +++ L+ K EA+RL +R +D+E+I E+GYC
Sbjct: 239 YPKTHYVTPREKLLEAVEEIKVELKDRLEHLRSQHKLVEAQRLEQRTLFDVEIILEVGYC 298
Query: 305 SGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENLVE 364
SGIENYSR+ GR GE P L DY P+D L+VIDESHVT+PQI AMY GDRSRKE LVE
Sbjct: 299 SGIENYSRFLSGRAPGEPPPTLFDYLPDDALIVIDESHVTVPQIGAMYRGDRSRKETLVE 358
Query: 365 YGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDPII 424
YGFRLP+ALDNRPL+F+EFEA P+ +Y+SATP YE S G +VEQ++RPTGL+DP +
Sbjct: 359 YGFRLPSALDNRPLKFEEFEARAPQRIYVSATPGPYERAHS-GAVVEQVVRPTGLVDPEV 417
Query: 425 DVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVDTL 484
+V+P + QVDDL+ EI ++ ERVLVTTLTKRMAE+L+EYL+ H ++ Y+HSDVDT+
Sbjct: 418 EVRPASTQVDDLLSEIRFRVQGGERVLVTTLTKRMAEDLTEYLMEHDVAVRYLHSDVDTV 477
Query: 485 ERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 544
ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS SL QT GRAA
Sbjct: 478 ERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSAVSLIQTIGRAA 537
Query: 545 RHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGDVS 604
R++HG+ I YADK+T SMQ +DET RRRAKQ+AYNE HG+TP+ I K+ D+
Sbjct: 538 RNLHGKAILYADKVTQSMQQAIDETERRRAKQIAYNERHGLTPRGITKSVT------DIL 591
Query: 605 ALQSDTESGAYIEESSMVAADPLADY-LSKPKLEA-LIASTKKQMLAAAKELDFLEAARL 662
+ S ++++ V A+P A Y ++KP A LI +++M A A++L+F EAARL
Sbjct: 592 EVSIPGGSAGSRKQAARV-AEPGAGYKVAKPSEAARLIKQLEEKMYAHARDLEFEEAARL 650
Query: 663 RDEAARLEK 671
RDE R+ +
Sbjct: 651 RDEIQRIRE 659
>gi|119357816|ref|YP_912460.1| excinuclease ABC, B subunit [Chlorobium phaeobacteroides DSM 266]
gi|119355165|gb|ABL66036.1| excinuclease ABC, B subunit [Chlorobium phaeobacteroides DSM 266]
Length = 685
Score = 708 bits (1828), Expect = 0.0, Method: Composition-based stats.
Identities = 364/673 (54%), Positives = 484/673 (71%), Gaps = 4/673 (0%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
Y+L S + P GDQP+AI L G+ G QTLLGVTGSGKTFTV+NV+A V++P LV+S
Sbjct: 9 YRLVSEYDPKGDQPKAIMALTDGVLRGDRWQTLLGVTGSGKTFTVSNVIAQVDKPVLVMS 68
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
HNKTLAAQLYGE + FFP+NAVEYFVSYYD+YQPEAYLP D YI KD+ IN EIE+LRL
Sbjct: 69 HNKTLAAQLYGELRQFFPDNAVEYFVSYYDFYQPEAYLPALDKYIAKDLRINDEIERLRL 128
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
+ T+SLLSGR+DV+VVSSVSC+YG+ +P+ + +++ L +G DRD F++ LV +Y
Sbjct: 129 KTTSSLLSGRRDVIVVSSVSCIYGLGSPDDWKAQIVELRSGMEKDRDLFLQELVSLHYIR 188
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
+ V+ G FRV+GD +D+ PA ++ +A RVEF+ E+E L TF+ ++G G +
Sbjct: 189 DDVDPGPGKFRVRGDIIDLVPA---HEELALRVEFFGSEIESLQTFNIQSGELLGKDTYA 245
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
IYPA F+ E + +A+ I+ +L +++ L+ + EA+RL ER YDLEM++ELG
Sbjct: 246 FIYPARQFIAEAETLKQAMVAIENELAGRLNELRRDDRLVEARRLEERTRYDLEMMKELG 305
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSGIENYSR+ GR GERP+CLLDYFPEDFL+++DESHVT+PQIR MYGGDRSRK L
Sbjct: 306 YCSGIENYSRHLAGRSEGERPYCLLDYFPEDFLVIVDESHVTLPQIRGMYGGDRSRKAIL 365
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VE+GFRLP+ALDNRPLRF+EF + P+ + +SATP D EL R GV+VEQL+RPTGLLDP
Sbjct: 366 VEHGFRLPSALDNRPLRFEEFTEIVPQVICVSATPGDLELERCGGVVVEQLVRPTGLLDP 425
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
++V+P Q+DDL+ EI R K + LV TLTKRM+E+L +Y + GI + Y+HS++
Sbjct: 426 PVEVRPVKGQIDDLLAEIRRHTAKGHKALVMTLTKRMSEDLDDYFKKVGIRSRYLHSEIK 485
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
+LER++I+ +LR G + L+GVNLLREGLDLPEVSLVAILDADKEGFLR+ RSL Q AGR
Sbjct: 486 SLERIQILRELRAGDVEVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGR 545
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR++ G V+FYAD +T S+ +DETARRR Q YNE HGITP+ I K+ +
Sbjct: 546 AARNVDGFVVFYADVLTRSIMEVLDETARRRTVQQLYNETHGITPRSIRKSLDQVLNTTS 605
Query: 603 VSALQSDTESGAY-IEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAAR 661
V+ + + + S V + L + + A++A + +M AA ++++ +AA
Sbjct: 606 VADAEERYRRKRFGLGAKSGVQSAALLHSFTPEESYAMVAELRLEMNEAAIQMEYEKAAY 665
Query: 662 LRDEAARLEKKLE 674
LRDE ARL LE
Sbjct: 666 LRDEIARLMHGLE 678
>gi|104780800|ref|YP_607298.1| exonuclease ABC subunit B (ATP-dependent DNA excision repair enzyme
UvrAC) [Pseudomonas entomophila L48]
gi|95109787|emb|CAK14492.1| exonuclease ABC subunit B (ATP-dependent DNA excision repair enzyme
UvrAC) [Pseudomonas]
Length = 671
Score = 708 bits (1827), Expect = 0.0, Method: Composition-based stats.
Identities = 363/672 (54%), Positives = 489/672 (72%), Gaps = 6/672 (0%)
Query: 2 DYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVL 61
+++L +RF+P GDQPEAIRQ+V+GI+ G+ QTLLGVTGSGKTF++ANV+ V RPT+VL
Sbjct: 3 EFQLVTRFQPAGDQPEAIRQMVEGIDAGLSHQTLLGVTGSGKTFSIANVIQQVQRPTMVL 62
Query: 62 SHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLR 121
+ NKTLAAQLYGEFKAFFP NAVEYFVSYYDYYQPEAY+P +DT+IEKD +IN IE++R
Sbjct: 63 APNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMR 122
Query: 122 LRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYT 181
L AT +LL R+D ++V++VSC+YG+ +PE + + V+ + G + D+ +R L + YT
Sbjct: 123 LSATKALLE-RRDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLTDLQYT 181
Query: 182 NNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSE 241
N+++F FRV+GD +DIFPA D A R+E +D EVE ++ FDP TG L
Sbjct: 182 RNEMDFARATFRVRGDVIDIFPAES--DLEAIRIELFDDEVENIAAFDPLTGEVIRKLPR 239
Query: 242 LKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIREL 301
YP + +VT +E + AV I +L ++++L K EA+RL +R +DLEMI EL
Sbjct: 240 FTFYPKSHYVTPRETLVEAVEGIKEELKERLEYLNTHNKLVEAQRLEQRTRFDLEMILEL 299
Query: 302 GYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKEN 361
GYC+GIENYSRY GR AG P L DY P+D LLVIDESHV++PQ+ AMY GDRSRKE
Sbjct: 300 GYCNGIENYSRYLSGRPAGAPPPTLYDYLPDDALLVIDESHVSVPQVGAMYKGDRSRKET 359
Query: 362 LVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLD 421
LVEYGFRLP+ALDNRP+RFDE+EA++P+T+++SATP YE + G +VEQ++RPTGL+D
Sbjct: 360 LVEYGFRLPSALDNRPMRFDEWEAVSPQTIFVSATPGPYEAEHA-GRVVEQVVRPTGLVD 418
Query: 422 PIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDV 481
P ++V+P QVDDL+ EI + + + ERVL TTLTKRMAE+L++YL H + Y+HSD+
Sbjct: 419 PQVEVRPALTQVDDLLSEIGKRVAQGERVLATTLTKRMAEDLTDYLADHDVRVRYLHSDI 478
Query: 482 DTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 541
DT+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT G
Sbjct: 479 DTVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 538
Query: 542 RAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEG 601
RAAR+++G+ I YAD IT SMQ +DET RRR KQ+A+N A+GI P+ +VK+ I
Sbjct: 539 RAARNLNGKAILYADNITGSMQRAIDETERRREKQIAFNAANGIVPKGVVKDITDIMEGA 598
Query: 602 DVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAAR 661
V +S G + +++ A + + ++ I +++M A++L+F AA+
Sbjct: 599 TVPGARSKKRKG--MAKAAEEAGRYEVELQTPAQITKRIKQLEEKMFQFARDLEFEAAAQ 656
Query: 662 LRDEAARLEKKL 673
LRDE +L ++L
Sbjct: 657 LRDEIGQLRERL 668
>gi|67938771|ref|ZP_00531291.1| Excinuclease ABC, B subunit [Chlorobium phaeobacteroides BS1]
gi|67915026|gb|EAM64354.1| Excinuclease ABC, B subunit [Chlorobium phaeobacteroides BS1]
Length = 690
Score = 708 bits (1827), Expect = 0.0, Method: Composition-based stats.
Identities = 365/674 (54%), Positives = 481/674 (71%), Gaps = 4/674 (0%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
++L S ++P GDQP+AI L QG+ +G Q LLGVTGSGKTFT+ANV+A VN+P L++S
Sbjct: 9 FRLESSYEPEGDQPQAIEALRQGVMDGQTNQVLLGVTGSGKTFTMANVIAEVNKPVLLIS 68
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
HNKTLAAQLYGE K FFP NAVEYF+SYYD+YQPEAY+P D YI KD+ IN EIE+LRL
Sbjct: 69 HNKTLAAQLYGELKQFFPHNAVEYFISYYDFYQPEAYIPTMDKYIAKDLKINDEIERLRL 128
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
+AT+SLLSGRKDV+VVSSVSC+YG+ PE + ++I L +RD F++ L+ ++
Sbjct: 129 KATSSLLSGRKDVIVVSSVSCIYGLGAPEDWKAQIIELRVNMEKERDSFLQELISLHFVR 188
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
+ + G FRV+GD +D+ P ++ A RVEF+ E+ERL FD TG +
Sbjct: 189 DDSDLAPGKFRVRGDVIDLVPM---HEESALRVEFFGDEIERLQLFDHTTGEIFEDEEYA 245
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
IYPA FV +E++ +A+ I+ +L +++ + K EA+R+ ER YDLEMI+ELG
Sbjct: 246 FIYPARQFVAGREKLQQAMLGIEDELAHRLNVFRSGEKFVEARRIEERTRYDLEMIKELG 305
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSGIENYSR+ GR AGERP+CLLDYFPED+L+++DESHVT PQIR MY GDRSRK L
Sbjct: 306 YCSGIENYSRHLSGRKAGERPYCLLDYFPEDYLVIVDESHVTFPQIRGMYAGDRSRKTIL 365
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFRLP+ALDNRPLRF+EFE + P+ + +SATP DYEL RS G +VEQL+RPTGLLDP
Sbjct: 366 VEYGFRLPSALDNRPLRFEEFETMVPQLISVSATPGDYELRRSGGSVVEQLVRPTGLLDP 425
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
I V+P Q+DDL+EEI + K + LV TLTKRM+E+L +YL + G+ T Y+HS++
Sbjct: 426 EIVVRPVNGQIDDLLEEIRKHTGKGFKSLVMTLTKRMSEDLHDYLRKAGLRTRYLHSEIK 485
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
+LER++I+ +LR G D L+GVNLLREGLDLPEVSLVAILDADKEGFLR +SL Q AGR
Sbjct: 486 SLERMQILRELRTGEIDILVGVNLLREGLDLPEVSLVAILDADKEGFLRDSKSLMQIAGR 545
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR++ G V+FYAD+IT SM+ +DET RRR+ Q +NE HG+ P IVK+ +
Sbjct: 546 AARNVEGMVVFYADRITASMRYVIDETERRRSVQRKFNEDHGVIPASIVKSVDQVLDTTG 605
Query: 603 VSALQSDTESGAY-IEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAAR 661
V+ + + +E+ S + L L + L A+ + +M AA+ ++F +AA
Sbjct: 606 VADAEDRFRRRRFGLEQRSRRGIEDLVGSLKREDLYAMAEELRLEMQEAAESMEFEKAAY 665
Query: 662 LRDEAARLEKKLEQ 675
LRDE +LE E+
Sbjct: 666 LRDEVTKLEDAAEE 679
>gi|119469464|ref|ZP_01612368.1| excinuclease ABC subunit B [Alteromonadales bacterium TW-7]
gi|119446999|gb|EAW28269.1| excinuclease ABC subunit B [Alteromonadales bacterium TW-7]
Length = 664
Score = 707 bits (1826), Expect = 0.0, Method: Composition-based stats.
Identities = 359/671 (53%), Positives = 484/671 (72%), Gaps = 13/671 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
++L S+FKP GDQP AI+QL +G+ G+ QTLLG TG+GKTFT+AN+++ +NRPT++++
Sbjct: 5 FQLKSQFKPAGDQPTAIKQLCEGLEAGLAHQTLLGATGTGKTFTMANIISDLNRPTIIMA 64
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
HNKTLAAQLYGE K FFP+NAVEYFVSYYDYYQPEAY+ +DT+IEKD +IN IE++RL
Sbjct: 65 HNKTLAAQLYGEMKEFFPKNAVEYFVSYYDYYQPEAYVVSSDTFIEKDASINEHIEQMRL 124
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL R+D ++V+SVS +YG+ +P+++ + ++ L G++ D+ +R L E YT
Sbjct: 125 SATKALLE-RRDTIIVASVSAIYGLGDPQSYMKMMLLLKVGEKVDQRDMLRRLAEIQYTR 183
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N +EF G +RV+G+ +DIFPA + A RVE +D E+ERLS FDP TG +
Sbjct: 184 NDIEFSRGTYRVRGEVLDIFPAES--ETYAVRVEMFDDEIERLSIFDPLTGAVEKHIVRA 241
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
IYP +VT +E++ A+ I ++L + L K E +R+ +R YD+EM+ ELG
Sbjct: 242 TIYPKTHYVTPREKILGAIENIKIELKDRRAQLLSANKLVEEQRIAQRTQYDIEMMTELG 301
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSGIENYSRY GR G+ P LLDY P+D L++IDESHVT+ QI AMY GDRSRKENL
Sbjct: 302 YCSGIENYSRYLSGRTPGDPPPTLLDYLPDDALMIIDESHVTVSQIGAMYKGDRSRKENL 361
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFR+P+A+DNRPLRF+EFEA+ P+T+Y+SATP D+E+ RS G + EQ+IRPTGLLDP
Sbjct: 362 VEYGFRMPSAMDNRPLRFEEFEAIAPQTIYVSATPGDFEMERSGGEVAEQIIRPTGLLDP 421
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
+I+V+P +QVDDL+ EI C+EK ERVLVTTLTKRM+E+L++YL HG+ Y+HSD+D
Sbjct: 422 LIEVRPVGDQVDDLLSEIYHCVEKGERVLVTTLTKRMSEDLTDYLSEHGVKVRYLHSDID 481
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ERV I+ DLR GV+D L+G+NLLREGLD+PEV+LVAILDADKEGFLRS RSL QT GR
Sbjct: 482 TVERVEIIRDLRAGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSTRSLIQTIGR 541
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AARH+ GR I Y DK+T SM +DET+RRR Q YN +GI P+ + K + G+
Sbjct: 542 AARHLDGRAILYGDKVTKSMAKAIDETSRRREIQHQYNIDNGIEPRALAKKILDVMDVGE 601
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARL 662
+ + + + +ES V LS ++ I + +M A A L+F +A +
Sbjct: 602 EAGPKDNLQ--LIRKESKKV--------LSAKEIATQIKQLETKMHAYASNLEFEKAGSV 651
Query: 663 RDEAARLEKKL 673
RDE L+++L
Sbjct: 652 RDEIHELQQQL 662
>gi|27366360|ref|NP_761888.1| excinuclease ABC subunit B [Vibrio vulnificus CMCP6]
gi|32130295|sp|Q8D891|UVRB_VIBVU UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
gi|56749771|sp|Q7MM80|UVRB_VIBVY UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
gi|27362561|gb|AAO11415.1|AE016807_134 Excinuclease ABC subunit B [Vibrio vulnificus CMCP6]
Length = 676
Score = 707 bits (1826), Expect = 0.0, Method: Composition-based stats.
