BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= PG0931
(310 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|34540785|ref|NP_905264.1| iron dependent repressor, puta... 623 e-177
gi|148658588|ref|YP_001278793.1| iron dependent repressor [... 161 5e-38
gi|153891487|ref|ZP_02012496.1| iron dependent repressor [O... 160 1e-37
gi|83816669|ref|YP_446151.1| iron dependent repressor, puta... 101 5e-20
gi|76260419|ref|ZP_00768055.1| Iron dependent repressor:Iro... 101 6e-20
gi|118047649|ref|ZP_01516281.1| FeoA [Chloroflexus aggregan... 100 1e-19
gi|145294200|ref|YP_001137021.1| hypothetical protein cgR_0... 100 2e-19
gi|113938714|ref|ZP_01424579.1| iron dependent repressor [H... 99 2e-19
gi|119963034|ref|YP_948365.1| putative Iron dependent repre... 99 5e-19
gi|72162065|ref|YP_289722.1| iron dependent repressor [Ther... 97 1e-18
gi|116671204|ref|YP_832137.1| iron (metal) dependent repres... 96 2e-18
gi|134102468|ref|YP_001108129.1| iron (metal) dependent rep... 96 3e-18
gi|55980723|ref|YP_144020.1| transcriptional repressor [The... 96 3e-18
gi|46198706|ref|YP_004373.1| transcriptional repressor [The... 95 5e-18
gi|62424544|ref|ZP_00379689.1| COG1321: Mn-dependent transc... 95 6e-18
gi|88855886|ref|ZP_01130548.1| putative transcriptional reg... 93 3e-17
gi|78485249|ref|YP_391174.1| Iron dependent repressor [Thio... 90 2e-16
gi|148273712|ref|YP_001223273.1| hypothetical protein CMM_2... 89 4e-16
gi|116662114|ref|YP_829169.1| iron (metal) dependent repres... 88 7e-16
gi|120403338|ref|YP_953167.1| iron dependent repressor [Myc... 88 7e-16
gi|68536571|ref|YP_251276.1| manganese-dependent repressor ... 88 8e-16
gi|145224606|ref|YP_001135284.1| iron dependent repressor [... 87 9e-16
gi|108799064|ref|YP_639261.1| iron (metal) dependent repres... 87 1e-15
gi|118473748|ref|YP_886989.1| iron repressor protein [Mycob... 87 1e-15
gi|15789756|ref|NP_279580.1| SirR [Halobacterium sp. NRC-1]... 87 1e-15
gi|154509235|ref|ZP_02044877.1| hypothetical protein ACTODO... 87 2e-15
gi|62425392|ref|ZP_00380526.1| COG1321: Mn-dependent transc... 87 2e-15
gi|15807523|ref|NP_296259.1| iron dependent repressor, puta... 87 2e-15
gi|118465260|ref|YP_882856.1| iron repressor protein [Mycob... 86 2e-15
gi|68552067|ref|ZP_00591460.1| Iron dependent repressor:Feo... 86 3e-15
gi|86131327|ref|ZP_01049926.1| Iron dependent repressor [Ce... 86 4e-15
gi|15609925|ref|NP_217304.1| PROBABLE TRANSCRIPTIONAL REPRE... 85 5e-15
gi|118617700|ref|YP_906032.1| transcriptional repressor Sir... 85 6e-15
gi|152964950|ref|YP_001360734.1| iron dependent repressor [... 84 8e-15
gi|110667522|ref|YP_657333.1| transcription regulator SirR ... 84 1e-14
gi|55377375|ref|YP_135225.1| transcription repressor [Haloa... 84 1e-14
gi|94986367|ref|YP_605731.1| iron (metal) dependent repress... 84 1e-14
gi|50954157|ref|YP_061445.1| iron-dependant repressor, DtxR... 84 2e-14
gi|108803498|ref|YP_643435.1| iron (metal) dependent repres... 83 2e-14
gi|31793964|ref|NP_856457.1| PROBABLE TRANSCRIPTIONAL REPRE... 82 4e-14
gi|38233226|ref|NP_938993.1| Putative diphtheria toxin repr... 82 5e-14
gi|126645463|ref|ZP_01718007.1| putative transcriptional re... 82 6e-14
gi|111023611|ref|YP_706583.1| probable Fe(2+)-dependent tra... 81 7e-14
gi|88804291|ref|ZP_01119811.1| iron dependent repressor [Ro... 81 8e-14
gi|54026022|ref|YP_120264.1| putative transcriptional regul... 81 1e-13
gi|148658078|ref|YP_001278283.1| FeoA family protein [Rosei... 80 1e-13
gi|76802081|ref|YP_327089.1| transcription regulator [Natro... 80 2e-13
gi|108799143|ref|YP_639340.1| iron (metal) dependent repres... 80 2e-13
gi|19551873|ref|NP_599875.1| Mn-dependent transcriptional r... 78 6e-13
gi|145294810|ref|YP_001137631.1| hypothetical protein cgR_0... 78 7e-13
gi|25027207|ref|NP_737261.1| putative regulatory protein [C... 78 8e-13
gi|88802031|ref|ZP_01117559.1| Iron dependent repressor [Po... 78 8e-13
gi|81253186|ref|ZP_00877746.1| COG1321: Mn-dependent transc... 77 9e-13
gi|149176784|ref|ZP_01855395.1| iron-dependent transcriptio... 77 1e-12
gi|120403440|ref|YP_953269.1| iron dependent repressor [Myc... 77 1e-12
gi|15609848|ref|NP_217227.1| IRON-DEPENDENT REPRESSOR AND A... 77 1e-12
gi|118468273|ref|YP_887081.1| iron-dependent repressor IdeR... 77 1e-12
gi|156743261|ref|YP_001433390.1| iron (metal) dependent rep... 77 1e-12
gi|110637770|ref|YP_677977.1| transcriptional regulator [Cy... 77 1e-12
gi|13399468|pdb|1FX7|A Chain A, Crystal Structure Of The Ir... 77 1e-12
gi|153895131|ref|ZP_02015714.1| iron dependent repressor [H... 77 2e-12
gi|87310429|ref|ZP_01092559.1| iron repressor protein [Blas... 77 2e-12
gi|118465346|ref|YP_882781.1| iron-dependent repressor IdeR... 76 3e-12
gi|145224530|ref|YP_001135208.1| iron dependent repressor [... 76 3e-12
gi|119952751|ref|YP_950214.1| putative Iron dependent repre... 75 4e-12
gi|88803088|ref|ZP_01118614.1| putative metal-dependent tra... 75 4e-12
gi|1171105|gb|AAA86056.1| similar to the Corynebacterium di... 75 4e-12
gi|149369473|ref|ZP_01889325.1| Mn-dependent transcriptiona... 75 6e-12
gi|110638423|ref|YP_678632.1| Mn-dependent transcriptional ... 75 7e-12
gi|86135190|ref|ZP_01053772.1| putative transcriptional reg... 74 1e-11
gi|15827486|ref|NP_301749.1| iron dependent repressor [Myco... 74 1e-11
gi|126645074|ref|ZP_01717618.1| iron dependent repressor [A... 73 2e-11
gi|126662849|ref|ZP_01733848.1| Mn-dependent transcriptiona... 73 2e-11
gi|145296525|ref|YP_001139346.1| hypothetical protein cgR_2... 73 2e-11
gi|149277982|ref|ZP_01884121.1| Mn-dependent transcriptiona... 73 2e-11
gi|111023768|ref|YP_706740.1| Fe(2+)-dependent transcriptio... 73 3e-11
gi|7110452|gb|AAF36925.1|AF221951_1 transcriptional regulat... 72 3e-11
gi|145594003|ref|YP_001158300.1| iron dependent repressor [... 72 3e-11
gi|118618674|ref|YP_907006.1| iron-dependent repressor and ... 72 4e-11
gi|146298695|ref|YP_001193286.1| iron dependent repressor [... 72 5e-11
gi|88711384|ref|ZP_01105472.1| iron dependent repressor [Fl... 71 7e-11
gi|62391367|ref|YP_226769.1| metal-dependent transcriptiona... 71 8e-11
gi|21674552|ref|NP_662617.1| iron-dependent repressor [Chlo... 71 1e-10
gi|21227136|ref|NP_633058.1| Transcriptional repressor [Met... 71 1e-10
gi|10334814|gb|AAG16749.1|AF277002_1 iron dependent regulat... 70 1e-10