Identities = 370/673 (54%), Positives = 485/673 (72%), Gaps = 7/673 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
Y L S + P+GDQP AI+QL +G++ G+ QTLLGVTGSGKTFT+ANV+A RP ++L+
Sbjct: 5 YDLVSDYAPSGDQPTAIKQLTEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLA 64
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLYGE KAFFP NAVEYFVSYYDYYQPEAY+P TDT+IEKD ++NA IE++RL
Sbjct: 65 PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDSSVNAHIEQMRL 124
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL RKD ++V+SVS +YG+ +PEA+ + ++ + G D+ +R L E Y+
Sbjct: 125 SATKALLE-RKDAIIVASVSAIYGLGDPEAYLQMMLHIRRGDVMDQRDILRRLAELQYSR 183
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGR-EYGLLSE 241
N + FE G FRV+G+ +D+FPA D V R+E +D E++ +S FDP TG + L
Sbjct: 184 NDIAFERGQFRVRGEVIDVFPAESDQDAV--RIEMFDDEIDCISVFDPLTGVVKQRDLPR 241
Query: 242 LKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIREL 301
IYP +VT +E++ +A+ I +L + +L++ K E +R+ +R +D+EM+ EL
Sbjct: 242 FTIYPKTHYVTPRERILQAIENIKQELRERQTYLRDNNKLLEEQRISQRTQFDIEMMNEL 301
Query: 302 GYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKEN 361
G+CSGIENYSRY GR GE P L DY P D LL+IDESHVT+PQI AMY GDRSRKE
Sbjct: 302 GFCSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKET 361
Query: 362 LVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLD 421
LVEYGFRLP+ALDNRPL+F+EFEAL P+T+++SATP +YEL +S G I +Q++RPTGLLD
Sbjct: 362 LVEYGFRLPSALDNRPLKFEEFEALAPQTIFVSATPGNYELEKSAGEIADQVVRPTGLLD 421
Query: 422 PIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDV 481
P+++V+P A QVDDL+ EI K ERVLVTTLTKRMAE+L+EYL H + Y+HSD+
Sbjct: 422 PVLEVRPVATQVDDLLSEIRIRAVKDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSDI 481
Query: 482 DTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 541
DT+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT G
Sbjct: 482 DTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 541
Query: 542 RAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEG 601
RAAR++HG+ I YAD IT SM+ MDET RRR KQ AYNE GI PQ + +N I G
Sbjct: 542 RAARNLHGKAILYADSITKSMKKAMDETERRREKQQAYNEKMGIQPQALKRNIKDIMELG 601
Query: 602 DVSALQSDTESGAYIEESSMVAADPLA-DYLSKPKLEALIASTKKQMLAAAKELDFLEAA 660
D++ +S + + S VA L+ + L+ +LE I + QM A++L+F AA
Sbjct: 602 DIT--KSRKQKVSKTVPLSKVAEPSLSYNVLTPQQLEKEITKLEAQMYKHAQDLEFELAA 659
Query: 661 RLRDEAARLEKKL 673
+ RDE +L ++
Sbjct: 660 QKRDEIEKLRQQF 672
>gi|37679377|ref|NP_933986.1| excinuclease ABC subunit B [Vibrio vulnificus YJ016]
gi|37198120|dbj|BAC93957.1| excinuclease ABC subunit B [Vibrio vulnificus YJ016]
Length = 680
Score = 707 bits (1826), Expect = 0.0, Method: Composition-based stats.
Identities = 370/673 (54%), Positives = 485/673 (72%), Gaps = 7/673 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
Y L S + P+GDQP AI+QL +G++ G+ QTLLGVTGSGKTFT+ANV+A RP ++L+
Sbjct: 9 YDLVSDYAPSGDQPTAIKQLTEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLA 68
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLYGE KAFFP NAVEYFVSYYDYYQPEAY+P TDT+IEKD ++NA IE++RL
Sbjct: 69 PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDSSVNAHIEQMRL 128
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL RKD ++V+SVS +YG+ +PEA+ + ++ + G D+ +R L E Y+
Sbjct: 129 SATKALLE-RKDAIIVASVSAIYGLGDPEAYLQMMLHIRRGDVMDQRDILRRLAELQYSR 187
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGR-EYGLLSE 241
N + FE G FRV+G+ +D+FPA D V R+E +D E++ +S FDP TG + L
Sbjct: 188 NDIAFERGQFRVRGEVIDVFPAESDQDAV--RIEMFDDEIDCISVFDPLTGVVKQRDLPR 245
Query: 242 LKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIREL 301
IYP +VT +E++ +A+ I +L + +L++ K E +R+ +R +D+EM+ EL
Sbjct: 246 FTIYPKTHYVTPRERILQAIENIKQELRERQTYLRDNNKLLEEQRISQRTQFDIEMMNEL 305
Query: 302 GYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKEN 361
G+CSGIENYSRY GR GE P L DY P D LL+IDESHVT+PQI AMY GDRSRKE
Sbjct: 306 GFCSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKET 365
Query: 362 LVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLD 421
LVEYGFRLP+ALDNRPL+F+EFEAL P+T+++SATP +YEL +S G I +Q++RPTGLLD
Sbjct: 366 LVEYGFRLPSALDNRPLKFEEFEALAPQTIFVSATPGNYELEKSAGEIADQVVRPTGLLD 425
Query: 422 PIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDV 481
P+++V+P A QVDDL+ EI K ERVLVTTLTKRMAE+L+EYL H + Y+HSD+
Sbjct: 426 PVLEVRPVATQVDDLLSEIRIRAVKDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSDI 485
Query: 482 DTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 541
DT+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT G
Sbjct: 486 DTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 545
Query: 542 RAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEG 601
RAAR++HG+ I YAD IT SM+ MDET RRR KQ AYNE GI PQ + +N I G
Sbjct: 546 RAARNLHGKAILYADSITKSMKKAMDETERRREKQQAYNEKMGIQPQALKRNIKDIMELG 605
Query: 602 DVSALQSDTESGAYIEESSMVAADPLA-DYLSKPKLEALIASTKKQMLAAAKELDFLEAA 660
D++ +S + + S VA L+ + L+ +LE I + QM A++L+F AA
Sbjct: 606 DIT--KSRKQKVSKTVPLSKVAEPSLSYNVLTPQQLEKEITKLEAQMYKHAQDLEFELAA 663
Query: 661 RLRDEAARLEKKL 673
+ RDE +L ++
Sbjct: 664 QKRDEIEKLRQQF 676
>gi|67917946|ref|ZP_00511549.1| Excinuclease ABC, B subunit [Chlorobium limicola DSM 245]
gi|67784475|gb|EAM43851.1| Excinuclease ABC, B subunit [Chlorobium limicola DSM 245]
Length = 684
Score = 707 bits (1826), Expect = 0.0, Method: Composition-based stats.
Identities = 362/674 (53%), Positives = 484/674 (71%), Gaps = 4/674 (0%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
Y+L S + P GDQP+AI QLV+G+ G QTLLGVTGSGKTFT++N++A V +P LV+S
Sbjct: 9 YRLVSSYSPKGDQPKAIEQLVEGVQRGDRWQTLLGVTGSGKTFTISNLIAQVGKPVLVMS 68
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
HNKTLAAQLYGE + FFP+NAVEYF+SYYD+YQPEAYLP D YI KD+ IN EIE+LRL
Sbjct: 69 HNKTLAAQLYGELRQFFPDNAVEYFISYYDFYQPEAYLPALDKYIAKDLRINDEIERLRL 128
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
+AT+SLLSGR+DV+VVSSVSC+YG+ +PE + ++I L G DRD F++ LV +Y
Sbjct: 129 KATSSLLSGRRDVIVVSSVSCIYGLGSPEEWKAQIIELRPGMEKDRDQFLQELVSLHYVR 188
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
+ ++ G FRV+GD +D+ PA ++ +A RVEF+ E+E L TFD ++G G
Sbjct: 189 DDMKPGPGKFRVRGDIIDLVPA---HEELAVRVEFFGPEIESLQTFDMQSGEVLGRDDYA 245
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
IYPA FV +EQ+ A+ I+ +L +++ L+ + EA+RL ER YDLEM++ELG
Sbjct: 246 FIYPARQFVAGEEQMRHAMLAIENELAGRLNELRGENRLIEARRLEERTRYDLEMMKELG 305
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSGIENYSR+ GR+ G+RP CLLDYFPED+L+V+DESHVT+PQIR MYGGDRSRK L
Sbjct: 306 YCSGIENYSRHLAGREPGDRPHCLLDYFPEDYLVVVDESHVTLPQIRGMYGGDRSRKTIL 365
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VE+GFRLP+ALDNRPLRFDE+ L P+ + +SATP D EL S GVIVEQL+RPTGLLDP
Sbjct: 366 VEHGFRLPSALDNRPLRFDEYVGLVPQVVCVSATPGDLELEYSGGVIVEQLVRPTGLLDP 425
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
++V+P Q+DDL+ EI + + + L+ TLTKRM+E+L +Y + GI + Y+HS++
Sbjct: 426 PVEVRPVKGQIDDLLGEIRKHTARGFKALIMTLTKRMSEDLDDYFRKTGIRSRYLHSEIK 485
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
+LER++I+ +LR G D L+GVNLLREGLDLPEVSLVAILDADKEGFLR+ RSL Q AGR
Sbjct: 486 SLERMQILRELRTGEIDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGR 545
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR+ G V+ YAD +T S++ +DET+RRR Q AYNE HGI PQ I+K+ +
Sbjct: 546 AARNSEGFVVLYADVLTRSIREVLDETSRRRKIQQAYNEEHGIVPQSIIKSVEQVLNTTG 605
Query: 603 VSALQSDTESGAY-IEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAAR 661
V+ + + +E L D L+ + ++ S + +M AA ++++ +AA
Sbjct: 606 VADAEERYRRKRFGLEPKPERLLSTLIDTLTAEECYSMAESLRLEMQEAALKMEYEKAAY 665
Query: 662 LRDEAARLEKKLEQ 675
LRDE + E + +
Sbjct: 666 LRDEITKFEHRANE 679
>gi|88859835|ref|ZP_01134474.1| ATP-dependent DNA excision repair enzyme UvrAC [Pseudoalteromonas
tunicata D2]
gi|88817829|gb|EAR27645.1| ATP-dependent DNA excision repair enzyme UvrAC [Pseudoalteromonas
tunicata D2]
Length = 664
Score = 707 bits (1824), Expect = 0.0, Method: Composition-based stats.
Identities = 360/672 (53%), Positives = 481/672 (71%), Gaps = 16/672 (2%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
++L S F+P+GDQP AI+QL +G++ G+ QTLLG TG+GKTFT+AN++ +NRPT++++
Sbjct: 5 FRLQSDFQPSGDQPTAIKQLCEGLDAGLAHQTLLGATGTGKTFTMANIIHNLNRPTIIMA 64
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
HNKTLAAQLYGE K FFP+N VEYFVSYYDYYQPEAY+ +DT+IEKD +IN IE++RL
Sbjct: 65 HNKTLAAQLYGEMKEFFPDNCVEYFVSYYDYYQPEAYVVASDTFIEKDASINEHIEQMRL 124
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL R+DV++V+SVS +YG+ +P+++ + ++ L G++ D+ +R L E YT
Sbjct: 125 SATKALLE-RRDVIIVASVSAIYGLGDPDSYMKMMLLLKVGEKVDQRDMLRRLSELQYTR 183
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N ++F+ +RV+G+ VDIFPA + A RVE +D E+ERLS FDP TG +
Sbjct: 184 NDIDFQRATYRVRGEVVDIFPAES--ETYAIRVEMFDDEIERLSIFDPLTGAVEKHIVRA 241
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
IYP + +VT +E + +A +I +L +FL + K E +R+ +R YD+EM+ ELG
Sbjct: 242 TIYPKSHYVTPRETILKATEEIKAELKQHREFLLKHNKLVEEQRVAQRTQYDIEMMVELG 301
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSG+ENYSRY GR GE P LLDY P+D L++IDESHVT+ QI AMY GDRSRKENL
Sbjct: 302 YCSGVENYSRYLSGRAPGEPPPTLLDYLPDDSLMIIDESHVTVSQIGAMYKGDRSRKENL 361
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFR+P+A+DNRPL+FDEFEA+ P+T+Y+SATP +YE+ RS G + EQ+IRPTGLLDP
Sbjct: 362 VEYGFRMPSAMDNRPLKFDEFEAIAPQTIYVSATPGEYEITRSCGEVAEQVIRPTGLLDP 421
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
I+V+P A QVDDL+ EI + +E KERVLVTTLTKRM+E+L++YL HG+ Y+HSD+D
Sbjct: 422 EIEVRPVATQVDDLLSEIYKRVELKERVLVTTLTKRMSEDLTDYLADHGVKVRYLHSDID 481
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ER+ I+ DLR GV+D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT GR
Sbjct: 482 TVERIEIIRDLRLGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTRSLIQTIGR 541
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AARH+ GR I Y DKIT SM ++ET RRR Q AYN HG P + K I
Sbjct: 542 AARHLSGRAILYGDKITKSMAAAIEETERRREIQHAYNIKHGKVPMALQKKVTDI----- 596
Query: 603 VSALQSDTESGAYIEESSMVAA-DPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAAR 661
+ G + M A D LS ++ I + +M+ A+EL+F +AA+
Sbjct: 597 -------MDVGTTVTSEQMTAVNDASYAVLSAGQIAEKIKKLESKMMQHARELEFEKAAQ 649
Query: 662 LRDEAARLEKKL 673
+RD+ L+ L
Sbjct: 650 VRDQIQHLQHSL 661
>gi|52425426|ref|YP_088563.1| excinuclease ABC subunit B [Mannheimia succiniciproducens MBEL55E]
gi|81825519|sp|Q65ST2|UVRB_MANSM UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
gi|52307478|gb|AAU37978.1| UvrB protein [Mannheimia succiniciproducens MBEL55E]
Length = 678
Score = 707 bits (1824), Expect = 0.0, Method: Composition-based stats.
Identities = 365/674 (54%), Positives = 484/674 (71%), Gaps = 12/674 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
+ L S FKP+GDQP+AI L + +N+G+ QTLLGVTGSGKTFT+ANV+A +NRP ++L+
Sbjct: 10 FILHSEFKPSGDQPQAIEILAENLNDGLAHQTLLGVTGSGKTFTIANVIAKLNRPAMLLA 69
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLY E KAFFPENAVEYFVSYYDYYQPEAY+P +DT+IEKD +IN +IE++RL
Sbjct: 70 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT S L R+D +VV+SVS +YG+ +P+++ + ++ L TG D+ + L E YT
Sbjct: 130 SATKSFLE-RRDTIVVASVSAIYGLGDPDSYLKMMLHLQTGAIIDQRQILVRLAELQYTR 188
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N F+ G FRV+G+ +DIFPA D A R+E +D E+ERLS FDP TG +G +
Sbjct: 189 NDQAFQRGTFRVRGEIIDIFPAES--DDRAVRIELFDDEIERLSLFDPLTGTGFGAVPRF 246
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
+YP +VT +EQ+ A+ KI +L + ++ + K E +R+ +R +D+EM+ ELG
Sbjct: 247 TVYPKTHYVTPREQILDAIEKIKSELADRREYFIKENKLLEEQRITQRTQFDIEMMNELG 306
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSGIENYSRY GR+ GE P L DY P D LLVIDESHVT+PQI MY GDRSRKE L
Sbjct: 307 YCSGIENYSRYLSGRNEGEPPPTLFDYMPSDALLVIDESHVTVPQIGGMYRGDRSRKETL 366
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFRLP+ALDNRPLRF+EFE L P+T+Y+SATP YEL +S I++Q++RPTGLLDP
Sbjct: 367 VEYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGTEIIDQVVRPTGLLDP 426
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
I+++P + QVDDL+ E + ++ ERVLVTTLTKRMAE+L++YL HGI Y+HSD+D
Sbjct: 427 EIEIRPVSIQVDDLLSEARQRADRNERVLVTTLTKRMAEDLTDYLDEHGIRVRYLHSDID 486
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT GR
Sbjct: 487 TVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGR 546
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR++ G+ I YAD+IT+SM+ + ET RRR KQ+ YNE HGITPQ + K + G
Sbjct: 547 AARNLKGKAILYADRITNSMEKAITETNRRREKQMKYNEEHGITPQGLNKKVGELLDIGQ 606
Query: 603 VSALQSDTESGAYIEESSMVAADPLADY---LSKPKLEALIASTKKQMLAAAKELDFLEA 659
+ +S + S AA+P Y ++ + + I ++QM A++L+F +A
Sbjct: 607 GGSNKSRNKP------RSQKAAEPATTYAIPMTAKEYQQQIKKLEQQMYKFAQDLEFEKA 660
Query: 660 ARLRDEAARLEKKL 673
A +RD+ +L ++
Sbjct: 661 AAIRDQLHKLREQF 674
>gi|24112147|ref|NP_706657.1| excinuclease ABC subunit B [Shigella flexneri 2a str. 301]
gi|30062264|ref|NP_836435.1| excinuclease ABC subunit B [Shigella flexneri 2a str. 2457T]
gi|110804780|ref|YP_688300.1| excision nuclease subunit B [Shigella flexneri 5 str. 8401]
gi|81839440|sp|Q83S42|UVRB_SHIFL UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
gi|24050984|gb|AAN42364.1| excision nuclease subunit B [Shigella flexneri 2a str. 301]
gi|30040509|gb|AAP16241.1| excision nuclease subunit B [Shigella flexneri 2a str. 2457T]
gi|110614328|gb|ABF02995.1| excision nuclease subunit B [Shigella flexneri 5 str. 8401]
Length = 673
Score = 706 bits (1823), Expect = 0.0, Method: Composition-based stats.
Identities = 372/669 (55%), Positives = 480/669 (71%), Gaps = 6/669 (0%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
+KL S FKP+GDQPEAIR+L +G+ +G+ QTLLGVTGSGKTFT+ANV+A + RPT+VL+
Sbjct: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLYGE K FFPENAVEYFVSYYDYYQPEAY+P +DT+IEKD ++N IE++RL
Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT ++L R+DV+VV+SVS +YG+ +P+ + + ++ L G D+ +R L E Y
Sbjct: 125 SATKAMLE-RRDVIVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYAR 183
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N F+ G FRV+G+ +DIFPA D +A RVE +D EVERLS FDP TG+ +
Sbjct: 184 NDQAFQRGTFRVRGEVIDIFPAES--DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
IYP +VT +E++ +A+ +I +L A+ L E K E +RL +R +DLEM+ ELG
Sbjct: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMDELG 301
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSGIENYSR+ GR GE P L DY P D LLV+DESHVTIPQI MY GDR+RKE L
Sbjct: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL 361
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFRLP+ALDNRPL+F+EFEAL P+T+Y+SATP +YEL +S G +V+Q++RPTGLLDP
Sbjct: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP 421
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
II+V+P A QVDDL+ EI + ERVLVTTLTKRMAE+L+EYL HG Y+HSD+D
Sbjct: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ER+ I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT GR
Sbjct: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR+++G+ I Y D+ T SM + ET RRR KQ YNE HGITPQ + K I G
Sbjct: 542 AARNVNGKAILYGDRSTPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARL 662
A T++ + +V D + + L+ I + M+ A+ L+F EAA++
Sbjct: 602 NIA---KTKAKGRGKSRPIVEPDNVPMDMLPKALQQKIHELEGLMMQHAQNLEFEEAAQI 658
Query: 663 RDEAARLEK 671
RD+ +L +
Sbjct: 659 RDQLHQLRE 667
>gi|53728717|ref|ZP_00348221.1| COG0556: Helicase subunit of the DNA excision repair complex
[Haemophilus somnus 2336]
Length = 677
Score = 706 bits (1822), Expect = 0.0, Method: Composition-based stats.
Identities = 364/673 (54%), Positives = 485/673 (72%), Gaps = 8/673 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
+ L S F+P GDQP+AI +L + +N+G+ QTLLGVTGSGKTFT+ANV+A +NRP +VL+
Sbjct: 9 FILHSDFQPAGDQPQAIAKLAENLNDGLAHQTLLGVTGSGKTFTIANVIAKLNRPAMVLA 68
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLY E KAFFPENAVEYFVSYYDYYQPEAY+P +DT+IEKD +IN +IE++RL
Sbjct: 69 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 128
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT S L R+D +VV+SVS +YG+ +P+++ + ++ L G D+ + L E YT
Sbjct: 129 SATKSFLE-RRDTIVVASVSAIYGLGDPDSYLKMMLHLQHGAIVDQRQILAKLAELQYTR 187
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N F+ G FRV+G+ +DIFPA D A R+E +D E+ERLS FDP TG +G +
Sbjct: 188 NDQVFQRGTFRVRGEIIDIFPAES--DDRAVRIELFDDEIERLSLFDPLTGANFGAIPRY 245
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
IYP +VT +E++ A+ KI ++L A+ ++L + E +RL +R +D+EM+ ELG
Sbjct: 246 TIYPKTHYVTPRERILEAIEKIKLELQARREYLLANNRLVEEQRLTQRTQFDIEMMNELG 305
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSGIENYSRY GRD GE P L DY P D LL+IDESHVT+PQI MY GDRSRKE L
Sbjct: 306 YCSGIENYSRYLSGRDEGEPPPTLFDYIPSDGLLIIDESHVTVPQIGGMYRGDRSRKETL 365
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFRLP+ALDNRPLRF+EFE L P+T+Y+SATP YEL +S I++Q++RPTGLLDP
Sbjct: 366 VEYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGDEIIDQVVRPTGLLDP 425
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
++++P A QVDDL+ E + E+ ERVLVTTLTKRMAE+L++YL HGI Y+HSD+D
Sbjct: 426 EVEIRPVAIQVDDLLSEARKRAEQNERVLVTTLTKRMAEDLTDYLEEHGIRVRYLHSDID 485
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT GR
Sbjct: 486 TVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGR 545
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR+++G+ I YAD IT SMQ +DET RRR KQ+ YN G+ PQ + K + G
Sbjct: 546 AARNLNGKAILYADSITKSMQKAIDETHRRREKQMKYNAEKGVVPQALNKKVGELLDIGQ 605
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPK-LEALIASTKKQMLAAAKELDFLEAAR 661
+ +S T++ A ++ + L ++ PK + + ++QM A++L+F +AA
Sbjct: 606 GAITKSKTKARA----KTVAESSALYQKINSPKDYQQQVKKLEQQMYKFAQDLEFEKAAA 661
Query: 662 LRDEAARLEKKLE 674
+RD+ L+++ +
Sbjct: 662 IRDQLQELKERFK 674
>gi|152978761|ref|YP_001344390.1| excinuclease ABC, B subunit [Actinobacillus succinogenes 130Z]
gi|150840484|gb|ABR74455.1| excinuclease ABC, B subunit [Actinobacillus succinogenes 130Z]
Length = 692
Score = 706 bits (1822), Expect = 0.0, Method: Composition-based stats.
Identities = 368/672 (54%), Positives = 481/672 (71%), Gaps = 10/672 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
+ L S FKP+GDQP AI +LV+ +N+G+ QTLLGVTGSGKTFT+ANV+A +NRP ++L+
Sbjct: 24 FILHSDFKPSGDQPSAIAKLVENLNDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 83
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLY E K FFPENAVEYFVSYYDYYQPEAY+P +DT+IEKD +IN +IE++RL
Sbjct: 84 PNKTLAAQLYAEMKTFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 143
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT S L R+D +VV+SVS +YG+ +P+++ + ++ L TG D+ + L E YT
Sbjct: 144 SATKSFLE-RRDTIVVASVSAIYGLGDPDSYLKMMLHLQTGAIIDQRQILARLAELQYTR 202
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N F+ G FRV+G+ +DIFPA D A R+E +D E+ERLS FDP TG +G +
Sbjct: 203 NDQAFQRGTFRVRGEIIDIFPAES--DDQAVRIELFDNEIERLSLFDPLTGTGFGRIPRF 260
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
+YP +VT +EQ+ A+ KI +L + ++ + K E +R+ +R +D+EM+ ELG
Sbjct: 261 TVYPKTHYVTPREQILDAIEKIKTELAKRREYFIKENKLLEEQRITQRTLFDIEMMNELG 320
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSGIENYSRY GR+ GE P L DY P D LL+IDESHVT+PQI MY GDRSRKE L
Sbjct: 321 YCSGIENYSRYLSGRNEGEPPPTLFDYVPADGLLIIDESHVTVPQIGGMYRGDRSRKETL 380
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFRLP+ALDNRPLRF+EFE L P+T+Y+SATP YEL +S I++Q++RPTGLLDP
Sbjct: 381 VEYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGSEIIDQVVRPTGLLDP 440
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
I+++P A QVDDL+ E + EK ER+LVTTLTKRMAE+L++YL HG+ Y+HSD+D
Sbjct: 441 EIEIRPVAIQVDDLLSESRQRAEKNERILVTTLTKRMAEDLTDYLEEHGVRVRYLHSDID 500
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT GR
Sbjct: 501 TVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGR 560
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR++ G+ I YAD+IT SM + ET RRR KQ+ YNE HGI PQ + K + G
Sbjct: 561 AARNLKGKAILYADRITQSMDKAITETNRRREKQMKYNEEHGIIPQGLNKKVGELLDIGQ 620
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPK-LEALIASTKKQMLAAAKELDFLEAAR 661
S ++ +S IE SS P PK L+ I ++QM A++L+F +AA
Sbjct: 621 NSN-RNKGKSRNKIENSSAHYKLP-----KTPKELQKQIKKLEQQMYKFAQDLEFEKAAA 674
Query: 662 LRDEAARLEKKL 673
+RD+ +L ++
Sbjct: 675 MRDQLHQLRQEF 686
>gi|118067482|ref|ZP_01535738.1| excinuclease ABC, B subunit [Serratia proteamaculans 568]
gi|118018086|gb|EAV32002.1| excinuclease ABC, B subunit [Serratia proteamaculans 568]
Length = 670
Score = 706 bits (1822), Expect = 0.0, Method: Composition-based stats.
Identities = 375/673 (55%), Positives = 480/673 (71%), Gaps = 13/673 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
+KL S FKP GDQP+AI +L +G+ +G+ QTLLGVTGSGKTFTVANV+A +NRPT+VL+
Sbjct: 5 FKLHSEFKPAGDQPQAISKLEEGLEDGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 64
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLYGE K FFPENAVEYFVSYYDYYQPEAY+P +DT+IEKD A+N IE++RL
Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAVNEHIEQMRL 124
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL R+DV+VV+SVS +YG+ +P+ + + ++ L G D+ +R L E Y
Sbjct: 125 SATKALLE-RRDVIVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLAELQYAR 183
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N F+ FRV+G+ +D+FPA D +A R+E +D EVERLS FDP TG+ ++
Sbjct: 184 NDQAFQRATFRVRGEVIDVFPAES--DELALRIELFDEEVERLSLFDPLTGQIEQVVQRF 241
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
IYP + +VT +E++ +A+ +I VDL + L K E +RL +R +DLEM++ELG
Sbjct: 242 TIYPKSHYVTPRERILQAMEEIKVDLAERRKVLLANNKLLEEQRLTQRTQFDLEMMKELG 301
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSGIENYSRY GR GE P L DY P D LLV+DESHVTIPQI AMY GDRSRKE L
Sbjct: 302 YCSGIENYSRYLSGRKEGEPPPTLFDYLPADGLLVVDESHVTIPQIGAMYKGDRSRKETL 361
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFRLP+ALDNRP+RF+EFEAL P+T+Y+SATP YEL +S I++Q++RPTGLLDP
Sbjct: 362 VEYGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGDDIIDQVVRPTGLLDP 421
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
+I+V+P QVDDL+ EI + + ERVLVTTLTKRMAE+L+EYL HG Y+HSD+D
Sbjct: 422 LIEVRPVTTQVDDLLSEIRKRVAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT GR
Sbjct: 482 TVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR+++G+ I Y D+ITDSM + ET RRRAKQ A+NE +GI PQ + K + +
Sbjct: 542 AARNLNGKAILYGDRITDSMARAISETERRRAKQQAFNEENGIVPQGLNKKVSDV----- 596
Query: 603 VSALQSDTESGAYIEESSMVAADPLADY--LSKPKLEALIASTKKQMLAAAKELDFLEAA 660
LQ AA+ + Y L+ L+ I + QM A+ L+F AA
Sbjct: 597 ---LQLGKPGNRGKGRGKGKAAENVGQYKNLTPKALDQKIRELEAQMYTHAQNLEFELAA 653
Query: 661 RLRDEAARLEKKL 673
LRDE +L ++
Sbjct: 654 GLRDEIHQLREQF 666
>gi|50121744|ref|YP_050911.1| excinuclease ABC subunit B [Erwinia carotovora subsp. atroseptica
SCRI1043]
gi|81827077|sp|Q6D3C4|UVRB_ERWCT UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
gi|49612270|emb|CAG75720.1| excision nuclease ABC subunit B [Erwinia carotovora subsp.
atroseptica SCRI1043]
Length = 670
Score = 706 bits (1822), Expect = 0.0, Method: Composition-based stats.
Identities = 380/673 (56%), Positives = 475/673 (70%), Gaps = 13/673 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
+ L S FKP GDQPEAIR+L +G+ +G+ QTLLGVTGSGKTFT+ANV+A +NRPT++L+
Sbjct: 5 FTLNSDFKPAGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMMLA 64
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLYGE K FFPENAVEYFVSYYDYYQPEAY+P +DT+IEKD ++N IE++RL
Sbjct: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL R+DV+VV+SVS +YG+ +P+ + + ++ L G D+ +R L E Y
Sbjct: 125 SATKALLE-RRDVIVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQYAR 183
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N F+ G FRV+G+ +DIFPA D +A RVE +D EVERLS FDP TG +
Sbjct: 184 NDQAFQRGTFRVRGEVIDIFPAES--DEIALRVELFDEEVERLSLFDPLTGHVLQTVPRY 241
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
IYP +VT +E++ +A+ I V+L + L K E +RL +R +DLEM+ ELG
Sbjct: 242 TIYPKTHYVTPRERILQAMEDIKVELADRKKVLLANDKLVEEQRLSQRTQFDLEMMNELG 301
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSGIENYSRY GR GE P L DY P D LLVIDESHVT+PQI MY GDR+RKE L
Sbjct: 302 YCSGIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETL 361
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFRLP+ALDNRP++F+EFEAL P+T+Y+SATP+ YEL +S G +++Q++RPTGLLDP
Sbjct: 362 VEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPSHYELEKSGGDVIDQVVRPTGLLDP 421
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
II+V+P QVDDL+ EI ERVLVTTLTKRMAE+L+EYL HG Y+HSD+D
Sbjct: 422 IIEVRPVGTQVDDLLSEIRLRAAINERVLVTTLTKRMAEDLTEYLQEHGERVRYLHSDID 481
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT GR
Sbjct: 482 TVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR++ G+ I Y D+IT SM + ET RRR KQ AYN HGI PQ I K + I
Sbjct: 542 AARNLRGKAILYGDRITASMAKAISETERRREKQEAYNTEHGIVPQGINKKISDI----- 596
Query: 603 VSALQSDTESGAYIEESSMVAADPLADY-LSKPK-LEALIASTKKQMLAAAKELDFLEAA 660
LQ + + AA+P A Y L PK LE I + +ML A+ L+F EAA
Sbjct: 597 ---LQLGQSANKGKGRGNRKAAEPAARYELMTPKALELKIRELESKMLTHAQNLEFEEAA 653
Query: 661 RLRDEAARLEKKL 673
LRDE L +
Sbjct: 654 ALRDEVQVLRAQF 666
>gi|145619926|ref|ZP_01775968.1| excinuclease ABC, B subunit [Geobacter bemidjiensis Bem]
gi|144943719|gb|EDJ78802.1| excinuclease ABC, B subunit [Geobacter bemidjiensis Bem]
Length = 662
Score = 706 bits (1822), Expect = 0.0, Method: Composition-based stats.
Identities = 372/669 (55%), Positives = 478/669 (71%), Gaps = 19/669 (2%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
++L + F+P GDQP AI +L G+ G P Q LLGVTGSGKTFT+A V+A N PTLVL+
Sbjct: 4 FELVTSFEPRGDQPRAIAELADGVLRGDPHQVLLGVTGSGKTFTMAQVIARCNCPTLVLA 63
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLYGEFK FP NAVEYFVSYYDYYQPEAY+P +DT+IEKD +IN EI+K R
Sbjct: 64 PNKTLAAQLYGEFKELFPNNAVEYFVSYYDYYQPEAYIPSSDTFIEKDSSINDEIDKFRH 123
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT SLL+ R+DV++V+SVSC+YG+ +PE++ E I G RD ++ LV Y
Sbjct: 124 SATRSLLT-RRDVIIVASVSCIYGIGSPESYQEMQIRFREGDEVGRDEMLQRLVAIQYQR 182
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N V+F G+FRV+GD+V++FPA + D A R+EF+ V+ +S DP G + LS
Sbjct: 183 NDVDFHRGSFRVRGDTVEVFPAHD--DERALRIEFFGDTVDAISEIDPLRGVQLQKLSRC 240
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
IYPA+ +V +++ ++RAV +I ++L ++ + EA+R+ +R +D+EM+ E+G
Sbjct: 241 AIYPASHYVASRQTLERAVEQIRLELEERLRYFNSQNMLLEAQRIEQRTFFDIEMMEEMG 300
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
+C GIENYSR+FDGR AGE P+ L+DYFP+DFLLVIDESH+T+ Q+ MY GDRSRKE L
Sbjct: 301 FCQGIENYSRHFDGRAAGEPPYTLIDYFPKDFLLVIDESHITVSQVGGMYRGDRSRKETL 360
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
V YGFRLP+ALDNRPL F EF+ +T+Y+SATPADYEL +EGV+VEQLIRPTGL+DP
Sbjct: 361 VNYGFRLPSALDNRPLTFQEFQKKLHQTIYVSATPADYELKLAEGVVVEQLIRPTGLIDP 420
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
I+V+P A QVDDL+ E + ERVLVTTLTKRMAEEL++Y GI Y+HSD+D
Sbjct: 421 AIEVRPAAGQVDDLLHEARETAARGERVLVTTLTKRMAEELTDYYRELGIRVRYLHSDID 480
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T +R+ I+ DLR G +D L+G+NLLREGLDLPEVSLVAILDADKEGFLRS RSL QT GR
Sbjct: 481 TFQRMEILRDLRLGEFDLLVGINLLREGLDLPEVSLVAILDADKEGFLRSTRSLIQTCGR 540
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR++ GRV+ YADK+T SMQ +DET RRRA Q AYNE HGITP+ + + +
Sbjct: 541 AARNVSGRVLMYADKVTGSMQAAIDETLRRRALQTAYNEEHGITPESVRRMIGNV----- 595
Query: 603 VSALQSDTESGAYIEESSMVAADPLA-DYLSKPKLEALIASTKKQMLAAAKELDFLEAAR 661
LQ+ EE V A ++LS +LE + +K+MLAAAK +F AA
Sbjct: 596 ---LQAP-------EEKDWVTVPASAEEFLSVKELEKTLKRLRKEMLAAAKAQEFERAAE 645
Query: 662 LRDEAARLE 670
LRD+ RLE
Sbjct: 646 LRDKIKRLE 654
>gi|117920610|ref|YP_869802.1| excinuclease ABC, B subunit [Shewanella sp. ANA-3]
gi|117612942|gb|ABK48396.1| excinuclease ABC, B subunit [Shewanella sp. ANA-3]
Length = 673
Score = 706 bits (1822), Expect = 0.0, Method: Composition-based stats.