gi|19553726|ref|NP_601728.1| Mn-dependent transcriptional r... 70 1e-10
gi|67919818|ref|ZP_00513379.1| Iron dependent repressor:Feo... 70 1e-10
gi|28493079|ref|NP_787240.1| iron-dependent repressor ideR ... 70 2e-10
gi|86141000|ref|ZP_01059559.1| probable transcriptional rep... 70 2e-10
gi|124009310|ref|ZP_01693989.1| iron dependent repressor [M... 70 2e-10
gi|28572287|ref|NP_789067.1| iron-dependent repressor [Trop... 69 3e-10
gi|54025749|ref|YP_119991.1| putative transcriptional regul... 69 4e-10
gi|83855826|ref|ZP_00949355.1| putative transcriptional reg... 69 4e-10
gi|134098357|ref|YP_001104018.1| iron (metal) dependent rep... 69 4e-10
gi|149277010|ref|ZP_01883152.1| transcriptional regulator [... 69 5e-10
gi|147920271|ref|YP_685959.1| Fe-dependent transcription re... 69 5e-10
gi|134104578|pdb|2ISZ|A Chain A, Crystal Structure Of A Two... 69 5e-10
gi|6573375|pdb|1B1B|A Chain A, Iron Dependent Regulator 68 6e-10
gi|119882702|ref|ZP_01648970.1| iron (metal) dependent repr... 68 8e-10
gi|91214982|ref|ZP_01251954.1| putative transcriptional reg... 68 9e-10
gi|89889866|ref|ZP_01201377.1| putative Mn- or Fe-dependent... 67 1e-09
gi|41408993|ref|NP_961829.1| hypothetical protein MAP2895 [... 67 1e-09
gi|154507891|ref|ZP_02043533.1| hypothetical protein ACTODO... 67 1e-09
gi|899422|emb|CAA90388.1| iron repressor [Streptomyces pilo... 67 1e-09
gi|124027060|ref|YP_001012380.1| predicted Iron dependent r... 67 1e-09
gi|20093126|ref|NP_619201.1| iron dependent repressor [Meth... 67 2e-09
gi|120437529|ref|YP_863215.1| iron dependent repressor [Gra... 67 2e-09
gi|149176921|ref|ZP_01855530.1| manganese ABC transporter p... 66 2e-09
gi|148658625|ref|YP_001278830.1| iron dependent repressor [... 66 2e-09
gi|150024191|ref|YP_001295017.1| Probable metal-dependent t... 66 2e-09
gi|88911292|sp|Q8FPG6|DTXR_COREF Diphtheria toxin repressor... 66 3e-09
gi|50955348|ref|YP_062636.1| iron-dependent repressor, DxtR... 66 3e-09
gi|152967496|ref|YP_001363280.1| iron dependent repressor [... 66 4e-09
gi|25028368|ref|NP_738422.1| diptheria toxin repressor [Cor... 65 4e-09
gi|78486484|ref|YP_392409.1| ABC-type Mn2+/Zn2+ transport s... 65 4e-09
gi|118048897|ref|ZP_01517456.1| iron dependent repressor [C... 65 5e-09
gi|83590254|ref|YP_430263.1| FeoA [Moorella thermoacetica A... 65 5e-09
gi|117927400|ref|YP_871951.1| iron (metal) dependent repres... 65 5e-09
gi|11497861|ref|NP_069083.1| iron-dependent repressor (desR... 65 5e-09
gi|89895357|ref|YP_518844.1| hypothetical protein DSY2611 [... 65 6e-09
gi|109645702|ref|ZP_01369622.1| FeoA [Desulfitobacterium ha... 65 6e-09
gi|145295825|ref|YP_001138646.1| hypothetical protein cgR_1... 65 6e-09
gi|29830398|ref|NP_825032.1| iron dependent regulatory prot... 65 7e-09
gi|15673238|ref|NP_267412.1| metalloregulator [Lactococcus ... 65 8e-09
gi|19553124|ref|NP_601126.1| Mn-dependent transcriptional r... 64 8e-09
gi|73668133|ref|YP_304148.1| iron dependent repressor [Meth... 64 1e-08
gi|134104576|pdb|2ISY|A Chain A, Crystal Structure Of The N... 64 1e-08
gi|88855702|ref|ZP_01130365.1| iron-dependent repressor, Dx... 64 1e-08
gi|68536174|ref|YP_250879.1| iron-dependent repressor DtxR ... 64 1e-08
gi|116669359|ref|YP_830292.1| iron (metal) dependent repres... 64 1e-08
gi|86739140|ref|YP_479540.1| iron dependent repressor [Fran... 64 1e-08
gi|148273651|ref|YP_001223212.1| putative iron-dependent re... 64 1e-08
gi|28377808|ref|NP_784700.1| metal-dependent regulator [Lac... 64 1e-08
gi|21222784|ref|NP_628563.1| iron repressor [Streptomyces c... 64 2e-08
gi|15678242|ref|NP_275357.1| iron repressor [Methanothermob... 64 2e-08
gi|156740126|ref|YP_001430255.1| iron (metal) dependent rep... 63 2e-08
gi|146304764|ref|YP_001192080.1| FeoA family protein [Metal... 63 2e-08
gi|29375587|ref|NP_814741.1| iron-dependent repressor [Ente... 63 3e-08
gi|72160653|ref|YP_288310.1| iron dependent repressor [Ther... 63 3e-08
gi|42526731|ref|NP_971829.1| iron-dependent transcriptional... 63 3e-08
gi|94968894|ref|YP_590942.1| ABC transporter, ATPase subuni... 62 3e-08
gi|76258459|ref|ZP_00766114.1| Iron dependent repressor:Feo... 61 8e-08
gi|38233999|ref|NP_939766.1| diphtheria toxin repressor [Co... 61 8e-08
gi|53794448|gb|AAU93781.1| diphtheria toxin repressor [Cory... 61 8e-08
gi|84498530|ref|ZP_00997300.1| iron-dependent repressor, Dx... 61 8e-08
gi|144979|gb|AAA23301.1| diphtheria toxin repressor 61 8e-08
gi|1127152|pdb|1DPR|A Chain A, Diphtheria, Virulence, Dna-B... 61 9e-08
gi|53794452|gb|AAU93783.1| diphtheria toxin repressor [Cory... 61 9e-08
gi|9955138|pdb|1C0W|A Chain A, Crystal Structure Of The Cob... 61 9e-08
gi|90962452|ref|YP_536368.1| Iron-dependent repressor [Lact... 61 9e-08
gi|144981|gb|AAA23302.1| diphtheria toxin repressor 61 1e-07
gi|53794450|gb|AAU93782.1| diphtheria toxin repressor [Cory... 61 1e-07
gi|119961741|ref|YP_946806.1| putative iron-dependent repre... 61 1e-07
gi|29375105|ref|NP_814258.1| ferrous iron transport protein... 60 1e-07
gi|148642278|ref|YP_001272791.1| iron dependent transcripti... 60 1e-07
gi|138894991|ref|YP_001125444.1| Ferrous iron transport pro... 60 1e-07
gi|608593|gb|AAA91345.1| diphtheria toxin repressor 60 2e-07
gi|111220376|ref|YP_711170.1| Iron-dependent repressor [Fra... 60 2e-07
gi|116494321|ref|YP_806055.1| Mn-dependent transcriptional ... 60 2e-07
gi|82523899|emb|CAI78622.1| putative ferrous iron transport... 60 2e-07
gi|70727261|ref|YP_254177.1| hypothetical protein SH2262 [S... 59 3e-07
gi|119715026|ref|YP_921991.1| iron dependent repressor [Noc... 59 3e-07
gi|125624050|ref|YP_001032533.1| transcriptional regulator ... 59 4e-07
gi|50841968|ref|YP_055195.1| repressor [Propionibacterium a... 59 4e-07
gi|68229864|ref|ZP_00569054.1| Iron dependent repressor [Fr... 59 4e-07
gi|46445892|ref|YP_007257.1| putative ABC transporter perme... 59 5e-07
gi|15834960|ref|NP_296719.1| ABC transporter, permease prot... 59 5e-07
gi|116512096|ref|YP_809312.1| Mn-dependent transcriptional ... 59 5e-07
gi|16975074|pdb|1G3Y|A Chain A, Arg80ala Dtxr 59 5e-07
gi|91201944|emb|CAJ75004.1| conserved hypothetical protein ... 59 5e-07
gi|15897577|ref|NP_342182.1| Iron-dependent repressor [Sulf... 58 6e-07
gi|21222420|ref|NP_628199.1| iron dependent repressor [Stre... 58 6e-07
gi|152974428|ref|YP_001373945.1| FeoA family protein [Bacil... 58 7e-07
gi|84489257|ref|YP_447489.1| predicted metal-dependent tran... 58 8e-07
gi|89898375|ref|YP_515485.1| ABC transporter of metals [Chl... 58 8e-07
gi|56420019|ref|YP_147337.1| ferrous iron uptake system pro... 58 8e-07
gi|16118833|gb|AAL14619.1|AF417113_4 putative iron dependen... 58 9e-07
gi|156858480|gb|EDO51911.1| hypothetical protein BACUNI_044... 58 9e-07
gi|86157991|ref|YP_464776.1| Iron (metal) dependent repress... 58 9e-07
gi|49258436|pdb|1P92|A Chain A, Crystal Structure Of (H79a)... 57 1e-06
gi|15922357|ref|NP_378026.1| hypothetical diphtheria toxin ... 57 1e-06
gi|69244702|ref|ZP_00602966.1| Iron dependent repressor:Feo... 57 1e-06
gi|16975069|pdb|1G3S|A Chain A, Cys102ser Dtxr >gi|16975070... 57 1e-06
gi|156867185|gb|EDO60557.1| hypothetical protein CLOLEP_021... 57 1e-06
gi|30260862|ref|NP_843239.1| ferrous iron transport protein... 57 2e-06
gi|75761689|ref|ZP_00741634.1| Ferrous iron transport prote... 57 2e-06
gi|149370062|ref|ZP_01889913.1| Mn-dependent transcriptiona... 57 2e-06
gi|5542114|pdb|1BI1| Chain , Structure Of Apo- And Holo-D... 57 2e-06
gi|16752695|ref|NP_444962.1| ABC transporter, permease prot... 57 2e-06
gi|15618262|ref|NP_224547.1| Integral Membrane Protein [Chl... 57 2e-06
gi|81427994|ref|YP_394993.1| Putative metal(Iron)-dependent... 56 2e-06
gi|3891798|pdb|2TDX| Chain , Diphtheria Tox Repressor (C1... 56 3e-06
gi|89210787|ref|ZP_01189172.1| FeoA [Halothermothrix orenii... 56 3e-06
gi|77919546|ref|YP_357361.1| iron repressor, putative [Pelo... 56 3e-06
gi|62425787|ref|ZP_00380918.1| COG1321: Mn-dependent transc... 55 4e-06
gi|116621297|ref|YP_823453.1| iron (metal) dependent repres... 55 5e-06
gi|15678956|ref|NP_276073.1| iron repressor [Methanothermob... 55 6e-06
gi|92090162|ref|ZP_01275059.1| Iron dependent repressor:Feo... 55 7e-06
gi|134046009|ref|YP_001097495.1| iron dependent repressor [... 55 8e-06
gi|15988215|pdb|1FWZ|A Chain A, Glu20ala Dtxr 54 8e-06
gi|150403570|ref|YP_001330864.1| iron dependent repressor [... 54 9e-06
>gi|34540785|ref|NP_905264.1| iron dependent repressor, putative [Porphyromonas gingivalis W83]
gi|34397099|gb|AAQ66163.1| iron dependent repressor, putative [Porphyromonas gingivalis W83]
Length = 310
Score = 623 bits (1607), Expect = e-177, Method: Composition-based stats.
Identities = 310/310 (100%), Positives = 310/310 (100%)
Query: 1 MNLFSNLLFRFDVRRLSEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQ 60
MNLFSNLLFRFDVRRLSEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQ
Sbjct: 1 MNLFSNLLFRFDVRRLSEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQ 60
Query: 61 GYCLPPDSHLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQE 120
GYCLPPDSHLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQE
Sbjct: 61 GYCLPPDSHLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQE 120
Query: 121 RIAVRLGNPLFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIET 180
RIAVRLGNPLFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIET
Sbjct: 121 RIAVRLGNPLFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIET 180
Query: 181 IGFFRGAVFHLLRTDTDGVHLSFEGEQFLLPQEAAHNLTVMPCTDKGMIDLARKTVKLTT 240
IGFFRGAVFHLLRTDTDGVHLSFEGEQFLLPQEAAHNLTVMPCTDKGMIDLARKTVKLTT
Sbjct: 181 IGFFRGAVFHLLRTDTDGVHLSFEGEQFLLPQEAAHNLTVMPCTDKGMIDLARKTVKLTT 240
Query: 241 LRQGEEATIAGISKACRGANRRRLLDLGFVRGSRIAIDLTSPLGNPTAYVVRGTAIALRR 300
LRQGEEATIAGISKACRGANRRRLLDLGFVRGSRIAIDLTSPLGNPTAYVVRGTAIALRR
Sbjct: 241 LRQGEEATIAGISKACRGANRRRLLDLGFVRGSRIAIDLTSPLGNPTAYVVRGTAIALRR 300
Query: 301 DQARYILIYR 310
DQARYILIYR
Sbjct: 301 DQARYILIYR 310
>gi|148658588|ref|YP_001278793.1| iron dependent repressor [Roseiflexus sp. RS-1]
gi|148570698|gb|ABQ92843.1| iron dependent repressor [Roseiflexus sp. RS-1]
Length = 336
Score = 161 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 102/298 (34%), Positives = 156/298 (52%), Gaps = 6/298 (2%)
Query: 14 RRLSEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGY--CLPPDSHLT 71
R L ED LK + + E G + L+ L + +++ + QG + HLT
Sbjct: 36 RELVEDALKYLLNREHQGRHATPESLSGALALPRARSMRLIEKMEAQGLLETRGAELHLT 95
Query: 72 ESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLF 131
G ++AL V+R HRL E+YL++ + + H +A + EH L+ + + + +G P
Sbjct: 96 PEGERWALHVVRAHRLWERYLADEARMPLARVHDEAQRREHTLTAAQLDELEAAMGYPRR 155
Query: 132 DPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRGAVFHL 191
DPHGDPIP EG + V G+ P D+ R++H+EDEPA Y QI +G G V +
Sbjct: 156 DPHGDPIPNREGSLSDVAGIPLTAWPLDTPGRIVHLEDEPAIAYAQILAVGLRLGQVVRV 215
Query: 192 LRTDTDGVHLSFEGEQFLLPQEAAHNLTVMPCTDKGMIDLARK-TVKLTTLRQGEEATIA 250
L + + LS ++ L A N+T+ P T++ + AR + L+ + + A I
Sbjct: 216 LERTPERLVLSDGEHEYRLAPAVAVNVTLAPLTEE---EAARNHAIPLSDVPLHQSAEIV 272
Query: 251 GISKACRGANRRRLLDLGFVRGSRIAIDLTSPLGNPTAYVVRGTAIALRRDQARYILI 308
+ A +G RRRLLDLG G+ + +L + +P AY VRGT IALRRDQA I +
Sbjct: 273 ALDDALQGFTRRRLLDLGLTPGAVVYPELQNVFADPRAYRVRGTLIALRRDQADRIWV 330
>gi|153891487|ref|ZP_02012496.1| iron dependent repressor [Opitutaceae bacterium TAV2]
gi|151582430|gb|EDN45974.1| iron dependent repressor [Opitutaceae bacterium TAV2]
Length = 345
Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 97/239 (40%), Positives = 123/239 (51%), Gaps = 1/239 (0%)
Query: 70 LTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNP 129
L +GR+ AL ++R HRL+E L+ SG +P WH A EH L+ +E R+A +L NP
Sbjct: 93 LQPAGREIALLIMRAHRLVETRLARESGLQPERWHALAHAAEHRLTPDEVNRLADQLDNP 152
Query: 130 LFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRGAVF 189
FDPHGDPIPT EG EG + HIEDEP L+ ++ G + G F
Sbjct: 153 RFDPHGDPIPTREGRWPGAEGRALLAWNPGVSGVIEHIEDEPPSLFARLAQDGIYAGMRF 212
Query: 190 HLLRTDTDGVHLSFEGEQFLLPQEAAHNLTVMPCTDKGMIDLARKTVKLTTLRQGEEATI 249
L HL+ E + LP A + V P D + +L+ L G A +
Sbjct: 213 TLHALKPTACHLTIEARDYELPLALAAMIRVRPPLDSEQ-PVPPSASRLSDLTPGHTADV 271
Query: 250 AGISKACRGANRRRLLDLGFVRGSRIAIDLTSPLGNPTAYVVRGTAIALRRDQARYILI 308
+ C G R RLLDLGFV GSRI L SP P AY VRGT IALRR+Q +LI
Sbjct: 272 LLLLPGCIGVERSRLLDLGFVPGSRIEYALQSPFHGPAAYRVRGTLIALRREQVDQVLI 330
>gi|83816669|ref|YP_446151.1| iron dependent repressor, putative [Salinibacter ruber DSM 13855]
gi|83758063|gb|ABC46176.1| iron dependent repressor, putative [Salinibacter ruber DSM 13855]
Length = 217
Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats.