Identities = 372/673 (55%), Positives = 482/673 (71%), Gaps = 10/673 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
++L S+F P GDQP AI +LV G+ G+ QTLLGVTGSGKTFT+ANV+A + RPT++++
Sbjct: 6 FQLESQFAPAGDQPTAIAKLVDGLESGLACQTLLGVTGSGKTFTIANVIAQLGRPTIIMA 65
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLYGE K FFP NAVEYFVSYYDYYQPEAY+P ++T+IEKD ++NA IE++RL
Sbjct: 66 PNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQMRL 125
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL RKDV++++SVS +YG+ +P+++ + ++ L G + ++ L E YT
Sbjct: 126 SATKALLE-RKDVVLIASVSAIYGLGDPDSYMKMLLHLRQGDTMGQRDILKRLSELQYTR 184
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N +E + G FR +G+ +DIFPA G+ RVE +D E+ERLS FDP TG+ ++
Sbjct: 185 NDLELQRGTFRARGEVIDIFPADSDRYGI--RVELFDDEIERLSEFDPLTGQIVKRIART 242
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
+YP +VT +E++ A I +L + +L + K EA+R++ERV YD+EM+ ELG
Sbjct: 243 TVYPKTHYVTPREKILEATESIKQELRERKQYLLDNNKLIEAQRIHERVQYDIEMMVELG 302
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSGIENYSRY GR GE P LLDY P D LL+IDESHVT+PQI AMY GDRSRK L
Sbjct: 303 YCSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKTTL 362
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFRLP+ALDNRPL+F+EFE L P+T+Y+SATP YEL++S G IVEQ++RPTGLLDP
Sbjct: 363 VEYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPNPYELDKSGGEIVEQVVRPTGLLDP 422
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
++V+P + QVDDL+ E+A+ + ERVLVTTLTKRM+E+L+EYL HG+ Y+HSD+D
Sbjct: 423 ELEVRPVSIQVDDLLSEVAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDID 482
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLV ILDADKEGFLRS RSL QT GR
Sbjct: 483 TVERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGR 542
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR+++G+VI YAD+IT SM M ET RRR KQ AYN HGI P+ +VK + D
Sbjct: 543 AARNVNGKVILYADRITQSMAKAMGETERRREKQHAYNLEHGIVPKGVVKRITDVMDVDD 602
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLS--KPKLEALIASTKKQMLAAAKELDFLEAA 660
DTE G Y S A+P A +L I +KQM A+ L+F +AA
Sbjct: 603 ----GRDTEKG-YSPSSLGKVAEPKAKRYQADAAQLSHDIDKLEKQMHEHARNLEFEQAA 657
Query: 661 RLRDEAARLEKKL 673
LRDE RL + L
Sbjct: 658 ALRDEVKRLRELL 670
>gi|77957357|ref|ZP_00821415.1| COG0556: Helicase subunit of the DNA excision repair complex
[Yersinia bercovieri ATCC 43970]
Length = 670
Score = 706 bits (1821), Expect = 0.0, Method: Composition-based stats.
Identities = 375/673 (55%), Positives = 478/673 (71%), Gaps = 13/673 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
+KL S FKP GDQP+AIR+L +G+ G+ QTLLGVTGSGKTFTVANV+A +NRPT+VL+
Sbjct: 5 FKLHSEFKPAGDQPDAIRKLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 64
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLYGE K FFP+NAVEYFVSYYDYYQPEAY+P +DT+IEKD ++N IE++RL
Sbjct: 65 PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL R+DV+VV+SVS +YG+ +P+ + + ++ L G D+ +R L E Y+
Sbjct: 125 SATKALLE-RRDVIVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLSELQYSR 183
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N F+ G FRV+G+ +DIFPA D A RVE +D EVERLS FDP TG+ +
Sbjct: 184 NDQVFQRGTFRVRGEVIDIFPAES--DEWALRVELFDEEVERLSIFDPLTGQLQHEVPRF 241
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
+YP +VT +E++ +A+ +I V+L + L + K E +R+ +R +DLEM+ ELG
Sbjct: 242 TVYPKTHYVTPRERILQAMEEIKVELAERRKVLLDNNKLLEEQRIAQRTQFDLEMMNELG 301
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSGIENYSRY GR GE P L DY P D LL++DESHVTIPQI MY GDRSRKE L
Sbjct: 302 YCSGIENYSRYLSGRGPGEPPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKETL 361
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFRLP+ALDNRP+RF+EFEA P+T+Y+SATP YEL +S G I+EQ++RPTGLLDP
Sbjct: 362 VEYGFRLPSALDNRPMRFEEFEASAPQTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDP 421
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
+I+V+P A QVDDL+ EI ERVLVTTLTKRMAE+L+EYL HG Y+HSD+D
Sbjct: 422 LIEVRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTEYLTEHGARVRYLHSDID 481
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT GR
Sbjct: 482 TVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR+++G+ I Y D+IT SM+ + ET RRRAKQ AYNE GI PQ + K + G
Sbjct: 542 AARNLNGKAILYGDRITASMEKAISETERRRAKQQAYNEERGIIPQGLNKKIGDLLQLGQ 601
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKP--KLEALIASTKKQMLAAAKELDFLEAA 660
S AADP +Y+S P L+ I + +M A+ L+F +AA
Sbjct: 602 PSTRGKGK-------GRGGKAADP-NNYMSLPPKALDQKIRELEAKMYTYAQNLEFEQAA 653
Query: 661 RLRDEAARLEKKL 673
LRD+ +L ++
Sbjct: 654 ELRDQVHQLRQQF 666
>gi|77976765|ref|ZP_00832237.1| COG0556: Helicase subunit of the DNA excision repair complex
[Yersinia intermedia ATCC 29909]
Length = 670
Score = 705 bits (1820), Expect = 0.0, Method: Composition-based stats.
Identities = 374/672 (55%), Positives = 476/672 (70%), Gaps = 11/672 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
+KL S FKP GDQPEAIR+L +G+ G+ QTLLGVTGSGKTFT+ANV+A +NRPT+VL+
Sbjct: 5 FKLHSEFKPAGDQPEAIRKLEEGLENGLAHQTLLGVTGSGKTFTIANVIADLNRPTMVLA 64
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLYGE K FFP+NAVEYFVSYYDYYQPEAY+P +DT+IEKD ++N IE++RL
Sbjct: 65 PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL R+DV+VV+SVS +YG+ +P+ + + ++ L G D+ +R L E Y+
Sbjct: 125 SATKALLE-RRDVIVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLSELQYSR 183
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N F+ G FRV+G+ +DIFPA D A RVE +D EVERLS FDP TG+ +
Sbjct: 184 NDQVFQRGTFRVRGEVIDIFPAES--DEWALRVELFDEEVERLSIFDPLTGQLQHEVPRF 241
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
+YP +VT +E++ +A+ +I V+L + L K E +R+ +R +DLEM+ ELG
Sbjct: 242 TVYPKTHYVTPRERILQAMEEIKVELADRRQVLLANNKLLEEQRISQRTQFDLEMMNELG 301
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSGIENYSRY GR GE P L DY P D LLV+DESHVTIPQI MY GDRSRKE L
Sbjct: 302 YCSGIENYSRYLSGRGPGEAPPTLFDYLPADGLLVVDESHVTIPQIGGMYKGDRSRKETL 361
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFRLP+ALDNRP+RF+EFEAL P+T+Y+SATP YEL +S G I++Q++RPTGLLDP
Sbjct: 362 VEYGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGGDIIDQVVRPTGLLDP 421
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
+I+V+P A QVDDL+ EI ERVLVTTLTKRMAE+L+EYL HG Y+HSD+D
Sbjct: 422 LIEVRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTEYLGEHGARVRYLHSDID 481
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT GR
Sbjct: 482 TVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR+++G+ I Y D+IT SM+ + ET RRR KQ YNE GI PQ + K I G
Sbjct: 542 AARNLNGKAILYGDRITASMEKAIGETERRRVKQQTYNEERGIIPQGLNKKIGDILQLGQ 601
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPK-LEALIASTKKQMLAAAKELDFLEAAR 661
S+ G + ADP + PK L+ I + +M A+ L+F +AA
Sbjct: 602 PSSRGKGKGRGGKV-------ADPNNYHALPPKALDQKIRELESKMYTHAQNLEFEQAAE 654
Query: 662 LRDEAARLEKKL 673
LRD+ +L ++
Sbjct: 655 LRDQVHQLRQQF 666
>gi|114047410|ref|YP_737960.1| excinuclease ABC, B subunit [Shewanella sp. MR-7]
gi|113888852|gb|ABI42903.1| excinuclease ABC, B subunit [Shewanella sp. MR-7]
Length = 673
Score = 705 bits (1820), Expect = 0.0, Method: Composition-based stats.
Identities = 373/674 (55%), Positives = 483/674 (71%), Gaps = 12/674 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
++L S+F P GDQP AI +LV G+ G+ QTLLGVTGSGKTFT+ANV+A + RPT++++
Sbjct: 6 FQLESQFAPAGDQPTAIAKLVDGLESGLACQTLLGVTGSGKTFTIANVIAQLGRPTIIMA 65
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLYGE K FFP NAVEYFVSYYDYYQPEAY+P ++T+IEKD ++NA IE++RL
Sbjct: 66 PNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQMRL 125
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL RKDV++++SVS +YG+ +P+++ + ++ L G + ++ L E YT
Sbjct: 126 SATKALLE-RKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDTMGQRDILKRLSELQYTR 184
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N +E + G FRV+G+ +DIFPA G+ RVE +D E+ERLS FDP TG+ ++
Sbjct: 185 NDIELQRGTFRVRGEVIDIFPADSDRYGI--RVELFDDEIERLSEFDPLTGQIVKRIART 242
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
+YP +VT +E++ A I +L + +L + K EA+R++ERV YD+EM+ ELG
Sbjct: 243 TVYPKTHYVTPREKILEATESIKQELRERKQYLLDNNKLIEAQRIHERVQYDIEMMVELG 302
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSGIENYSRY GR GE P LLDY P D LL+IDESHVT+PQI AMY GDRSRK L
Sbjct: 303 YCSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKTTL 362
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFRLP+ALDNRPL+F+EFE L P+T+Y+SATP YEL +S+G IVEQ++RPTGLLDP
Sbjct: 363 VEYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPNPYELEKSDGEIVEQVVRPTGLLDP 422
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
++V+P QVDDL+ E+A+ + ERVLVTTLTKRM+E+L+EYL HG+ Y+HSD+D
Sbjct: 423 ELEVRPVNIQVDDLLSEVAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDID 482
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLV ILDADKEGFLRS RSL QT GR
Sbjct: 483 TVERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGR 542
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR+++G+VI YAD+IT SM M ET RRR KQ AYN HGI P+ +VK D
Sbjct: 543 AARNVNGKVILYADRITQSMAKAMGETERRREKQRAYNLEHGIVPKGVVKRIT------D 596
Query: 603 VSALQSDTESGAYIEESSM-VAADPLADYLS--KPKLEALIASTKKQMLAAAKELDFLEA 659
V + ES +SS+ A+P A +L I +KQM A+ L+F EA
Sbjct: 597 VMDVDDGRESEKGYRQSSLDKVAEPKAKRYQADAAQLSHDIDKLEKQMHEHARNLEFEEA 656
Query: 660 ARLRDEAARLEKKL 673
A LRDE RL + L
Sbjct: 657 AALRDEVKRLRELL 670
>gi|153800908|ref|ZP_01955494.1| excinuclease ABC subunit B [Vibrio cholerae MZO-3]
gi|124123499|gb|EAY42242.1| excinuclease ABC subunit B [Vibrio cholerae MZO-3]
Length = 676
Score = 705 bits (1820), Expect = 0.0, Method: Composition-based stats.
Identities = 368/673 (54%), Positives = 488/673 (72%), Gaps = 7/673 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
++L S ++P GDQP AI+QL++G+ G+ QTLLGVTGSGKTFT+ANV+A RPT++L+
Sbjct: 5 FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLYGE KAFFP NAVEYFVSYYDYYQPEAY+P TDT+IEKD ++NA IE++RL
Sbjct: 65 PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL RKD ++V+SVS +YG+ +P+++ + ++ L G ++ +R L E Y+
Sbjct: 125 SATKALLE-RKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSR 183
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGL-LSE 241
N + FE G FRV+G+ +DIFPA D A RVE +D EVE +S FDP TG L+
Sbjct: 184 NDMAFERGQFRVRGEVIDIFPAES--DQEAVRVEMFDDEVECISLFDPLTGVITSRDLAR 241
Query: 242 LKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIREL 301
IYP +VT +E++ A+ +I +L + +L + K E +R+ +R +D+EM+ EL
Sbjct: 242 FTIYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNEL 301
Query: 302 GYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKEN 361
G+CSGIENYSRY GR GE P L DY P D LL+IDESHVT+PQI AM+ GDRSRKE
Sbjct: 302 GFCSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKET 361
Query: 362 LVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLD 421
LVE+GFRLP+ALDNRPL+FDEFEAL P+T+++SATP++YEL +S G + EQ++RPTGLLD
Sbjct: 362 LVEFGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLD 421
Query: 422 PIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDV 481
PII+V+P A QVDDL+ E ER+LVTTLTKRMAE+L+EYL HG+ Y+HSD+
Sbjct: 422 PIIEVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDI 481
Query: 482 DTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 541
DT+ERV I+ DLR GV+D L+G+NLLREGLD+PEV+LVAILDADKEGFLRS RSL QT G
Sbjct: 482 DTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMG 541
Query: 542 RAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEG 601
RAAR+++G+ I YAD IT SM+ +DET RRR KQLAYNE GITPQ + ++ I G
Sbjct: 542 RAARNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELG 601
Query: 602 DVSALQSDTESGAYIEESSMVAADPLA-DYLSKPKLEALIASTKKQMLAAAKELDFLEAA 660
D++ +S + + + + VA + A L+ +LE I+ + M A+ L+F AA
Sbjct: 602 DIA--KSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAA 659
Query: 661 RLRDEAARLEKKL 673
+ RDE +L ++
Sbjct: 660 QKRDEIHQLRQQF 672
>gi|116188709|ref|ZP_01478476.1| hypothetical protein VchoM_02002356 [Vibrio cholerae MO10]
gi|121587374|ref|ZP_01677144.1| excinuclease ABC subunit B [Vibrio cholerae 2740-80]
gi|121728166|ref|ZP_01681201.1| excinuclease ABC subunit B [Vibrio cholerae V52]
gi|147673403|ref|YP_001216490.1| excinuclease ABC subunit B [Vibrio cholerae O395]
gi|153215064|ref|ZP_01949781.1| excinuclease ABC subunit B [Vibrio cholerae 1587]
gi|153819299|ref|ZP_01971966.1| excinuclease ABC subunit B [Vibrio cholerae NCTC 8457]
gi|153823436|ref|ZP_01976103.1| excinuclease ABC subunit B [Vibrio cholerae B33]
gi|153829535|ref|ZP_01982202.1| excinuclease ABC subunit B [Vibrio cholerae 623-39]
gi|121548377|gb|EAX58439.1| excinuclease ABC subunit B [Vibrio cholerae 2740-80]
gi|121629563|gb|EAX61986.1| excinuclease ABC subunit B [Vibrio cholerae V52]
gi|124114927|gb|EAY33747.1| excinuclease ABC subunit B [Vibrio cholerae 1587]
gi|125617733|gb|EAZ46288.1| excinuclease ABC subunit B [Vibrio cholerae MO10]
gi|126510159|gb|EAZ72753.1| excinuclease ABC subunit B [Vibrio cholerae NCTC 8457]
gi|126519045|gb|EAZ76268.1| excinuclease ABC subunit B [Vibrio cholerae B33]
gi|146315286|gb|ABQ19825.1| excinuclease ABC subunit B [Vibrio cholerae O395]
gi|148874995|gb|EDL73130.1| excinuclease ABC subunit B [Vibrio cholerae 623-39]
Length = 676
Score = 705 bits (1819), Expect = 0.0, Method: Composition-based stats.