Identities = 68/181 (37%), Positives = 95/181 (52%), Gaps = 4/181 (2%)
Query: 18 EDTLKAIYSLEED-GLPVNADRLAA---LTGLKISNQQYILDLLHKQGYCLPPDSHLTES 73
ED LKA+Y LE+D G PV+ LA ++ SN LD L Y + LT+
Sbjct: 7 EDYLKALYKLEDDKGAPVSTGALAEAMDVSSASASNMIKRLDELEFLTYEAYEGATLTDP 66
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
GR AL+V+R HRLLE YL E G+ E H +A EH++S+ ++RI LG+P DP
Sbjct: 67 GRTVALEVLRHHRLLELYLKEVMGFSWDEIHEEAEILEHHISERFEDRIEEMLGHPERDP 126
Query: 134 HGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRGAVFHLLR 193
HG PIP +G V ++ +LP+ + H+ DE +L +E G GA +
Sbjct: 127 HGHPIPARDGSVDALPTRSLADLPEGDAASIDHVADEDGELLDLLEQRGLLPGATVEVAD 186
Query: 194 T 194
T
Sbjct: 187 T 187
>gi|76260419|ref|ZP_00768055.1| Iron dependent repressor:Iron dependent repressor:FeoA
[Chloroflexus aurantiacus J-10-fl]
gi|76164668|gb|EAO58812.1| Iron dependent repressor:Iron dependent repressor:FeoA
[Chloroflexus aurantiacus J-10-fl]
Length = 233
Score = 101 bits (251), Expect = 6e-20, Method: Composition-based stats.
Identities = 66/179 (36%), Positives = 97/179 (54%), Gaps = 15/179 (8%)
Query: 18 EDTLKAIYSLEEDGLPVN--------ADRLAALTGL-KISNQQYILDLLHKQGYCLPPDS 68
ED LKAIY L++ V R A++TG+ K + ++ QG L P
Sbjct: 18 EDYLKAIYLLQQQVGAVTTTLLGEQRGSRPASVTGMIKKLAEMNLVQHTPYQGVILTP-- 75
Query: 69 HLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
+G + AL+VIR HRLLE YL E GY E H +A + EH++S++ + RIA RLG
Sbjct: 76 ----AGERIALEVIRHHRLLELYLVEALGYSWDEVHEEAERLEHHISEKLEARIAERLGF 131
Query: 129 PLFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRGA 187
P FDPHGDPIP +G + + + +LP + R++ + D+ A+ R + +G GA
Sbjct: 132 PDFDPHGDPIPGIDGVLPTTRAIRLADLPLNQVARIVRVRDQAAERLRYLADLGLVPGA 190
>gi|118047649|ref|ZP_01516281.1| FeoA [Chloroflexus aggregans DSM 9485]
gi|117995883|gb|EAV10092.1| FeoA [Chloroflexus aggregans DSM 9485]
Length = 308
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 65/179 (36%), Positives = 95/179 (53%), Gaps = 15/179 (8%)
Query: 18 EDTLKAIYSLEEDGLPVN--------ADRLAALTGL-KISNQQYILDLLHKQGYCLPPDS 68
ED LKAIY L++ V R A++TG+ K + ++ QG L P
Sbjct: 91 EDYLKAIYLLQQQVGAVTTTLLGEQRGSRPASVTGMIKKLAEMNLVQHTPYQGVVLTP-- 148
Query: 69 HLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
+G + AL+VIR HRLLE YL E GY E H +A + EH++S++ + RIA RLG
Sbjct: 149 ----AGERIALEVIRHHRLLELYLVEALGYSWDEVHEEAERLEHHISEKLEARIAERLGY 204
Query: 129 PLFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRGA 187
P FDPHGDPIP +G + + ++P R++ + D+ A+ R + +G GA
Sbjct: 205 PDFDPHGDPIPGIDGVLPVTHAIRLADVPLHQAARIVRVRDQAAERLRYLADLGLVPGA 263
>gi|145294200|ref|YP_001137021.1| hypothetical protein cgR_0157 [Corynebacterium glutamicum R]
gi|57158014|dbj|BAD83988.1| putative regulatory protein [Corynebacterium glutamicum]
gi|140844120|dbj|BAF53119.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 232
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 75/219 (34%), Positives = 109/219 (49%), Gaps = 9/219 (4%)
Query: 12 DVRRLSEDTLKAIYSLEE-DGLPVNADRLAALTGLKISNQQYILDLLHKQG---YCLPPD 67
++ +++D LK I++ E G P+ A LAA G N + L QG Y
Sbjct: 5 EITPVAQDYLKVIWAATEWGGPPITATALAARMGTTTPNVSDTVKRLAAQGLVEYQPYKP 64
Query: 68 SHLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLG 127
LTE G KYA+ ++RRHRLLE +L+ GY E H +A + EH S+ ERI LG
Sbjct: 65 VMLTERGEKYAIAMVRRHRLLETFLATTLGYPWEEVHDEAERLEHAASETMIERIDALLG 124
Query: 128 NPLFDPHGDPIPTEEGEV-QSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRG 186
NP DPHGDPIPT G + +S++ + + YV +I I D + G
Sbjct: 125 NPATDPHGDPIPTATGHISRSIDAIRLTHVVPGDYV-IIRISDADSSQLAGFRRQEIVPG 183
Query: 187 AVFHLLRTD--TDGVHLS-FEGEQFLLPQEAAHNLTVMP 222
A+ ++ D D V L +G++ +L E A+ + V P
Sbjct: 184 AIVNVAGADPRQDRVLLKGADGKEVILTTEQANAIWVAP 222
>gi|113938714|ref|ZP_01424579.1| iron dependent repressor [Herpetosiphon aurantiacus ATCC 23779]
gi|113899610|gb|EAU18607.1| iron dependent repressor [Herpetosiphon aurantiacus ATCC 23779]
Length = 223
Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 67/185 (36%), Positives = 95/185 (51%), Gaps = 4/185 (2%)
Query: 18 EDTLKAIYSLEEDGLPVNADRLAALTGLK---ISNQQYILDLLHKQGYCLPPDSHLTESG 74
+D +KAIY+L+++ PV+ RLA+ G I+ L+ L Y LTE G
Sbjct: 8 QDYVKAIYTLQQEEAPVSNGRLASYFGFSAPTITEMLKKLESLELVDYQARYGVRLTEIG 67
Query: 75 RKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDPH 134
K AL++IR HRLLE YL + G E H +A EH LS+ +ERIA LG+P FDPH
Sbjct: 68 EKIALEMIRHHRLLELYLVQALGMSWDEVHDEAEVLEHVLSEALEERIAEYLGHPQFDPH 127
Query: 135 GDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRGAVFHLL-R 193
G PIP +G + + L + R++ +ED A R + +G V ++ R
Sbjct: 128 GSPIPARDGSIPQRDSCSLALLELNQIARIVEVEDRDAARLRYLADLGLTPNNVITIIAR 187
Query: 194 TDTDG 198
DG
Sbjct: 188 APFDG 192
>gi|119963034|ref|YP_948365.1| putative Iron dependent repressor [Arthrobacter aurescens TC1]
gi|119949893|gb|ABM08804.1| putative Iron dependent repressor [Arthrobacter aurescens TC1]
Length = 237
Score = 98.6 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 64/167 (38%), Positives = 89/167 (53%), Gaps = 4/167 (2%)
Query: 18 EDTLKAIYSLEE-DGLPVNADRLAALTGLKISNQQYILDLLHKQGYC-LPPDS--HLTES 73
ED +K IYS E P+ + +LA G+ S+ ++ L QG P S LT
Sbjct: 11 EDYVKVIYSYTEWQDKPITSSQLAQRLGVANSSVSEMVRKLKDQGLVDHQPYSAIRLTPQ 70
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
G + AL ++RRHRL+E YL E GY E H +A EH +SD ER++ +LG+P+ DP
Sbjct: 71 GMRLALSMVRRHRLIETYLVEELGYSWDEVHDEAEMLEHAVSDTFIERMSAKLGHPVRDP 130
Query: 134 HGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIET 180
HGDPIP+ +G V+ EL R+ I DE DL R + +
Sbjct: 131 HGDPIPSADGSVELPHAYRMIELDQGHSGRITRISDENPDLLRYLAS 177
>gi|72162065|ref|YP_289722.1| iron dependent repressor [Thermobifida fusca YX]
gi|71915797|gb|AAZ55699.1| iron dependent repressor [Thermobifida fusca YX]
Length = 229
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 67/154 (43%), Positives = 84/154 (54%), Gaps = 7/154 (4%)
Query: 18 EDTLKAIYSLEEDGL-PVNADRLAALTGLKISNQQYILDLLHKQG---YCLPPDSHLTES 73
ED +K IY L+E G PV R+A + S+ +L L + G + D LT +
Sbjct: 13 EDYVKVIYDLQERGSGPVTISRVAERLAVSNSSVSGMLRKLGELGLVDHQRYGDVRLTPT 72
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
G K AL V+RRHRL+E YL E GY E H +A EH +SD ERIA RLG+P DP
Sbjct: 73 GDKVALAVLRRHRLIELYLVEELGYSWDEVHDEAEVLEHVVSDRFVERIAERLGHPTVDP 132
Query: 134 HGDPIPTEEGEVQSVEG---VHADELPDDSYVRV 164
HGDPIPT +G V + E H D + VRV
Sbjct: 133 HGDPIPTSDGRVPTQETRLLAHVDPGSGGTIVRV 166
>gi|116671204|ref|YP_832137.1| iron (metal) dependent repressor, DtxR family [Arthrobacter sp.
FB24]
gi|116611313|gb|ABK04037.1| iron (metal) dependent repressor, DtxR family [Arthrobacter sp.
FB24]
Length = 237
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 64/165 (38%), Positives = 87/165 (52%), Gaps = 4/165 (2%)
Query: 18 EDTLKAIYSLEE-DGLPVNADRLAALTGLKISNQQYILDLLHKQGYC-LPPDSH--LTES 73
ED +K IYS E P+ + +LA G+ S+ ++ L QG P S LT
Sbjct: 11 EDYVKVIYSFTEWQDKPITSSQLALRLGVANSSVSEMVRKLKDQGLVDHKPYSAITLTAD 70
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
G + AL ++RRHRL+E YL + GY E H +A EH +SD ER+A +LGNPL DP
Sbjct: 71 GVRLALSMVRRHRLIETYLVQELGYSWDEVHDEAELLEHAVSDTFIERMAGKLGNPLRDP 130
Query: 134 HGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQI 178
HGDPIP +G V EL + R+ I D+ +L R +
Sbjct: 131 HGDPIPAADGTVHMPHAHRMSELDEGHTGRITRISDDNPELLRYL 175
>gi|134102468|ref|YP_001108129.1| iron (metal) dependent repressor, DtxR family [Saccharopolyspora
erythraea NRRL 2338]
gi|133915091|emb|CAM05204.1| iron (metal) dependent repressor, DtxR family [Saccharopolyspora
erythraea NRRL 2338]
Length = 224
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 61/164 (37%), Positives = 87/164 (53%), Gaps = 3/164 (1%)
Query: 18 EDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQG---YCLPPDSHLTESG 74
ED ++AIY L E G+PV L GL S+ +++ L + G + LT G
Sbjct: 10 EDYVRAIYGLSERGVPVTNATLTQRLGLSPSSVSGMINKLSQLGLVTHVRYRSVELTPQG 69
Query: 75 RKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDPH 134
R+ A V+RRHRL+E +L E Y E H +A EH +SDE E IA +LG+P DPH
Sbjct: 70 RRLAYDVLRRHRLIELFLVEELDYTWDEVHREADALEHAVSDELVEHIAAKLGHPTHDPH 129
Query: 135 GDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQI 178
GDPIPT +G V+ D++ + V + D ++L R +
Sbjct: 130 GDPIPTADGVVEKPATKLLDQVEPGTVGTVARVWDTDSELLRYL 173
>gi|55980723|ref|YP_144020.1| transcriptional repressor [Thermus thermophilus HB8]
gi|55772136|dbj|BAD70577.1| transcriptional repressor [Thermus thermophilus HB8]
Length = 219
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 76/209 (36%), Positives = 107/209 (51%), Gaps = 6/209 (2%)
Query: 18 EDTLKAIYSLEED-GLPVNADRLAALTGLK---ISNQQYILDLLHKQGYCLPPDSHLTES 73
ED LK ++ LEE G PV LA +K ++ L L + + LTE
Sbjct: 11 EDYLKHLFLLEEALGGPVPTQALAERLSVKPPSVTEMLKKLKALGLLEHEPYRGARLTER 70
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
GRK AL+V+R HRLLE YL + GY E H +A + EH +S++ +ERIA LG+P FDP
Sbjct: 71 GRKVALEVLRHHRLLEAYLHQALGYGWEEVHQEAERLEHVISEDLEERIAEYLGHPPFDP 130
Query: 134 HGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRGAVFHLLR 193
HGDPIPT++ + S + + E P RV + + +G G +L
Sbjct: 131 HGDPIPTKDLTLPSSKALPLTEAP-LGRARVARALAQDRGTLNLLARLGLVPGKPLRILE 189
Query: 194 TDTDGVHLSFEGEQFLLPQEAAHNLTVMP 222
+GV + EGE +LLP+ A + V P
Sbjct: 190 RG-EGVRVEVEGEVYLLPRALAQAVGVEP 217
>gi|46198706|ref|YP_004373.1| transcriptional repressor [Thermus thermophilus HB27]
gi|46196329|gb|AAS80746.1| transcriptional repressor [Thermus thermophilus HB27]
Length = 219
Score = 95.1 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 75/209 (35%), Positives = 108/209 (51%), Gaps = 6/209 (2%)
Query: 18 EDTLKAIYSLEED-GLPVNADRLAALTGLKISNQQYILDLLHKQG---YCLPPDSHLTES 73
ED LKA+ LE + G P + LA G++ + +L L G Y + LT
Sbjct: 11 EDYLKALLLLELEEGRPASTQALAQRLGVRPPSVTEMLKKLAGLGLVQYTPYQGASLTPL 70
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
GR+ ALK++R HRLLE YL + GY E H +A + EH +S++ +ERIA LG+P FDP
Sbjct: 71 GRQIALKILRHHRLLEAYLHQALGYGWEEVHQEAERLEHVISEDLEERIAEYLGHPPFDP 130
Query: 134 HGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRGAVFHLLR 193
HGDPIPT++ + S + + E P RV + + +G G +L
Sbjct: 131 HGDPIPTKDLTLPSSKALPLTEAP-LGRARVARALAQDRGTLNLLARLGLVPGKPLRILE 189
Query: 194 TDTDGVHLSFEGEQFLLPQEAAHNLTVMP 222
+GV + EGE +LLP+ A + V P
Sbjct: 190 RG-EGVRVEVEGEVYLLPRALAQAVGVEP 217