Identities = 367/673 (54%), Positives = 488/673 (72%), Gaps = 7/673 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
++L S ++P GDQP AI+QL++G+ G+ QTLLGVTGSGKTFT+ANV+A RPT++L+
Sbjct: 5 FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLYGE KAFFP NAVEYFVSYYDYYQPEAY+P TDT+IEKD ++NA IE++RL
Sbjct: 65 PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL RKD ++V+SVS +YG+ +P+++ + ++ L G ++ +R L E Y+
Sbjct: 125 SATKALLE-RKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSR 183
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGL-LSE 241
N + FE G FRV+G+ +DIFPA D A RVE +D E+E +S FDP TG L+
Sbjct: 184 NDMAFERGQFRVRGEVIDIFPAES--DQEAVRVEMFDDEIECISLFDPLTGVITSRDLAR 241
Query: 242 LKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIREL 301
IYP +VT +E++ A+ +I +L + +L + K E +R+ +R +D+EM+ EL
Sbjct: 242 FTIYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNEL 301
Query: 302 GYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKEN 361
G+CSGIENYSRY GR GE P L DY P D LL+IDESHVT+PQI AM+ GDRSRKE
Sbjct: 302 GFCSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKET 361
Query: 362 LVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLD 421
LVE+GFRLP+ALDNRPL+FDEFEAL P+T+++SATP++YEL +S G + EQ++RPTGLLD
Sbjct: 362 LVEFGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLD 421
Query: 422 PIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDV 481
PII+V+P A QVDDL+ E ER+LVTTLTKRMAE+L+EYL HG+ Y+HSD+
Sbjct: 422 PIIEVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDI 481
Query: 482 DTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 541
DT+ERV I+ DLR GV+D L+G+NLLREGLD+PEV+LVAILDADKEGFLRS RSL QT G
Sbjct: 482 DTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMG 541
Query: 542 RAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEG 601
RAAR+++G+ I YAD IT SM+ +DET RRR KQLAYNE GITPQ + ++ I G
Sbjct: 542 RAARNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELG 601
Query: 602 DVSALQSDTESGAYIEESSMVAADPLA-DYLSKPKLEALIASTKKQMLAAAKELDFLEAA 660
D++ +S + + + + VA + A L+ +LE I+ + M A+ L+F AA
Sbjct: 602 DIA--KSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAA 659
Query: 661 RLRDEAARLEKKL 673
+ RDE +L ++
Sbjct: 660 QKRDEIHQLRQQF 672
>gi|116216789|ref|ZP_01482620.1| hypothetical protein VchoR_02001443 [Vibrio cholerae RC385]
gi|150419511|gb|EDN11838.1| excinuclease ABC subunit B [Vibrio cholerae RC385]
Length = 676
Score = 705 bits (1819), Expect = 0.0, Method: Composition-based stats.
Identities = 366/673 (54%), Positives = 488/673 (72%), Gaps = 7/673 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
++L S ++P GDQP AI+QL++G+ G+ QTLLGVTGSGKTFT+ANV+A RPT++L+
Sbjct: 5 FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLYGE KAFFP NAVEYFVSYYDYYQPEAY+P TDT+IEKD ++NA IE++RL
Sbjct: 65 PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL RKD ++V+SVS +YG+ +P+++ + ++ L G ++ +R L E Y+
Sbjct: 125 SATKALLE-RKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSR 183
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGL-LSE 241
N + FE G FRV+G+ +DIFPA D A RVE +D E+E +S FDP TG L+
Sbjct: 184 NDMAFERGQFRVRGEVIDIFPAES--DQEAVRVEMFDDEIECISLFDPLTGVITSRDLAR 241
Query: 242 LKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIREL 301
IYP +VT +E++ A+ +I +L + +L + K E +R+ +R +D+EM+ EL
Sbjct: 242 FTIYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNEL 301
Query: 302 GYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKEN 361
G+CSGIENYSRY GR GE P L DY P D LL+IDESHVT+PQI AM+ GDRSRKE
Sbjct: 302 GFCSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKET 361
Query: 362 LVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLD 421
LVE+GFRLP+ALDNRPL+FDEFEAL P+T+++SATP++YEL +S G + EQ++RPTGLLD
Sbjct: 362 LVEFGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLD 421
Query: 422 PIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDV 481
PII+V+P A QVDDL+ E ER+LVTTLTKRMAE+L+EYL HG+ Y+HSD+
Sbjct: 422 PIIEVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDI 481
Query: 482 DTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 541
DT+ERV I+ DLR G++D L+G+NLLREGLD+PEV+LVAILDADKEGFLRS RSL QT G
Sbjct: 482 DTVERVEIIRDLRLGIFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMG 541
Query: 542 RAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEG 601
RAAR+++G+ I YAD IT SM+ +DET RRR KQLAYNE GITPQ + ++ I G
Sbjct: 542 RAARNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELG 601
Query: 602 DVSALQSDTESGAYIEESSMVAADPLA-DYLSKPKLEALIASTKKQMLAAAKELDFLEAA 660
D++ +S + + + + VA + A L+ +LE I+ + M A+ L+F AA
Sbjct: 602 DIA--KSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAA 659
Query: 661 RLRDEAARLEKKL 673
+ RDE +L ++
Sbjct: 660 QKRDEIHQLRQQF 672
>gi|150422351|gb|EDN14312.1| excinuclease ABC subunit B [Vibrio cholerae AM-19226]
Length = 676
Score = 705 bits (1819), Expect = 0.0, Method: Composition-based stats.
Identities = 368/673 (54%), Positives = 488/673 (72%), Gaps = 7/673 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
++L S ++P GDQP AI+QL++G+ G+ QTLLGVTGSGKTFT+ANV+A RPT++L+
Sbjct: 5 FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLYGE KAFFP NAVEYFVSYYDYYQPEAY+P TDT+IEKD ++NA IE++RL
Sbjct: 65 PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL RKD ++V+SVS +YG+ +P+++ + ++ L G ++ +R L E Y+
Sbjct: 125 SATKALLE-RKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSR 183
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGL-LSE 241
N + FE G FRV+G+ +DIFPA D A RVE +D EVE +S FDP TG L+
Sbjct: 184 NDMAFERGQFRVRGEVIDIFPAES--DQEAVRVEMFDDEVECISLFDPLTGVITSRDLAR 241
Query: 242 LKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIREL 301
IYP +VT +E++ A+ +I +L + +L + K E +R+ +R +D+EM+ EL
Sbjct: 242 FTIYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNEL 301
Query: 302 GYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKEN 361
G+CSGIENYSRY GR GE P L DY P D LL+IDESHVT+PQI AM+ GDRSRKE
Sbjct: 302 GFCSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKET 361
Query: 362 LVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLD 421
LVE+GFRLP+ALDNRPL+FDEFEAL P+T+++SATP++YEL +S G + EQ++RPTGLLD
Sbjct: 362 LVEFGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLD 421
Query: 422 PIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDV 481
PII+V+P A QVDDL+ E ER+LVTTLTKRMAE+L+EYL HG+ Y+HSD+
Sbjct: 422 PIIEVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGLKVRYLHSDI 481
Query: 482 DTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 541
DT+ERV I+ DLR GV+D L+G+NLLREGLD+PEV+LVAILDADKEGFLRS RSL QT G
Sbjct: 482 DTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMG 541
Query: 542 RAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEG 601
RAAR+++G+ I YAD IT SM+ +DET RRR KQLAYNE GITPQ + ++ I G
Sbjct: 542 RAARNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELG 601
Query: 602 DVSALQSDTESGAYIEESSMVAADPLA-DYLSKPKLEALIASTKKQMLAAAKELDFLEAA 660
D++ +S + + + + VA + A L+ +LE I+ + M A+ L+F AA
Sbjct: 602 DIA--KSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAA 659
Query: 661 RLRDEAARLEKKL 673
+ RDE +L ++
Sbjct: 660 QKRDEIHQLRQQF 672
>gi|156934731|ref|YP_001438647.1| hypothetical protein ESA_02566 [Enterobacter sakazakii ATCC
BAA-894]
gi|156532985|gb|ABU77811.1| hypothetical protein ESA_02566 [Enterobacter sakazakii ATCC
BAA-894]
Length = 691
Score = 705 bits (1819), Expect = 0.0, Method: Composition-based stats.
Identities = 380/670 (56%), Positives = 484/670 (72%), Gaps = 8/670 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
+KL S FKP+GDQPEAIR++ +G+ +G+ QTLLGVTGSGKTFT+ANV+A + RPT+VL+
Sbjct: 23 FKLNSAFKPSGDQPEAIRRIKEGLEDGLAHQTLLGVTGSGKTFTMANVIADLQRPTMVLA 82
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLYGE K FFPENAVEYFVSYYDYYQPEAY+P +DT+IEKD ++N IE++RL
Sbjct: 83 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 142
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL R+DV+VV+SVS +YG+ +P+ + + ++ L G D+ +R L E YT
Sbjct: 143 SATKALLE-RRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRAILRRLTELQYTR 201
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N F+ G FRV+G+ +DIFPA D +A RVE +D EVERLS FDP TG ++
Sbjct: 202 NDQAFQRGTFRVRGEVIDIFPAES--DELALRVELFDEEVERLSLFDPLTGTVDSIIQRF 259
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
+YP +VT +E++ +A+ +I V+L + L E K E +RL +R +DLEM+ ELG
Sbjct: 260 TVYPKTHYVTPRERIVQAMEEIKVELAERRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 319
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSGIENYSRY GR GE P L DY P D LLV+DESHVTIPQI MY GDR+RKE L
Sbjct: 320 YCSGIENYSRYLSGRGPGEAPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL 379
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFRLP+ALDNRPL+F+EFEAL P+T+Y+SATP +YEL +S G I++Q++RPTGLLDP
Sbjct: 380 VEYGFRLPSALDNRPLKFEEFEALAPQTVYVSATPGNYELEKSGGEIIDQVVRPTGLLDP 439
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
II+V+P A QVDDL+ EI + + ERVLVTTLTKRMAE+L+EYL HG Y+HSD+D
Sbjct: 440 IIEVRPVATQVDDLLSEIRKRVAINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDID 499
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ER+ I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT GR
Sbjct: 500 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 559
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR+++G+ I Y DKIT SM + ET RRR KQ AYNE HGI PQ + K I G+
Sbjct: 560 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQAYNEEHGIVPQGLNKKVVDILALGE 619
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPK-LEALIASTKKQMLAAAKELDFLEAAR 661
A G + VA A+ PK L+ I + QM+ A+ L+F EAA+
Sbjct: 620 NIAKTKPKGRG----KGRTVADAEAAELALTPKALQQKIHQLEAQMVQHAQNLEFEEAAQ 675
Query: 662 LRDEAARLEK 671
LRD+ +L +
Sbjct: 676 LRDKLHQLRE 685
>gi|149377056|ref|ZP_01894807.1| excinuclease ABC subunit B [Marinobacter algicola DG893]
gi|149358714|gb|EDM47185.1| excinuclease ABC subunit B [Marinobacter algicola DG893]
Length = 687
Score = 704 bits (1818), Expect = 0.0, Method: Composition-based stats.
Identities = 368/671 (54%), Positives = 486/671 (72%), Gaps = 6/671 (0%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
+K+ S F+P GDQP+AI LV GI+ G+ QTLLGVTGSGKTFT+ANV+ V RPT++++
Sbjct: 15 FKVDSPFQPAGDQPKAIDGLVDGIHSGLAHQTLLGVTGSGKTFTIANVIQQVQRPTIIMA 74
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
HNKTLAAQLYGEF+ FFP+NAVEYFVSYYDYYQPEAY+P +DT+IEKD +IN IE++RL
Sbjct: 75 HNKTLAAQLYGEFREFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEHIEQMRL 134
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL R D ++V++VS +YG+ +P+++ + ++ L G + D+ H +R L E YT
Sbjct: 135 SATKALLE-RPDAIIVATVSSIYGLGDPQSYLKMMLHLDRGDQIDQRHILRRLAELQYTR 193
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N VEF N+RV+GD +D+FPA + + R+E +D EVE LS FDP TG + +
Sbjct: 194 NDVEFHRANYRVRGDVIDVFPAESEKEAI--RIELFDDEVENLSYFDPLTGEVLRRVPRV 251
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
IYP + +VT +++V AV +I V+L ++ L++ + EA+RL ER YD+EM+ ELG
Sbjct: 252 TIYPKSHYVTPRQKVLDAVERIKVELDERLKQLRDNNRLVEAQRLEERTRYDIEMMLELG 311
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YC+GIENYSRY GR GE P L DY P + +LV+DESHVTIPQI AMY GDRSRKE L
Sbjct: 312 YCNGIENYSRYLSGRQPGEAPPTLFDYLPANAMLVVDESHVTIPQIGAMYKGDRSRKETL 371
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFRLP+ALDNRP+RFDE+E + P+ L++SATP +YE S G +VEQ++RPTGLLDP
Sbjct: 372 VEYGFRLPSALDNRPMRFDEWERIAPQMLFVSATPGNYEAEHS-GQVVEQVVRPTGLLDP 430
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
I+V+P + QVDDL+ EI + ER+LVTTLTKRMAE+L+++L+ H I Y+HSD+D
Sbjct: 431 EIEVRPASTQVDDLLSEIRLRTDVNERILVTTLTKRMAEDLTDFLMEHDIRVRYLHSDID 490
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ERV I+ DLR+G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT GR
Sbjct: 491 TVERVEIIRDLRRGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 550
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR++HG+ I Y D+IT SMQ +DET RRRAKQ A+NE HGITPQ + K A I
Sbjct: 551 AARNLHGKAILYGDRITGSMQRAIDETGRRRAKQAAHNEEHGITPQGLNKKIADIMEGAG 610
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPKLEAL--IASTKKQMLAAAKELDFLEAA 660
+ ++ E+++ A A ++ E L I + M AA +LDF AA
Sbjct: 611 GGGGRGRRKAERPGEKAAEEAEKYRAKAGNRSPEEVLKEITRLEDDMYKAAADLDFETAA 670
Query: 661 RLRDEAARLEK 671
RLRD+ + L++
Sbjct: 671 RLRDDISELKE 681
>gi|116513719|ref|YP_812625.1| Helicase subunit of the DNA excision repair complex [Lactobacillus
delbrueckii subsp. bulgaricus ATCC BAA-365]
gi|116093034|gb|ABJ58187.1| Helicase subunit of the DNA excision repair complex [Lactobacillus
delbrueckii subsp. bulgaricus ATCC BAA-365]
Length = 680
Score = 704 bits (1818), Expect = 0.0, Method: Composition-based stats.
Identities = 363/673 (53%), Positives = 491/673 (72%), Gaps = 14/673 (2%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
++L S +KP GDQ +AI QL G G Q L G TG+GKT+T+ANV+A +N+PTLV++
Sbjct: 10 FELVSPYKPAGDQQQAIDQLTAGFQAGDKEQILKGATGTGKTYTMANVIAKMNKPTLVIT 69
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
HNKTL QLY EFK FFP NAVEYFVSYYDYYQPEAY+P +DTYIEKD +IN EI++LR
Sbjct: 70 HNKTLVGQLYNEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDQLRH 129
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT++L+S R DV+VV+SVSC+YG+ +P + V++++TGQ +R+ +R LV Y
Sbjct: 130 AATSALMS-RNDVIVVASVSCIYGLGDPREYEASVLNVYTGQEYERNTLLRDLVNIQYDR 188
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N ++ + G FRV+GD V++FPA GY AYR+EF+ E++R+ DP TG +G+ +
Sbjct: 189 NDIDLQRGRFRVRGDVVEVFPA--GYSDRAYRIEFFGDEIDRIVEVDPLTGEVHGVRDSI 246
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
++PA F+T +Q+ A+ +I ++ QV ++ GK EA+R+ +R TYDLEM+RE+G
Sbjct: 247 SLFPATHFMTNDDQLAGAIDRIKAEMDDQVKKFEKEGKLLEAERIKQRTTYDLEMLREVG 306
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
Y +GIENYSR + R AGE P+ LLD+FP+D L++IDESH T+P+IRAMY GDR+RK+ L
Sbjct: 307 YTNGIENYSRQMENRKAGEPPYTLLDFFPKDSLILIDESHATMPEIRAMYNGDRNRKQTL 366
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
++YGFRLP+ALDNRPL+ +EFE + +Y+SATP DYELNR+ IVEQ+IRPTGLLDP
Sbjct: 367 IDYGFRLPSALDNRPLKLEEFEQHVNQIMYVSATPGDYELNRTSR-IVEQVIRPTGLLDP 425
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
I+V+P Q+DDL+ EI IE++ERV VTTLTK+MAE+L++YL GI Y+HSD+
Sbjct: 426 KIEVRPIEGQIDDLVAEINLRIERRERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIK 485
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
TLER++I+ DLR G +D LIG+NLLREG+D+PEVSLVAILDADKEGFLR++R L QT GR
Sbjct: 486 TLERMQIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLIQTMGR 545
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR+ +G VI YAD+ITDSM++ +DET RRRA Q+ YNE HGI P+ I+K +
Sbjct: 546 AARNANGEVIMYADRITDSMKMAIDETNRRRAIQMKYNEEHGIVPKTIIKPVRDM----- 600
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARL 662
+S +++D E+ E S AD D L+ + + +IA+ K+QM AAK LDF AA L
Sbjct: 601 ISVVKADKEA-----EKSDSFADLNFDELTAKQKKQMIANLKEQMQDAAKRLDFESAANL 655
Query: 663 RDEAARLEKKLEQ 675
RD LE + +
Sbjct: 656 RDAIIELEGSVRK 668
>gi|104773722|ref|YP_618702.1| Excinuclease ABC, subunit B [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|16124250|gb|AAL14788.1| UvrB [Lactobacillus delbrueckii]
gi|103422803|emb|CAI97444.1| Excinuclease ABC, subunit B [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
Length = 680
Score = 704 bits (1817), Expect = 0.0, Method: Composition-based stats.