>gi|62424544|ref|ZP_00379689.1| COG1321: Mn-dependent transcriptional regulator [Brevibacterium
linens BL2]
Length = 240
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 71/184 (38%), Positives = 94/184 (51%), Gaps = 12/184 (6%)
Query: 12 DVRRLSEDTLKAIYSLEE-DGLPVNADRLAALTGLKISNQQYILDLLHKQG------YCL 64
+V +S+D LKAI+S +E G P+ A LA G +N +L L + G Y L
Sbjct: 5 EVSEVSQDYLKAIWSAQEWGGEPMTATELANRFGTTKANVTEVLKRLDELGLIVRVPYRL 64
Query: 65 PPDSHLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAV 124
P LT +G K AL ++RRHRLLE +L E GY E H +A EH SD +RI
Sbjct: 65 PV---LTPAGEKVALSMVRRHRLLETFLVESLGYGWDEVHDEAEILEHAASDRLVDRIDA 121
Query: 125 RLGNPLFDPHGDPIPTEEGEVQSVE-GVHADELPDDSYVRVIHIEDEPADLYRQIETIGF 183
LG P DPHGDPIP EG+++S + + E SY VI + D + + G
Sbjct: 122 FLGRPQADPHGDPIPDPEGQIESHDSSILLTEAGPGSY-EVIRVSDADPAVLAHLAEAGV 180
Query: 184 FRGA 187
GA
Sbjct: 181 VPGA 184
>gi|88855886|ref|ZP_01130548.1| putative transcriptional regulator [marine actinobacterium
PHSC20C1]
gi|88814753|gb|EAR24613.1| putative transcriptional regulator [marine actinobacterium
PHSC20C1]
Length = 233
Score = 92.8 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 68/194 (35%), Positives = 96/194 (49%), Gaps = 16/194 (8%)
Query: 17 SEDTLKAIYSLEE-DGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDSH------ 69
+++ LKA++ L E PV A +A TG +S+ + L QG+ +H
Sbjct: 10 TQNYLKAVWGLSEWSDAPVTATVIAEKTGFTLSSVSDAVRRLTDQGFL----NHAKYGSI 65
Query: 70 -LTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
LT GR +A+ ++RRHRL+E +L GY + H +A EH +SD ERI L +
Sbjct: 66 ALTNIGRAHAVAMVRRHRLIESFLVSVLGYGWDQVHDEAENLEHAVSDFMVERIDEFLEH 125
Query: 129 PLFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRGAV 188
P DPHGDPIP+ +G V + V + DS V V I DE +L + E RG V
Sbjct: 126 PTRDPHGDPIPSADGTVTIPDAVQLSRVTPDSIVVVERISDEDPELLKFFEE----RGIV 181
Query: 189 FHLLRTDTDGVHLS 202
F T + G S
Sbjct: 182 FSATLTVSAGAPYS 195
>gi|78485249|ref|YP_391174.1| Iron dependent repressor [Thiomicrospira crunogena XCL-2]
gi|78363535|gb|ABB41500.1| iron (metal) dependent repressor, DtxR family [Thiomicrospira
crunogena XCL-2]
Length = 218
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 71/214 (33%), Positives = 106/214 (49%), Gaps = 14/214 (6%)
Query: 18 EDTLKAIYSLEED-----GLPVNA--DRLAALTGLKISNQQYILDLLHKQGYCLPP--DS 68
ED LK IY LEE+ G+ +A +RLA ++ +SN + L K+ P
Sbjct: 7 EDYLKIIYKLEEENESDKGVSTSAIAERLA-ISQASVSNM--LKKLADKKMIQYEPYYGV 63
Query: 69 HLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
LT GRK AL +IRRHR+LE +L E GY+ E +A EH +SD+ R+ LG
Sbjct: 64 SLTAKGRKVALNMIRRHRILELFLVERLGYQWDEVDEEAEILEHAVSDKLANRMWEELGQ 123
Query: 129 PLFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFR--G 186
P DPHG PIP E+GE+ + E+ + +V+ I++ + R + +IG + G
Sbjct: 124 PTQDPHGSPIPNEKGEMVQPKMASLAEIEAPAKAKVVRIQNRSPEELRYLFSIGLVKDAG 183
Query: 187 AVFHLLRTDTDGVHLSFEGEQFLLPQEAAHNLTV 220
+ H + + GEQ L A ++ V
Sbjct: 184 VIIHQKAPFEGPLSIEINGEQHALDYRLAQSIFV 217
>gi|148273712|ref|YP_001223273.1| hypothetical protein CMM_2528 [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147831642|emb|CAN02610.1| sirR [Clavibacter michiganensis subsp. michiganensis NCPPB 382]
Length = 224
Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 63/170 (37%), Positives = 90/170 (52%), Gaps = 4/170 (2%)
Query: 17 SEDTLKAIYSLEE-DGLPVNADRLAALTGLKISNQQYILDLLHKQGYC--LPPDS-HLTE 72
++D LK I+S E P+ RLA G++ + + L QG P S LT+
Sbjct: 10 AQDYLKLIWSATEWTDQPMTVSRLADRLGIRPATASDGIRRLTAQGLVEHRPYGSIELTD 69
Query: 73 SGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFD 132
GR++A++++RRHRLLE +L E GY E H +A EH +SD+ RI LG+P D
Sbjct: 70 DGRRHAIQMVRRHRLLETFLVEVLGYGWDEVHDEAEVLEHAVSDDFVARIDQHLGHPSRD 129
Query: 133 PHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIG 182
PHGDPIP+ +GE + + D +RV I DE L R++ G
Sbjct: 130 PHGDPIPSADGEPHLPDATVLADAAADRPMRVRRISDEDPRLLRELAEHG 179
>gi|116662114|ref|YP_829169.1| iron (metal) dependent repressor, DtxR family [Arthrobacter sp.
FB24]
gi|116612866|gb|ABK05588.1| iron (metal) dependent repressor, DtxR family [Arthrobacter sp.
FB24]
Length = 224
Score = 87.8 bits (216), Expect = 7e-16, Method: Composition-based stats.
Identities = 60/176 (34%), Positives = 87/176 (49%), Gaps = 4/176 (2%)
Query: 12 DVRRLSEDTLKAIYSLEE-DGLPVNADRLAALTGLKISNQQYILDLLHKQGYCL--PPDS 68
D+ ++D LK I+S E P+ +A G++ S + L KQG P S
Sbjct: 5 DLSSTAQDYLKLIWSATEWSATPMTVSSIAERLGVRPSTASDGIKKLVKQGLVTHAPYGS 64
Query: 69 -HLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLG 127
LT++GR++A+ ++RRHRLLE +L + GY E H +A EH +S++ ERI +LG
Sbjct: 65 IELTDAGREHAVAMVRRHRLLETFLVQMLGYGWDEVHDEAEILEHAVSEKLIERIDQKLG 124
Query: 128 NPLFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGF 183
+P DPHGDPIPT EG V + I D + R +G
Sbjct: 125 HPTRDPHGDPIPTPEGHPHLPAATQLSAADTGRAVEITRISDADPQMLRYFTELGL 180
>gi|120403338|ref|YP_953167.1| iron dependent repressor [Mycobacterium vanbaalenii PYR-1]
gi|119956156|gb|ABM13161.1| iron dependent repressor [Mycobacterium vanbaalenii PYR-1]
Length = 248
Score = 87.8 bits (216), Expect = 7e-16, Method: Composition-based stats.
Identities = 58/175 (33%), Positives = 85/175 (48%), Gaps = 4/175 (2%)
Query: 12 DVRRLSEDTLKAIYSLEE-DGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPD--- 67
D+ +++D LK I++ +E V+ LA G+ S + L QG
Sbjct: 12 DLSTVAQDYLKVIWTAQEWSREKVSTKLLAERIGVSASTASESIRKLADQGLVDHEKYGA 71
Query: 68 SHLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLG 127
LTE+GR+ AL ++RRHRL+E +L GY E H +A EH +SD +RI +LG
Sbjct: 72 VTLTEAGRRAALAMVRRHRLMETFLVNELGYSWDEVHDEAEVLEHAVSDRMLDRIDAKLG 131
Query: 128 NPLFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIG 182
P DPHGDPIP +G V + + D V I D ++ R + +G
Sbjct: 132 YPTRDPHGDPIPAADGRVPTPPARQLSDCQDGEAGTVARISDADPEMLRYFDAVG 186
>gi|68536571|ref|YP_251276.1| manganese-dependent repressor MntR [Corynebacterium jeikeium K411]
gi|68264170|emb|CAI37658.1| manganese-dependent repressor MntR [Corynebacterium jeikeium K411]
Length = 238
Score = 87.8 bits (216), Expect = 8e-16, Method: Composition-based stats.
Identities = 64/179 (35%), Positives = 87/179 (48%), Gaps = 4/179 (2%)
Query: 12 DVRRLSEDTLKAIYSLEE-DGLPVNADRLAALTGLKISNQQYILDLLHKQG---YCLPPD 67
D+ S+D LK I+ L+E G V+ LA + S + L QG + D
Sbjct: 5 DLPERSQDYLKKIFDLQEWSGGGVSLSVLARHMDQRPSTASEAIKRLAAQGLVDHAPYGD 64
Query: 68 SHLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLG 127
L+E+GRK AL ++RRHRL+E +L H GY E H +A EH +S+ +RIA L
Sbjct: 65 IELSEAGRKIALAMVRRHRLIETFLCNHLGYGLDEVHDEAEVLEHAVSETFVDRIASLLN 124
Query: 128 NPLFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRG 186
NP DPHGDPIP E G + + + + V I D A L R + G G
Sbjct: 125 NPTRDPHGDPIPDEGGHIPASSAFLLSDAHTGEQLIVDRISDRDAALVRYLTEHGVLPG 183
>gi|145224606|ref|YP_001135284.1| iron dependent repressor [Mycobacterium gilvum PYR-GCK]
gi|145217092|gb|ABP46496.1| iron dependent repressor [Mycobacterium gilvum PYR-GCK]
Length = 242
Score = 87.4 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 59/179 (32%), Positives = 87/179 (48%), Gaps = 12/179 (6%)
Query: 12 DVRRLSEDTLKAIYSLEE-DGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDSH- 69
D+ +++D LK I++ +E V+ LA G+ S + L QG H
Sbjct: 12 DLSTVAQDYLKVIWTAQEWSHEKVSTKLLADRIGVSASTASESIRKLADQGLV----DHE 67
Query: 70 ------LTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIA 123
LT++GR+ AL ++RRHRL+E +L GY E H +A EH +SD +RI
Sbjct: 68 KYGAVTLTDAGRRAALAMVRRHRLMETFLVNELGYGWDEVHDEAEILEHAVSDRMLDRID 127
Query: 124 VRLGNPLFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIG 182
+LG P DPHGDPIP +G+V + D V I D ++ R +T+G
Sbjct: 128 AKLGYPTRDPHGDPIPAADGKVPTPPARQLSACQDGEAGTVARISDADPEMLRYFDTVG 186
>gi|108799064|ref|YP_639261.1| iron (metal) dependent repressor, DtxR family [Mycobacterium sp.
MCS]
gi|119868179|ref|YP_938131.1| iron dependent repressor [Mycobacterium sp. KMS]
gi|126434667|ref|YP_001070358.1| iron dependent repressor [Mycobacterium sp. JLS]
gi|108769483|gb|ABG08205.1| iron (metal) dependent repressor, DtxR family [Mycobacterium sp.
MCS]
gi|119694268|gb|ABL91341.1| iron dependent repressor [Mycobacterium sp. KMS]
gi|126234467|gb|ABN97867.1| iron dependent repressor [Mycobacterium sp. JLS]
Length = 240
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 59/179 (32%), Positives = 88/179 (49%), Gaps = 12/179 (6%)
Query: 12 DVRRLSEDTLKAIYSLEE-DGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDSH- 69
D+ +++D LK I++ +E V+ LA G+ S + L QG +H
Sbjct: 11 DLTTVAQDYLKTIWTAQEWSHEKVSTKLLAERIGVSASTASESIRKLADQGLV----NHE 66
Query: 70 ------LTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIA 123
LT++GR AL+++RRHRL+E +L GY E H +A EH +SD RI
Sbjct: 67 KYGAVTLTDAGRHAALQMVRRHRLMETFLVNELGYSWDEVHDEAEVLEHAVSDLMLTRID 126
Query: 124 VRLGNPLFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIG 182
+LG+P DPHGDPIP +G V + E D V I D ++ R +++G
Sbjct: 127 AKLGHPTRDPHGDPIPAADGRVPTPPARQLSECEDGDAGTVARISDADPEMLRYFDSVG 185
>gi|118473748|ref|YP_886989.1| iron repressor protein [Mycobacterium smegmatis str. MC2 155]
gi|118175035|gb|ABK75931.1| iron repressor protein [Mycobacterium smegmatis str. MC2 155]
Length = 236
Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 57/175 (32%), Positives = 88/175 (50%), Gaps = 4/175 (2%)
Query: 12 DVRRLSEDTLKAIYSLEE-DGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPD--- 67
D+ +++D LK I++ +E V+ LA G+ S + L QG
Sbjct: 9 DLSSVAQDYLKVIWTAQEWSREKVSTKLLAERIGVSASTASESIRKLADQGLVHHEKYGA 68
Query: 68 SHLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLG 127
LT++GR+ AL ++RRHRL+E +L + GY E H +A EH +SD +RI +LG
Sbjct: 69 VTLTDAGRRAALAMVRRHRLMETFLVQELGYGWDEVHDEAEILEHAVSDRMLDRIDAKLG 128
Query: 128 NPLFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIG 182
+P DPHGDPIP +G+V + D V I D ++ R +++G
Sbjct: 129 HPTRDPHGDPIPAADGQVPTPPARQLSVCQDGDAGTVARISDADPEMLRYFDSVG 183
>gi|15789756|ref|NP_279580.1| SirR [Halobacterium sp. NRC-1]
gi|10580136|gb|AAG19060.1| transcription repressor [Halobacterium sp. NRC-1]
Length = 233
Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 74/220 (33%), Positives = 107/220 (48%), Gaps = 16/220 (7%)
Query: 18 EDTLKAIYSLEEDGLPVNADRLAA----LTGLKISNQQYILD---LLHKQGYCLPPDSHL 70
ED LK+IY+LE + P A A +T +++ L+ L+ ++ Y L
Sbjct: 15 EDYLKSIYNLEREHEPPIATSTIAEYLDVTPPTVTSMAEKLESRGLIEREKYA---GVEL 71
Query: 71 TESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPL 130
T G A++VIR HRLLE +L+ H Y+ E H +A EH++S+E ++R+A +LG+P
Sbjct: 72 TPDGETVAVEVIRHHRLLESFLATHLDYDWDEVHDEADALEHHISEEFEDRLAEKLGDPT 131
Query: 131 FDPHGDPIPT---EEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRGA 187
DPHGDPIP E E E V AD D+ V V D D R + G G
Sbjct: 132 VDPHGDPIPNADLEPPEHPDTE-VLADHAEGDALV-VARASDRNTDELRYLADAGVQPGT 189
Query: 188 VFHLLRTDTDGVH-LSFEGEQFLLPQEAAHNLTVMPCTDK 226
+ G+ + +GE LP+ A L V P D+