Identities = 363/673 (53%), Positives = 491/673 (72%), Gaps = 14/673 (2%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
++L S +KP GDQ +AI QL G G Q L G TG+GKT+T+ANV+A +N+PTLV++
Sbjct: 10 FELVSPYKPAGDQQQAIDQLTAGFQAGDKEQILKGATGTGKTYTMANVIAKMNKPTLVIT 69
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
HNKTL QLY EFK FFP NAVEYFVSYYDYYQPEAY+P +DTYIEKD +IN EI++LR
Sbjct: 70 HNKTLVGQLYNEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDQLRH 129
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT++L+S R DV+VV+SVSC+YG+ +P + V++++TGQ +R+ +R LV Y
Sbjct: 130 AATSALMS-RNDVIVVASVSCIYGLGDPREYEASVLNVYTGQEYERNTLLRDLVNIQYDR 188
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N ++ + G FRV+GD V++FPA GY AYR+EF+ E++R+ DP TG +G+ +
Sbjct: 189 NDIDLQRGRFRVRGDVVEVFPA--GYSDRAYRIEFFGDEIDRIVEVDPLTGEVHGVRDSI 246
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
++PA F+T +Q+ A+ +I ++ QV ++ GK EA+R+ +R TYDLEM+RE+G
Sbjct: 247 SLFPATHFMTNDDQLAGAIDRIKAEMDDQVKKFEKEGKLLEAERIKQRTTYDLEMLREVG 306
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
Y +GIENYSR + R AGE P+ LLD+FP+D L++IDESH T+P+IRAMY GDR+RK+ L
Sbjct: 307 YTNGIENYSRQMENRKAGEPPYTLLDFFPKDSLILIDESHATMPEIRAMYNGDRNRKQTL 366
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
++YGFRLP+ALDNRPL+ +EFE + +Y+SATP DYELNR+ IVEQ+IRPTGLLDP
Sbjct: 367 IDYGFRLPSALDNRPLKLEEFEQHVNQIMYVSATPGDYELNRTSR-IVEQVIRPTGLLDP 425
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
I+V+P Q+DDL+ EI IE++ERV VTTLTK+MAE+L++YL GI Y+HSD+
Sbjct: 426 KIEVRPIEGQIDDLVAEINLRIERRERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIK 485
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
TLER++I+ DLR G +D LIG+NLLREG+D+PEVSLVAILDADKEGFLR++R L QT GR
Sbjct: 486 TLERMQIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLIQTMGR 545
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR+ +G VI YAD+ITDSM++ +DET RRRA Q+ YNE HGI P+ I+K +
Sbjct: 546 AARNANGEVIMYADRITDSMKMAIDETNRRRAIQMKYNEEHGIVPKTIIKPVRDM----- 600
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARL 662
+S +++D E+ E S AD D L+ + + +IA+ K+QM AAK LDF AA L
Sbjct: 601 ISVVKADKEA-----EKSDSFADLNFDELTAKQKKQMIANLKEQMQDAAKRLDFESAANL 655
Query: 663 RDEAARLEKKLEQ 675
RD LE + +
Sbjct: 656 RDAIIELEGSVRK 668
>gi|76787746|ref|YP_330102.1| excinuclease ABC subunit B [Streptococcus agalactiae A909]
gi|77411086|ref|ZP_00787440.1| excinuclease ABC, B subunit [Streptococcus agalactiae CJB111]
gi|90111055|sp|Q3K051|UVRB_STRA1 UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
gi|76562803|gb|ABA45387.1| UvrABC system, B protein [Streptococcus agalactiae A909]
gi|77162909|gb|EAO73866.1| excinuclease ABC, B subunit [Streptococcus agalactiae CJB111]
Length = 663
Score = 704 bits (1817), Expect = 0.0, Method: Composition-based stats.
Identities = 365/670 (54%), Positives = 485/670 (72%), Gaps = 21/670 (3%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
+KL S++ P+GDQP+AI LV I G AQ L G TG+GKT+T++ V+A VN+PTLV++
Sbjct: 10 FKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILKGATGTGKTYTMSQVIAQVNKPTLVIA 69
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
HNKTLA QLYGEFK FFP+NAVEYFVSYYDYYQPEAY+P +DTYIEKD ++N EI+KLR
Sbjct: 70 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT+SLL R DV+VV+SVSC+YG+ +P+ +++ V+SL GQ RD + LV+ +
Sbjct: 130 SATSSLLE-RNDVIVVASVSCIYGLGSPKEYADSVVSLRPGQEISRDQLLNNLVDIQFER 188
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N ++F+ G FRV+GD V++FPA D A+R+EF+ E++R+ + TGR G + L
Sbjct: 189 NDIDFQRGKFRVRGDVVEVFPASR--DEHAFRIEFFGDEIDRIREIESLTGRVLGEVEHL 246
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
I+PA F+T E ++ A+ KI ++ QV+ ++ GK EA+R+ +R YD+EM+RE+G
Sbjct: 247 AIFPATHFMTNDEHMEEAISKIQAEMENQVELFEKEGKLIEAQRIRQRTEYDIEMLREMG 306
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
Y +G+ENYSR+ DGR GE PF LLD+FPEDFL++IDESH+T+ QI+ MY GDRSRKE L
Sbjct: 307 YTNGVENYSRHMDGRSEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKEML 366
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
V YGFRLP+ALDNRPLR +EFE+ + +Y+SATP DYE+ +++ +VEQ+IRPTGLLDP
Sbjct: 367 VNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMGQTD-TVVEQIIRPTGLLDP 425
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
++V+P+ Q+DDL+ EI EK ER +TTLTKRMAE+L++YL G+ Y+HSD+
Sbjct: 426 EVEVRPSMGQMDDLLGEINLRTEKGERTFITTLTKRMAEDLTDYLKEMGVKVKYMHSDIK 485
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
TLER I+ DLR GV+D LIG+NLLREG+D+PEVSLVAILDADKEGFLR+ R L QT GR
Sbjct: 486 TLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGR 545
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR+ +G VI YADKITDSMQ MDETARRR Q+ YNE HGI PQ I K D
Sbjct: 546 AARNSNGHVIMYADKITDSMQRAMDETARRRRLQMDYNEKHGIVPQTIKKEIR------D 599
Query: 603 VSALQSDTESGAYIEESSMVAADPLADY--LSKPKLEALIASTKKQMLAAAKELDFLEAA 660
+ A+ +S + + DY LSK + +A I + +KQM AA+ LDF AA
Sbjct: 600 LIAITKSNDSD---------KPEKVVDYSSLSKKERQAEIKALQKQMQEAAELLDFELAA 650
Query: 661 RLRDEAARLE 670
++RD +L+
Sbjct: 651 QIRDVILKLK 660
>gi|116494463|ref|YP_806197.1| Helicase subunit of the DNA excision repair complex [Lactobacillus
casei ATCC 334]
gi|116104613|gb|ABJ69755.1| Helicase subunit of the DNA excision repair complex [Lactobacillus
casei ATCC 334]
Length = 671
Score = 704 bits (1817), Expect = 0.0, Method: Composition-based stats.
Identities = 365/672 (54%), Positives = 482/672 (71%), Gaps = 12/672 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
+ L S ++P GDQP+AI +L +G EG Q LLG TG+GKTFT++N++A +N+PTL+LS
Sbjct: 10 FDLVSPYQPAGDQPQAIAKLTKGFEEGKKEQILLGATGTGKTFTMSNIIANLNKPTLILS 69
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
HNKTLA QLYGEFK FFP NAVEYFVSYYDYYQPEAY+P TDTYIEKD AIN EI+KLR
Sbjct: 70 HNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKLRH 129
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT++LL R DV+VV+SVS ++G+ +P + V+SL TG DR+ +R LV+ +
Sbjct: 130 SATSALLE-RNDVIVVASVSSIFGLGDPHEYKNHVLSLRTGMTIDRNTLLRQLVDIQFDR 188
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N ++F+ G FRV+GD V+IFPA D A RVEF+ E++R++ D TG G +
Sbjct: 189 NDIDFQRGRFRVRGDVVEIFPASR--DDHAIRVEFFGDEIDRITEVDALTGEVIGTRDHV 246
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
I+PA F+T+ EQ+ RA+ I +L AQ+ L+ K EA+RL +R YD+EM+RE+G
Sbjct: 247 AIFPATHFMTSDEQMQRAIKSIAAELEAQLKVLRSENKLLEAQRLEQRTNYDIEMMREMG 306
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
+ SGIENYSR+ DGR GE P+ LLD+FP+DF +++DESHVT+PQIR MY GDR+RK+ L
Sbjct: 307 FTSGIENYSRHMDGRKPGEPPYTLLDFFPKDFNIMVDESHVTMPQIRGMYNGDRARKQML 366
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNR-SEGVIVEQLIRPTGLLD 421
V YGFRLP+ALDNRPL+ +EFE R LY+SATP YEL+R + I EQ+IRPTGLLD
Sbjct: 367 VNYGFRLPSALDNRPLKINEFEQHVHRILYVSATPGPYELDRVPKDDIAEQIIRPTGLLD 426
Query: 422 PIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDV 481
P I+V+P Q+DDL+ EI + ++ ERV +TTLTK+MAE+L++YL GI Y+HSD+
Sbjct: 427 PKIEVRPVMGQIDDLVGEINKRVDAHERVFITTLTKKMAEDLTDYLKDMGIKVRYLHSDI 486
Query: 482 DTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 541
TLER +I+ DLR G +D LIG+NLLREG+D+PEVSL+AILDADKEGFLR+ RSL QT G
Sbjct: 487 KTLERTQIIRDLRLGKFDVLIGINLLREGIDVPEVSLIAILDADKEGFLRAERSLIQTIG 546
Query: 542 RAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEG 601
RA+R+ HG+VI YADK+TDSM+ +DET RRR Q +NE H ITP+ I+K A
Sbjct: 547 RASRNEHGKVIMYADKVTDSMKAAIDETQRRRTIQEKFNEEHHITPKTIIKPIRA----- 601
Query: 602 DVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAAR 661
A+ S +S E+ A+ + +SK + L+A+ + QM AAAK+LDF +AA
Sbjct: 602 ---AISSYEQSDDDKAEAKKTFAEVDYEDMSKADKKELVANLRSQMQAAAKKLDFEQAAS 658
Query: 662 LRDEAARLEKKL 673
LRD L+ +
Sbjct: 659 LRDTILELQADM 670
>gi|42518788|ref|NP_964718.1| excinuclease ABC subunit B [Lactobacillus johnsonii NCC 533]
gi|81832263|sp|Q74K90|UVRB_LACJO UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
gi|41583074|gb|AAS08684.1| excinuclease ABC subunit B [Lactobacillus johnsonii NCC 533]
Length = 671
Score = 704 bits (1817), Expect = 0.0, Method: Composition-based stats.
Identities = 362/673 (53%), Positives = 492/673 (73%), Gaps = 14/673 (2%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
++L S+F+P GDQ +AI++L G +G AQ L G TG+GKTFT+ANV+A +N+PTLV+S
Sbjct: 10 FELVSKFQPAGDQEQAIKKLTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVIS 69
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
HNKTL QLYGEFK FFP+NAV+YFVSYYDYYQPEAY+P +DTYIEKD +IN EI++LR
Sbjct: 70 HNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDQLRH 129
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
+ T+ L+S R DV+VV+SVSC+YG+ +P ++ V+SL GQ RD +R LV Y
Sbjct: 130 KTTSDLMS-RNDVIVVASVSCIYGLGDPREYAASVVSLSEGQEISRDVLLRDLVNIQYDR 188
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N ++F+ G FRV+GD V+IFPA GY A+RVEF+ E++R+ D TG G ++
Sbjct: 189 NDIDFQRGRFRVRGDVVEIFPA--GYSDHAFRVEFFGDEIDRIVEVDSLTGEVIGEREQV 246
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
I+PA FVT ++ ++RA+ I ++ QV + GK EA+R+ +R TYD+EM+ E+G
Sbjct: 247 SIFPATHFVTNEQIMERALASIKDEMNIQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVG 306
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
Y +GIENYSR+ +GR AG+ P LLD+FP+DFL++IDESH T+P+++AMY GDR+RK+ L
Sbjct: 307 YTNGIENYSRHMEGRKAGQPPHTLLDFFPDDFLILIDESHATMPELKAMYNGDRARKQTL 366
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
++YGFRLP+ALDNRPL+ +EFE + +Y+SATP DYELN+++ VEQ+IRPTGLLDP
Sbjct: 367 IDYGFRLPSALDNRPLKLEEFEKHVNQIMYVSATPGDYELNQTDHK-VEQIIRPTGLLDP 425
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
I+V+P Q+DDL+ E+ + IE+ ERV VTTLTK+MAE+L++YL GI Y+HSD+
Sbjct: 426 EIEVRPIKGQIDDLVGEVNKRIERNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIK 485
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
TLER+ I+ DLR G +D LIG+NLLREG+D+PEVSLVAILDADKEGFLRS R L QT GR
Sbjct: 486 TLERLEIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQTIGR 545
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR+ +G+VI YAD ITDSM+ +D T RRR+ Q+ +N+ HGITP+ IVK D
Sbjct: 546 AARNSNGKVIMYADSITDSMREAIDATERRRSLQMKFNKEHGITPKTIVKPIR------D 599
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARL 662
V ++ D+E +E+ AD D L+K + + +I + QM AAK+LDF EAA L
Sbjct: 600 VISITKDSED----KENKESFADLNFDELTKKQKQNMIKTLTAQMQEAAKKLDFEEAANL 655
Query: 663 RDEAARLEKKLEQ 675
RD L+K++ +
Sbjct: 656 RDAIMDLKKQVHE 668
>gi|52082051|ref|YP_080842.1| excinuclease ABC subunit B [Bacillus licheniformis ATCC 14580]
gi|52787440|ref|YP_093269.1| excinuclease ABC subunit B [Bacillus licheniformis ATCC 14580]
gi|81825174|sp|Q65ED8|UVRB_BACLD UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
gi|52005262|gb|AAU25204.1| excinuclease ABC (subunit B) [Bacillus licheniformis ATCC 14580]
gi|52349942|gb|AAU42576.1| UvrB [Bacillus licheniformis DSM 13]
gi|113927091|emb|CAK18196.1| excinuclease ABC, subunit B [Bacillus licheniformis]
gi|113927100|emb|CAK18204.1| excinuclease ABC, subunit B [Bacillus licheniformis]
Length = 661
Score = 704 bits (1816), Expect = 0.0, Method: Composition-based stats.
Identities = 373/662 (56%), Positives = 485/662 (73%), Gaps = 14/662 (2%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
++L S ++P GDQP+AI QLV+GINEG QTLLG TG+GKTFT++NV+ VN+PTLV++
Sbjct: 5 FELVSNYQPQGDQPKAIDQLVKGINEGRKHQTLLGATGTGKTFTMSNVIKEVNKPTLVIA 64
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
HNKTLA QLY EFK FFP NAVEYFVSYYDYYQPEAY+P TDT+IEKD +IN EI+KLR
Sbjct: 65 HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT++L RKDV++V+SVSC+YG+ +PE + E V+SL T +R+ +R LV+ Y
Sbjct: 125 SATSALFE-RKDVIIVASVSCIYGLGSPEEYREMVLSLRTEMEIERNELLRKLVDIQYAR 183
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N ++F+ G FRV+GD V+IFPA D RVEF+ E+ER+ D TG G +
Sbjct: 184 NDIDFQRGTFRVRGDVVEIFPASR--DEHCVRVEFFGDEIERIREVDALTGEILGEREHV 241
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
I+PA+ FVT +E++ +A+ I+ +L ++ L+E GK EA+RL +R YDLEM+RE+G
Sbjct: 242 AIFPASHFVTREEKMKKAIINIEEELEERLKALREEGKLLEAQRLEQRTRYDLEMMREMG 301
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
+CSGIENYSR+ R AG P+ LLDYFP+DFL+VIDESHVTIPQIR MY GD++RK+ L
Sbjct: 302 FCSGIENYSRHLTLRPAGSTPYTLLDYFPDDFLMVIDESHVTIPQIRGMYNGDQARKQVL 361
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
V++GFRLP+ALDNRPLRF+EFE +Y+SATP YEL + +VEQ+IRPTGLLDP
Sbjct: 362 VDHGFRLPSALDNRPLRFEEFEKHIHNIVYVSATPGPYELEHTPE-MVEQIIRPTGLLDP 420
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
II+V+P Q+DDL+ EI + IE+ ERVLVTTLTK+M+E+L++YL GI Y+HS++
Sbjct: 421 IIEVRPIEGQIDDLIGEIQQRIERNERVLVTTLTKKMSEDLTDYLKEIGIKVTYLHSEIK 480
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
TLER+ I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT GR
Sbjct: 481 TLERIEIIRDLRLGKHDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGR 540
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR+ GRVI YADKIT+SM++ ++ET RRR +Q AYNE HGITP+ I K +
Sbjct: 541 AARNAEGRVIMYADKITNSMEIAINETKRRREQQEAYNEKHGITPKTINKKIRDV----- 595
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARL 662
+ A + + +E V +P ++K + E +IA + M AAK LDF AA L
Sbjct: 596 IRATHAAED-----QEEYQVKEEPKLSKMTKKEREKVIAQMESDMKEAAKALDFERAAEL 650
Query: 663 RD 664
RD
Sbjct: 651 RD 652
>gi|53729175|ref|ZP_00134015.2| COG0556: Helicase subunit of the DNA excision repair complex
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|126208147|ref|YP_001053372.1| UvrABC system protein B [Actinobacillus pleuropneumoniae L20]
gi|126096939|gb|ABN73767.1| UvrABC system protein B [Actinobacillus pleuropneumoniae L20]
Length = 673
Score = 704 bits (1816), Expect = 0.0, Method: Composition-based stats.
Identities = 363/671 (54%), Positives = 482/671 (71%), Gaps = 8/671 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
+ L S FKP+GDQP AI +L +G+N+G+ QTLLGVTGSGKTFT+ANV+A +NRP ++L+
Sbjct: 8 FILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 67
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLY E KAFFPENAVEYFVSYYDYYQPEAY+P +DT+IEKD +IN +IE++RL
Sbjct: 68 PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQIEQMRL 127
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT S L R+D +VV+SVS +YG+ + +A+ + ++ L G D+ + L E YT
Sbjct: 128 SATKSFLE-RRDTIVVASVSAIYGLGDVDAYMQMMLHLQLGAIIDQREILARLAELQYTR 186
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N F+ FRV+G+ +DIFPA D +A RVE +D E+E LS FDP TG G +
Sbjct: 187 NDQAFQRSTFRVRGEVIDIFPAES--DEIALRVELFDDEIESLSLFDPLTGHSLGKVPRY 244
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
IYP +VT +E++ A+ +I +L + ++ + K E +R+ +R +D+EM+ ELG
Sbjct: 245 TIYPKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMNELG 304
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSGIENYSRY GR GE P L DY P D LL+IDESHVT+PQI MY GDR+RKE L
Sbjct: 305 YCSGIENYSRYLSGRKEGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARKETL 364
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
V+YGFRLP+ALDNRPLRF+EFE L P+T+Y+SATP +YEL +S G +V+Q++RPTGLLDP
Sbjct: 365 VQYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGNYELEKSNGDVVDQVVRPTGLLDP 424
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
II+V+P A QVDD++ EI + + ERVL+TTLTK+MAE+L++YL HG+ Y+HSD+D
Sbjct: 425 IIEVRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLHSDID 484
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ERV I+ DLR G++D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT GR
Sbjct: 485 TVERVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 544
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR+++G+ I Y D+IT+SMQ + ET RRR KQ YNE HGITPQ + K + G
Sbjct: 545 AARNLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGITPQALNKKVGELLDIGQ 604
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARL 662
+ ++ +EE S P S+ +LE + ++QM AK+L+F +AA +
Sbjct: 605 TDKPKRGKQA-VKVEEKSANTYKP----KSRKELEKELKQLEQQMRDFAKDLEFEKAAAV 659
Query: 663 RDEAARLEKKL 673
RD+ +L+ L
Sbjct: 660 RDKIGQLKAVL 670
>gi|87122161|ref|ZP_01078044.1| excinuclease ABC, B subunit [Marinomonas sp. MED121]
gi|86162481|gb|EAQ63763.1| excinuclease ABC, B subunit [Marinomonas sp. MED121]
Length = 676
Score = 704 bits (1816), Expect = 0.0, Method: Composition-based stats.
Identities = 370/683 (54%), Positives = 489/683 (71%), Gaps = 21/683 (3%)
Query: 2 DYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVL 61
++++ S+F P GDQP+AI +L QGI G+ QTLLGVTGSGKTFT+ANVVA RPT+++
Sbjct: 4 EFEVVSQFSPAGDQPKAIEKLTQGIEAGLAHQTLLGVTGSGKTFTIANVVAKAKRPTIIM 63
Query: 62 SHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLR 121
+HNKTLAAQLYGEFK FFP NAVEYFVSYYDYYQPEAY+ +DT+IEKD ++N IE++R
Sbjct: 64 AHNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVAASDTFIEKDASVNEHIEQMR 123
Query: 122 LRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYT 181
L AT +LL R+DV++V++VS +YG+ +P+++ + ++ L G R D+ +R L E Y+
Sbjct: 124 LSATKALLE-REDVIIVATVSAIYGLGDPQSYLKMMLHLDRGDRIDQRDILRRLAELQYS 182
Query: 182 NNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSE 241
N V FE GNFRV+GD +D+FPA + A R+E +D E++ L+ FDP T + +
Sbjct: 183 RNDVVFERGNFRVRGDVIDVFPA--DSEDTAVRIELFDDEIDNLAFFDPLTNKTIRKVPR 240
Query: 242 LKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIREL 301
L IYP +VT +E V A+ +I V+L ++ LK + K E +RL +R YDLEM++EL
Sbjct: 241 LTIYPKTHYVTPRETVMDAIERIKVELDERLQQLKYLDKLVELQRLEQRTRYDLEMMQEL 300
Query: 302 GYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKEN 361
GYCSGIENYSRY GR G P L DY P + LLVIDESHVT+PQI AMY GDRSRKEN
Sbjct: 301 GYCSGIENYSRYLSGRPEGSPPPTLFDYLPANALLVIDESHVTVPQIGAMYKGDRSRKEN 360
Query: 362 LVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLD 421
LVEYGFRLP+ALDNRP+RF+E+E + P+T+ +SATP YE + V VEQ++RPTGL+D
Sbjct: 361 LVEYGFRLPSALDNRPMRFEEWEQIKPQTILVSATPGKYEAEHQDWV-VEQIVRPTGLID 419
Query: 422 PIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDV 481
P ++++P A QVDDL+ EI + + K ER+LVTTLTKRMAE+L+ YL HGI Y+HSD+
Sbjct: 420 PPVEIRPVATQVDDLLSEINKRLPKGERILVTTLTKRMAEDLTSYLYEHGIRVRYLHSDI 479
Query: 482 DTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 541
DT+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT G
Sbjct: 480 DTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIG 539
Query: 542 RAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIW--- 598
RAAR+I+GR I YAD+IT S++ M ET RRRAKQ A+N+ HGI P+ + K+ I
Sbjct: 540 RAARNINGRAILYADRITGSIERAMAETDRRRAKQEAHNKEHGIVPKGVSKSVQDIMEGS 599
Query: 599 -----GEGDVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKE 653
G+G S + E+ A + SM D +AD + I +K+M+ A++
Sbjct: 600 YNPGAGKGKQSKAKKVAETSADYKVESM---DDVAD------VRKAIVKLQKEMVEASEN 650
Query: 654 LDFLEAARLRDEAARLEKKLEQL 676
L F AA RD+ L+KKL+++
Sbjct: 651 LKFELAAGYRDQIRSLQKKLKEV 673
>gi|145219261|ref|YP_001129970.1| excinuclease ABC, B subunit [Prosthecochloris vibrioformis DSM 265]
gi|145205425|gb|ABP36468.1| excinuclease ABC, B subunit [Prosthecochloris vibrioformis DSM 265]
Length = 689
Score = 703 bits (1815), Expect = 0.0, Method: Composition-based stats.
Identities = 362/676 (53%), Positives = 484/676 (71%), Gaps = 6/676 (0%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
++L S + P GDQP AI L +G+ G QTLLGVTGSGKT+T++NV+A +P LV+S
Sbjct: 13 FRLVSPYAPAGDQPAAIAALTEGLKSGSDYQTLLGVTGSGKTYTMSNVIANAGKPVLVMS 72
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
HNKTLAAQLYGE + FFP+NAVEYF+SYYD+YQPEAYLP D YI KD+ IN EIE+LRL
Sbjct: 73 HNKTLAAQLYGELRQFFPDNAVEYFISYYDFYQPEAYLPTIDKYIAKDLRINDEIERLRL 132
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
+AT++LLSGRKDV+VVSSVSC+YG+ +PE + ++I L TG +RD F++ L+ ++
Sbjct: 133 KATSALLSGRKDVIVVSSVSCIYGLGSPEDWKSQIIELRTGMEKERDEFLQELIALHFVR 192
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
+ V G FRV+GD +D+ PA YD +A RVEF+ E+E L +FD +G G +
Sbjct: 193 DDVNPGPGKFRVRGDCIDLVPA---YDQIALRVEFFGSEIESLQSFDMESGEILGSDAYA 249
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
IYPA FV +E++ A+ I+ +L +++ L+ + EA RL ER YDLEM++ELG
Sbjct: 250 FIYPARQFVAEEEKLKTAMLAIEDELAGRLNELRADNRFVEAGRLEERTRYDLEMMKELG 309
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSGIENYSR+ R GERP+CLLDYFPED+L+V+DESHVT+PQIR MYGGDRSRK L
Sbjct: 310 YCSGIENYSRHISQRGPGERPYCLLDYFPEDYLVVVDESHVTLPQIRGMYGGDRSRKTIL 369
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VE+GFRLP+ALDNRPLRFDEFE + P+ + ISATP D+EL RS GV+VEQ++RPTGLLDP
Sbjct: 370 VEHGFRLPSALDNRPLRFDEFEEMAPQVVCISATPGDHELLRSGGVVVEQVVRPTGLLDP 429
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
++V+P Q+D+L+ EI R + + LV TLTKRM+E+L ++ + GI + Y+HS++
Sbjct: 430 PVEVRPVKGQIDNLLAEIRRHVAGGHKALVMTLTKRMSEDLHDFFRKSGIRSRYLHSEIK 489
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
+LER++I+ +LR G D L+GVNLLREGLDLPEVSLVAILDADKEGFLR+ RSL Q AGR
Sbjct: 490 SLERMQILRELRTGEIDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGR 549
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR+ G V+ YAD IT S++ +DETARRR Q AYN+ HGI P+ IVK+ I
Sbjct: 550 AARNAEGFVVLYADTITRSIREVLDETARRRTIQQAYNDEHGIVPRSIVKSVNQILDTTG 609
Query: 603 VSALQSDTESGAY--IEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAA 660
V+ + + + + + A L + L A++A + +M AA ++++ +AA
Sbjct: 610 VADAEERYRRRRFGLVPKPERLLAGALESLTADEGL-AMVAELRVEMQEAAVKMEYEKAA 668
Query: 661 RLRDEAARLEKKLEQL 676
LRDE +LE+ + L
Sbjct: 669 YLRDEITKLEQGIGAL 684
>gi|113970398|ref|YP_734191.1| excinuclease ABC, B subunit [Shewanella sp. MR-4]
gi|113885082|gb|ABI39134.1| excinuclease ABC, B subunit [Shewanella sp. MR-4]
Length = 673
Score = 703 bits (1815), Expect = 0.0, Method: Composition-based stats.
Identities = 370/673 (54%), Positives = 483/673 (71%), Gaps = 10/673 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
++L S+F P GDQP AI +LV G+ G+ QTLLGVTGSGKTFT+ANV+A + RPT++++
Sbjct: 6 FQLESQFAPAGDQPTAIAKLVDGLESGLACQTLLGVTGSGKTFTIANVIAQLGRPTIIMA 65
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLYGE K FFP NAVEYFVSYYDYYQPEAY+P ++T+IEKD ++NA IE++RL
Sbjct: 66 PNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQMRL 125
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL RKDV++++SVS +YG+ +P+++ + ++ L G + ++ L E YT
Sbjct: 126 SATKALLE-RKDVVLIASVSAIYGLGDPDSYMKMLLHLRQGDTMGQRDILKRLSELQYTR 184
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N +E + G FR +G+ +DIFPA G+ RVE +D E+ERLS FDP TG+ ++
Sbjct: 185 NDLELQRGTFRARGEVIDIFPADSDRYGI--RVELFDDEIERLSEFDPLTGQIVKRIART 242
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
+YP +VT +E++ A I +L + +L + K EA+R++ERV YD+EM+ ELG
Sbjct: 243 TVYPKTHYVTPREKILEATESIKQELRERKQYLLDNNKLIEAQRIHERVQYDIEMMVELG 302
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSGIENYSRY GR GE P LLDY P D LL+IDESHVT+PQI AMY GDRSRK L
Sbjct: 303 YCSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKTTL 362
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFRLP+ALDNRPL+F+EFE L P+T+Y+SATP YEL +S+G IVEQ++RPTGLLDP
Sbjct: 363 VEYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPNPYELEKSDGEIVEQVVRPTGLLDP 422
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
++V+P + QVDDL+ E+A+ + ERVLVTTLTKRM+E+L+EYL HG+ Y+HSD+D
Sbjct: 423 ELEVRPVSIQVDDLLSEVAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDID 482
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
T+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLV ILDADKEGFLRS RSL QT GR
Sbjct: 483 TVERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGR 542
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR+++G+VI YAD+IT SM M ET RRR KQ AYN HGI P+ +VK + D
Sbjct: 543 AARNVNGKVILYADRITQSMAKAMGETERRREKQRAYNLEHGIVPKGVVKRITDVMDVDD 602
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLS--KPKLEALIASTKKQMLAAAKELDFLEAA 660
++E G Y + S A+P A +L I +KQM A+ L+F +AA
Sbjct: 603 ----GRESEKG-YRQSSLNKVAEPKAKRYQADAAQLSHDIDKLEKQMHEHARNLEFEQAA 657
Query: 661 RLRDEAARLEKKL 673
LRDE RL + L
Sbjct: 658 ALRDEVKRLRELL 670
>gi|118581885|ref|YP_903135.1| excinuclease ABC, B subunit [Pelobacter propionicus DSM 2379]
gi|118504595|gb|ABL01078.1| excinuclease ABC, B subunit [Pelobacter propionicus DSM 2379]
Length = 701
Score = 703 bits (1815), Expect = 0.0, Method: Composition-based stats.
Identities = 379/706 (53%), Positives = 483/706 (68%), Gaps = 51/706 (7%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
+ L + + P GDQP AI +LV+GI G Q LLGVTGSGKTFTVANV+A RP L+L+
Sbjct: 4 FTLKTDYTPRGDQPAAIAELVEGIERGDQHQVLLGVTGSGKTFTVANVIARTGRPALLLA 63
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLY E K FP+NAVE+FVSYYDYYQPEAYLP +DT+IEKD AIN EI+K+R
Sbjct: 64 PNKTLAAQLYAEMKELFPDNAVEFFVSYYDYYQPEAYLPSSDTFIEKDSAINDEIDKMRH 123
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT SLL+ R+DV++V+SVSC+YG+ +PEA++ I G+ RD ++ LV Y
Sbjct: 124 SATRSLLT-RRDVIIVASVSCIYGIGSPEAYASLHIFFRQGEEYGRDTLLQKLVAIQYER 182
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDG-VAYRVEFWDGEVERLSTFDPRTGREYGLLSE 241
N +F G FRV+GD V++FPA YD A R+EF+ EVE +S DP G L++
Sbjct: 183 NDTDFHRGTFRVRGDVVEVFPA---YDSDKALRIEFFGDEVESISEIDPLRGAVLQRLTK 239
Query: 242 LKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIREL 301
IYPA+ +V T+E ++RAV +I VDLG ++ + +E EA+R+ +R +D+EM+ E+
Sbjct: 240 CTIYPASHYVATRETLERAVEQIRVDLGERIRYFRENNMLLEAQRIEQRTFFDIEMMEEM 299
Query: 302 GYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKEN 361
G+C GIENYSRYFDGR+ GE P+ L+DYFP+DF+L +DESH++IPQ+ MY GDRSRKE
Sbjct: 300 GFCQGIENYSRYFDGRETGEPPYTLIDYFPDDFVLYVDESHISIPQVGGMYRGDRSRKET 359
Query: 362 LVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLD 421
LV YGFRLPAALDNRPL F EFEA + +Y+SATPADYEL +S GV VEQ+IRPTGLLD
Sbjct: 360 LVNYGFRLPAALDNRPLNFREFEARVHQAVYVSATPADYELEKSNGVFVEQVIRPTGLLD 419
Query: 422 PIIDVKPTA-----------------------------------NQVDDLMEEIARCIEK 446
P+I V+P QVDDL+ E+ + + K
Sbjct: 420 PVIQVRPVTAGRQIPPSPPLKKGDLPSGDDEYPPFEKGGAGGMYGQVDDLLHEVRQTVAK 479
Query: 447 KERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVDTLERVRIMEDLRKGVYDALIGVNL 506
ERVLVTTLTKRMAEEL+ Y G+ Y+HSD+ T+ER++I+ DLR G +D L+G+NL
Sbjct: 480 GERVLVTTLTKRMAEELTSYYGELGVRIRYLHSDIVTIERMQILRDLRMGEFDVLVGINL 539
Query: 507 LREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAARHIHGRVIFYADKITDSMQLTM 566
LREGLDLPEVSLVAILDADKEGFLRS RSL QT GRAAR+ +GRV+ YAD IT SMQ +
Sbjct: 540 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTCGRAARNANGRVLMYADSITRSMQACI 599
Query: 567 DETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGDVSALQSDTESGAYIEESSMVAADP 626
DET RRR KQLA+N+ HGITP+ + K+ I G S E Y + S AA+
Sbjct: 600 DETQRRREKQLAWNQEHGITPETVRKSMQTILG--------SIEEKDYYTPKVS--AAET 649
Query: 627 LADYLSKPK-LEALIASTKKQMLAAAKELDFLEAARLRDEAARLEK 671
+Y PK + L+ +K+ML AAK+LDF +AA LRD LE+
Sbjct: 650 PEEYGVAPKDIPKLVKKLRKEMLGAAKQLDFEKAAELRDRVRTLEE 695
>gi|153838169|ref|ZP_01990836.1| excinuclease ABC, B subunit [Vibrio parahaemolyticus AQ3810]
gi|149748428|gb|EDM59287.1| excinuclease ABC, B subunit [Vibrio parahaemolyticus AQ3810]
Length = 676
Score = 703 bits (1814), Expect = 0.0, Method: Composition-based stats.
Identities = 372/674 (55%), Positives = 484/674 (71%), Gaps = 9/674 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
Y+L S ++P+GDQP AI+QL++G++ G+ QTLLGVTGSGKTFT+ANV+A RP ++L+
Sbjct: 5 YELVSEYQPSGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLA 64
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLYGE K+FFP NAVEYFVSYYDYYQPEAY+P TDT+IEKD ++NA IE++RL
Sbjct: 65 PNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL RKD ++V+SVS +YG+ +PE++ + ++ L G D+ +R L E Y+
Sbjct: 125 SATKALLE-RKDAIIVASVSAIYGLGDPESYLQMMLHLRRGDVIDQRDMLRRLAELQYSR 183
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGR-EYGLLSE 241
N V FE G FRV+G+ +DIFPA D V RVE +D EV+ +S FDP TG + L
Sbjct: 184 NDVAFERGQFRVRGEVIDIFPAESDQDAV--RVEMFDDEVDCISVFDPLTGVVKQRDLPR 241
Query: 242 LKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIREL 301
IYP +VT ++++ A+ I V+L + L E K E +R+ +R +D+EM+ EL
Sbjct: 242 YTIYPKTHYVTPRDRILEAIESIKVELEVRKKQLLENNKLIEEQRISQRTQFDIEMMNEL 301
Query: 302 GYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKEN 361
G+CSGIENYSRY GR GE P L DY P D LL+IDESHVT+PQI AMY GDRSRKE
Sbjct: 302 GFCSGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKET 361
Query: 362 LVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLD 421
LVE+GFRLP+ALDNRPL+F+EFE+L P+T+++SATP +YEL++S G I +Q++RPTGLLD
Sbjct: 362 LVEFGFRLPSALDNRPLKFEEFESLAPQTIFVSATPGNYELDKSAGEIADQVVRPTGLLD 421
Query: 422 PIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDV 481
PI++V+P A QVDDL+ EI K+ERVLVTTLTKRMAE+L+EYL H + Y+HSD+
Sbjct: 422 PILEVRPVATQVDDLLSEIRIRAAKEERVLVTTLTKRMAEDLTEYLHEHDVRVRYLHSDI 481
Query: 482 DTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 541
DT+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT G
Sbjct: 482 DTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 541
Query: 542 RAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEG 601
RAAR+I G+ I YAD IT SM+ MDET RRR KQ AYNE GITPQ + +N I G
Sbjct: 542 RAARNIEGKAILYADSITKSMKKAMDETNRRREKQQAYNEKMGITPQALKRNIKDIMELG 601
Query: 602 DV--SALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEA 659
D+ S Q +T+ + S + + +S +LE I+ + M A++L+F A
Sbjct: 602 DITKSKRQRNTKQ---VPLSKVAEPSQTYEVMSPQQLEKEISRLEAAMYQHAQDLEFELA 658
Query: 660 ARLRDEAARLEKKL 673
A RDE +L +
Sbjct: 659 AEKRDEIEKLRAQF 672
>gi|146310929|ref|YP_001176003.1| excinuclease ABC, B subunit [Enterobacter sp. 638]
gi|145317805|gb|ABP59952.1| excinuclease ABC, B subunit [Enterobacter sp. 638]
Length = 673
Score = 703 bits (1814), Expect = 0.0, Method: Composition-based stats.
Identities = 375/670 (55%), Positives = 481/670 (71%), Gaps = 8/670 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
+KL S F+P+GDQPEAIR+L +G+ +G+ QTLLGVTGSGKTFTVANV+A + RPT+VL+
Sbjct: 5 FKLNSAFRPSGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTVANVIADLQRPTMVLA 64
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLYGE K FFP+NAVEYFVSYYDYYQPEAY+P +DT+IEKD ++N IE++RL
Sbjct: 65 PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL R+DV+VV+SVS +YG+ +P+ + + ++ L G D+ +R L E Y
Sbjct: 125 SATKALLE-RRDVIVVASVSAIYGLGDPDLYLKMMLHLTNGMIIDQRAILRRLAELQYAR 183
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N F+ G FRV+G+ +DIFPA D +A RVE +D EVERLS FDP TG ++
Sbjct: 184 NDQAFQRGTFRVRGEVIDIFPAES--DDLALRVELFDEEVERLSLFDPLTGHVDSVIQRF 241
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
+YP +VT +E++ +A+ I V+L + L E K E +RL +R +DLEM+ ELG
Sbjct: 242 TVYPKTHYVTPRERIVQAMEDIKVELAERRKVLLENNKLLEEQRLSQRTQFDLEMMNELG 301
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
YCSGIENYSRY GR GE P L DY P D LLV+DESHVTIPQI MY GDR+RKE L
Sbjct: 302 YCSGIENYSRYLSGRGPGEAPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL 361
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
VEYGFRLP+ALDNRP++F+EFEAL P+T+Y+SATP +YEL +S +V+Q++RPTGLLDP
Sbjct: 362 VEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGEDVVDQVVRPTGLLDP 421
Query: 423 IIDVKPTANQVDDLMEEI-ARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDV 481
II+V+P QVDDL+ EI AR I ERVLVTTLTKRMAE+L+EYL HG Y+HSD+
Sbjct: 422 IIEVRPVGTQVDDLLSEIRARAI-INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480
Query: 482 DTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 541
DT+ER+ I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT G
Sbjct: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540
Query: 542 RAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEG 601
RAAR+I+G+ I Y D+IT SM + ET RRR KQ YN +GI PQ + K I G
Sbjct: 541 RAARNINGKAILYGDRITASMAKAISETERRREKQHQYNLDNGIVPQGLNKKVVDILALG 600
Query: 602 DVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAAR 661
A T++ + S V ADP+ L+ L+ I + M+ A+ L+F EAA+
Sbjct: 601 QGLA---KTKAKGRGKSRSPVEADPVELVLTPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657
Query: 662 LRDEAARLEK 671
+RD+ +L +
Sbjct: 658 VRDQLHQLRQ 667
>gi|29375355|ref|NP_814509.1| excinuclease ABC subunit B [Enterococcus faecalis V583]
gi|81838991|sp|Q837R9|UVRB_ENTFA UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
gi|29342815|gb|AAO80579.1| excinuclease ABC, subunit B [Enterococcus faecalis V583]
Length = 665
Score = 703 bits (1814), Expect = 0.0, Method: Composition-based stats.
Identities = 367/668 (54%), Positives = 485/668 (72%), Gaps = 15/668 (2%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
+ L S+++P GDQP AI +LV G+ G AQ LLG TG+GKTFT++NV+ VN+PTLV++
Sbjct: 10 FHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQEVNKPTLVIA 69
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
HNKTLA QLYGEFK FFP+NAVEYFVSYYDYYQPEAY+P +DTYIEKD +IN EI+KLR
Sbjct: 70 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 129
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT+SLL R DV+VV+SVSC++G+ +P +S++V+SL G DR+ ++ LV+ +
Sbjct: 130 SATSSLLE-RNDVIVVASVSCIFGLGDPREYSQQVVSLRVGMEMDRNELLKSLVDIQFER 188
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242
N ++F+ G FRV+GD V+IFPA D A RVEF+ E++R+ D TG G +
Sbjct: 189 NDIDFQRGRFRVRGDVVEIFPASR--DEHALRVEFFGDEIDRIREVDALTGEIVGETEHV 246
Query: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302
I+PA FVT +E ++ A+ +I +L A++ L+ K EA+RL +R YD+EM+RE+G
Sbjct: 247 AIFPATHFVTNEEHMEHAISQIQEELEARLKVLRSENKLLEAQRLEQRTNYDIEMMREMG 306
Query: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362
Y SGIENYSR+ DGR GE P+ LLD+FP+DFLLVIDESHVT+PQIR MY GDR+RK+ L
Sbjct: 307 YTSGIENYSRHMDGRQEGEPPYTLLDFFPDDFLLVIDESHVTMPQIRGMYNGDRARKQML 366
Query: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422
V+YGFRLP+ALDNRPLR +EFE + +Y+SATP YE+ ++E +V+Q+IRPTGLLDP
Sbjct: 367 VDYGFRLPSALDNRPLRLEEFEQHVNQIVYVSATPGPYEMEQTE-TVVQQIIRPTGLLDP 425
Query: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482
++++P Q+DDL+ EI IEK +RV VTTLTK+MAE+L++Y G+ Y+HSD+
Sbjct: 426 EVEIRPIMGQIDDLVGEIHERIEKDQRVFVTTLTKKMAEDLTDYFKELGLKVKYLHSDIK 485
Query: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542
TLER I+ DLR G +D LIG+NLLREG+D+PEVSL+AILDADKEGFLRS RSL QT GR
Sbjct: 486 TLERTEIIRDLRLGEFDILIGINLLREGIDVPEVSLIAILDADKEGFLRSERSLVQTMGR 545
Query: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602
AAR+ G+VI YADKITDSMQ MDETARRRA Q AYNE HGI P+ I+K +
Sbjct: 546 AARNAEGKVIMYADKITDSMQRAMDETARRRAIQEAYNEEHGIEPKTIIK---------E 596
Query: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARL 662
+ L S +++ ++ ++V D LS+ + L+ +++M AAK LDF AA L
Sbjct: 597 IRDLISISKTAD--KDETVVQLDKSYKDLSRQEKADLLMKLEREMKDAAKALDFETAATL 654
Query: 663 RDEAARLE 670
RD L+
Sbjct: 655 RDTILELK 662
>gi|94493090|ref|ZP_01300294.1| hypothetical protein Rgryl_01000919 [Rickettsiella grylli]
Length = 669
Score = 703 bits (1814), Expect = 0.0, Method: Composition-based stats.
Identities = 367/672 (54%), Positives = 475/672 (70%), Gaps = 10/672 (1%)
Query: 2 DYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVL 61
+++L S FKP GDQP AI+ LV+G+ G+ QTLLGVTGSGKTF++A+V+ + RP L+L
Sbjct: 4 NFELISNFKPAGDQPTAIKALVKGLQSGLAYQTLLGVTGSGKTFSIAHVIQKIQRPVLIL 63
Query: 62 SHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLR 121
+ NKTLAAQLYGE ++FFP NAVEYFVSYYDYYQPEAY+P TDTYIEKD AIN IE++R
Sbjct: 64 APNKTLAAQLYGEMRSFFPHNAVEYFVSYYDYYQPEAYVPTTDTYIEKDAAINEHIEQMR 123
Query: 122 LRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYT 181
L AT SLL R+DV++V++VS +YG+ +P + + ++ + G + +R L E YT
Sbjct: 124 LSATKSLLE-RRDVIIVATVSAIYGLGDPNTYVDMMLHIRRGDEICQRFILRRLAELQYT 182
Query: 182 NNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSE 241
N +F +RV+GD +D++PA + V R+E D +E LS FDP TG Y +
Sbjct: 183 RNDTDFRRATYRVRGDVIDVYPAESAEEAV--RIELLDDTIEHLSFFDPLTGELYRRVPR 240
Query: 242 LKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIREL 301
L IYP +VT ++++ AV I +L ++ L+ K E +RL +R +D+EM+ EL
Sbjct: 241 LTIYPKTHYVTPRDKILSAVESIQRELKERLAQLQSAHKLIEFQRLEQRTRFDIEMLLEL 300
Query: 302 GYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKEN 361
GYC+GIENYSRY GRDAG+ P L+DY P+D LLVIDESHVT+PQ+ AMY GDRSRKE
Sbjct: 301 GYCNGIENYSRYLSGRDAGQPPPTLMDYLPKDALLVIDESHVTVPQLSAMYRGDRSRKET 360
Query: 362 LVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLD 421
LV YGFRLP+ALDNRPL+F EF +T+YISATP+ YEL RS G IVEQ+IRPTGL+D
Sbjct: 361 LVAYGFRLPSALDNRPLQFQEFSDFAFQTVYISATPSTYELERS-GAIVEQVIRPTGLVD 419
Query: 422 PIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDV 481
P+I+V+P A QVDDL+ EI C+ K ERVLVTTLTKR++E+L+EYL H + Y+HSD+
Sbjct: 420 PVIEVRPQATQVDDLLSEIHYCVAKNERVLVTTLTKRLSEDLTEYLAEHNVKVRYLHSDI 479
Query: 482 DTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 541
DT+ERV I+ DLR G +D L+G+NLLREGLD+PEV+LVAILDADKEGFLRS RSL QT G
Sbjct: 480 DTVERVEIIRDLRLGQFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIG 539
Query: 542 RAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEG 601
RAARHI GR I YADKIT SMQ +DET RRR KQLA+N+ H ITP+ I K I EG
Sbjct: 540 RAARHIQGRAILYADKITGSMQKAIDETERRRNKQLAFNKKHHITPKGIAKAVHDIL-EG 598
Query: 602 DVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAAR 661
S + + + + E+ A LS + I +++M AK L F EAA
Sbjct: 599 AKSDMSTHKQRVLNVAEARAYYAT-----LSPEECAKHIKQLEREMFHYAKNLQFEEAAE 653
Query: 662 LRDEAARLEKKL 673
RD+ +L++K+
Sbjct: 654 TRDKLKKLKEKI 665
>gi|28898874|ref|NP_798479.1| excinuclease ABC subunit B [Vibrio parahaemolyticus RIMD 2210633]
gi|32130285|sp|Q87MX6|UVRB_VIBPA UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
gi|28807093|dbj|BAC60363.1| excinuclease ABC, subunit B [Vibrio parahaemolyticus RIMD 2210633]
Length = 676
Score = 702 bits (1813), Expect = 0.0, Method: Composition-based stats.
Identities = 372/674 (55%), Positives = 483/674 (71%), Gaps = 9/674 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
Y+L S ++P+GDQP AI+QL++G++ G+ QTLLGVTGSGKTFT+ANV+A RP ++L+
Sbjct: 5 YELVSEYQPSGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLA 64
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLYGE K+FFP NAVEYFVSYYDYYQPEAY+P TDT+IEKD ++NA IE++RL
Sbjct: 65 PNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL RKD ++V+SVS +YG+ +PE++ + ++ L G D+ +R L E Y+
Sbjct: 125 SATKALLE-RKDAIIVASVSAIYGLGDPESYLQMMLHLRRGDVIDQRDMLRRLAELQYSR 183
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGR-EYGLLSE 241
N V FE G FRV+G+ +DIFPA D V RVE +D EV+ +S FDP TG + L
Sbjct: 184 NDVAFERGQFRVRGEVIDIFPAESDQDAV--RVEMFDDEVDCISVFDPLTGVVKQRDLPR 241
Query: 242 LKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIREL 301
IYP +VT ++++ A+ I V+L + L E K E +R+ +R +D+EM+ EL
Sbjct: 242 YTIYPKTHYVTPRDRILEAIESIKVELEVRKKQLLENNKLIEEQRISQRTQFDIEMMNEL 301
Query: 302 GYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKEN 361
G+CSGIENYSRY GR GE P L DY P D LL+IDESHVT+PQI AMY GDRSRKE
Sbjct: 302 GFCSGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKET 361
Query: 362 LVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLD 421
LVE+GFRLP+ALDNRPL+F+EFE+L P+T+++SATP +YEL +S G I +Q++RPTGLLD
Sbjct: 362 LVEFGFRLPSALDNRPLKFEEFESLAPQTIFVSATPGNYELEKSAGEIADQVVRPTGLLD 421
Query: 422 PIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDV 481
PI++V+P A QVDDL+ EI K+ERVLVTTLTKRMAE+L+EYL H + Y+HSD+
Sbjct: 422 PILEVRPVATQVDDLLSEIRIRAAKEERVLVTTLTKRMAEDLTEYLHEHDVRVRYLHSDI 481
Query: 482 DTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 541
DT+ERV I+ DLR G +D L+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT G
Sbjct: 482 DTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 541
Query: 542 RAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEG 601
RAAR+I G+ I YAD IT SM+ MDET RRR KQ AYNE GITPQ + +N I G
Sbjct: 542 RAARNIEGKAILYADNITKSMKKAMDETNRRREKQQAYNEKMGITPQALKRNIKDIMELG 601
Query: 602 DV--SALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEA 659
D+ S Q +T+ + S + + +S +LE I+ + M A++L+F A
Sbjct: 602 DITKSKRQRNTKQ---VPLSKVAEPSQTYEVMSPQQLEKEISRLEAAMYQHAQDLEFELA 658
Query: 660 ARLRDEAARLEKKL 673
A RDE +L +
Sbjct: 659 AEKRDEIEKLRAQF 672
>gi|15642773|ref|NP_230664.1| excinuclease ABC subunit B [Vibrio cholerae O1 biovar eltor str.
N16961]
Length = 676
Score = 702 bits (1812), Expect = 0.0, Method: Composition-based stats.
Identities = 366/673 (54%), Positives = 487/673 (72%), Gaps = 7/673 (1%)
Query: 3 YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62
++L S ++P GDQP AI+QL++G+ G+ QTLLGVTGSGKTFT+ANV+A PT++L+
Sbjct: 5 FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQLPTIILA 64
Query: 63 HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122
NKTLAAQLYGE KAFFP NAVEYFVSYYDYYQPEAY+P TDT+IEKD ++NA IE++RL
Sbjct: 65 PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124
Query: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182
AT +LL RKD ++V+SVS +YG+ +P+++ + ++ L G ++ +R L E Y+
Sbjct: 125 SATKALLE-RKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSR 183
Query: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGL-LSE 241
N + FE G FRV+G+ +DIFPA D A RVE +D E+E +S FDP TG L+
Sbjct: 184 NDMAFERGQFRVRGEVIDIFPAES--DQEAVRVEMFDDEIECISLFDPLTGVITSRDLAR 241
Query: 242 LKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIREL 301
IYP +VT +E++ A+ +I +L + +L + K E +R+ +R +D+EM+ EL
Sbjct: 242 FTIYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNEL 301
Query: 302 GYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKEN 361
G+CSGIENYSRY GR GE P L DY P D LL+IDESHVT+PQI AM+ GDRSRKE
Sbjct: 302 GFCSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKET 361
Query: 362 LVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLD 421
LVE+GFRLP+ALDNRPL+FDEFEAL P+T+++SATP++YEL +S G + EQ++RPTGLLD
Sbjct: 362 LVEF