Sbjct: 190 ELTVTEHAPIGLFVVEIDGEAVHLPERVAETLEVRPAADE 229
>gi|154509235|ref|ZP_02044877.1| hypothetical protein ACTODO_01757 [Actinomyces odontolyticus ATCC
17982]
gi|153798869|gb|EDN81289.1| hypothetical protein ACTODO_01757 [Actinomyces odontolyticus ATCC
17982]
Length = 222
Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 69/204 (33%), Positives = 95/204 (46%), Gaps = 6/204 (2%)
Query: 18 EDTLKAIYSLEEDGLP-VNADRLAALTGLKISNQQYILDLLHKQGYCLPPD---SHLTES 73
ED LK ++S EE G V ++ G+ S + L +QG LT
Sbjct: 13 EDILKLVWSAEEAGRDGVKPKDVSEHMGVVPSTATENIQRLARQGLVTHERYGRVRLTPQ 72
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
GR AL ++RRHRLLE YL E G+ E H +A EH +SD +R+ LG P DP
Sbjct: 73 GRAIALGMVRRHRLLETYLHEALGFSWDEVHEEAEILEHAVSDRLLDRLDRVLGYPSRDP 132
Query: 134 HGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRGAVFHLLR 193
HGD IP +G V G D L + V+ + D + R + G GA ++
Sbjct: 133 HGDLIPRADGSSDDVSGSPLDALDGTAGGIVVRLPDRDPEALRAWKEAGLVPGARVAVVA 192
Query: 194 TDTDGVHLSFEGEQFLL--PQEAA 215
+D GV + E Q LL P +A+
Sbjct: 193 SDAGGVTVLLEDGQMLLLDPAQAS 216
>gi|62425392|ref|ZP_00380526.1| COG1321: Mn-dependent transcriptional regulator [Brevibacterium
linens BL2]
Length = 209
Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 66/200 (33%), Positives = 94/200 (47%), Gaps = 8/200 (4%)
Query: 33 PVNADRLAALTGLKISNQQYILDLLHKQGYC--LPPDS-HLTESGRKYALKVIRRHRLLE 89
PV LA G++ S + L +G P S LT GR YAL ++RRHRL+E
Sbjct: 8 PVTTTALAQKVGVRQSTTSDAIRKLSDEGLVAHTPYGSIALTAQGRVYALAMVRRHRLIE 67
Query: 90 KYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDPHGDPIPTEEGEVQSVE 149
+L E GY + H +A EH +SD +RIA L +P DPHGDPIP +G +
Sbjct: 68 TFLVEVLGYTWDQVHNEAETLEHAVSDFMVDRIAEHLDHPDRDPHGDPIPAADGTIDRPA 127
Query: 150 GVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRGAVFHLLR----TDTDGVHLS-FE 204
+ + S VRV I D +L + + G G+ F +D+ +HL
Sbjct: 128 AIPLTHVGTGSRVRVERISDSDPNLLQFLAEYGIHVGSYFSTEAGPPFSDSIVIHLEGGN 187
Query: 205 GEQFLLPQEAAHNLTVMPCT 224
G L + A+ + V PC+
Sbjct: 188 GAGVTLGRTASDAMWVSPCS 207
>gi|15807523|ref|NP_296259.1| iron dependent repressor, putative [Deinococcus radiodurans R1]
gi|6460364|gb|AAF12080.1|AE002083_4 iron dependent repressor, putative [Deinococcus radiodurans R1]
Length = 232
Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 62/183 (33%), Positives = 91/183 (49%), Gaps = 4/183 (2%)
Query: 17 SEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQG---YCLPPDSHLTES 73
+ED LK +Y L + G V+ LAA G+ ++ +L L +QG + + LT
Sbjct: 9 AEDYLKHLYGLGQSG-KVSTQALAAALGVAPASVTGMLRKLTEQGLVSHAPYQGARLTAE 67
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
G + AL+V+R HRLLE +L G E H +A EH LS+ + RIA LG+P DP
Sbjct: 68 GERVALEVLRHHRLLELFLHRALGVPLDEVHDEAEALEHALSERLEARIAAWLGDPTHDP 127
Query: 134 HGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRGAVFHLLR 193
HGDPIPT EGE+ + +L + + + D A+ R + GA +
Sbjct: 128 HGDPIPTLEGELPARAERRLSQLAPGDHAVIARVPDGDAEQLRTLVGARLTPGARLQIRS 187
Query: 194 TDT 196
D+
Sbjct: 188 VDS 190
>gi|118465260|ref|YP_882856.1| iron repressor protein [Mycobacterium avium 104]
gi|118166547|gb|ABK67444.1| iron repressor protein [Mycobacterium avium 104]
Length = 234
Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 61/175 (34%), Positives = 87/175 (49%), Gaps = 8/175 (4%)
Query: 16 LSEDTLKAIYSLEE---DGLP--VNADRLAALTGLKISNQQYILDLLHKQGYCLPPD--- 67
+ +D LKAI++ +E +G P V+ LA G+ S + L +QG
Sbjct: 13 VGQDYLKAIWNAQEWSPEGAPQKVSTKMLAEKIGVSASTASESIRKLAEQGLVDHEKYGA 72
Query: 68 SHLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLG 127
LTE+GR+ AL+++RRHRLLE +L GY E H +A EH +SD RI +LG
Sbjct: 73 VTLTEAGRRAALEMVRRHRLLETFLVNELGYAWDEVHDEAEVLEHAVSDRLVARIDAKLG 132
Query: 128 NPLFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIG 182
P DPHGDPIP +G+V + D V I D +++ R +G
Sbjct: 133 FPQRDPHGDPIPATDGQVPTPPARQLWACGDGDTGTVARISDADSEMLRYFTDVG 187
>gi|68552067|ref|ZP_00591460.1| Iron dependent repressor:FeoA [Prosthecochloris aestuarii DSM 271]
gi|68241190|gb|EAN23458.1| Iron dependent repressor:FeoA [Prosthecochloris aestuarii DSM 271]
Length = 239
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 3/175 (1%)
Query: 21 LKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPP---DSHLTESGRKY 77
L ++ L E G V+ LA TG +S + L ++GY L L+ G +Y
Sbjct: 21 LLTVFRLVERGGEVSISHLAEATGHSMSTVSEKVRRLTRRGYLLHEWRGAVTLSAEGWRY 80
Query: 78 ALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDPHGDP 137
A +++R+ RL+E +L +GY + H AC+ EH +SD + + L P DPHG P
Sbjct: 81 AGRLLRKRRLIETFLVCQAGYNVYDVHVDACRLEHVISDRLTDALERMLDYPRHDPHGHP 140
Query: 138 IPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRGAVFHLL 192
IP +EG + + V L + + V+ + E + + ++ +GF G F LL
Sbjct: 141 IPDKEGVISAAYTVSLTVLDEGCHAEVVSLNSEDMERLKYLDELGFSPGVTFRLL 195
>gi|86131327|ref|ZP_01049926.1| Iron dependent repressor [Cellulophaga sp. MED134]
gi|85818738|gb|EAQ39898.1| Iron dependent repressor [Dokdonia donghaensis MED134]
Length = 217
Score = 85.5 bits (210), Expect = 4e-15, Method: Composition-based stats.
Identities = 67/211 (31%), Positives = 107/211 (50%), Gaps = 10/211 (4%)
Query: 18 EDTLKAIYSLE---EDGLPVNADRLAALTGLKISNQQYILDLLHKQG---YCLPPDSHLT 71
E+ LKAIY LE + G+ NA +A K S+ ++ L +G Y + LT
Sbjct: 7 ENYLKAIYHLEAIAKHGVSTNA--IAGEMETKPSSVTDMVKKLADKGLVNYVKYKGTTLT 64
Query: 72 ESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLF 131
E GRK AL V+R+HR+ E +L E ++ E H A + EH S E R+ L P +
Sbjct: 65 EKGRKAALGVVRKHRIWEVFLLETLDFQWDEVHDIAEQLEHIKSQELINRLDKFLDYPDY 124
Query: 132 DPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRGAVFHL 191
DPHGDPIP + G ++S E EL + +++ + + D + ++ G+ +
Sbjct: 125 DPHGDPIPDKNGNIKSAEKKLLAELKKGNQGQLVGVRETSPDFLQFLDKRSIAIGSKIKV 184
Query: 192 LRTD-TDG-VHLSFEGEQFLLPQEAAHNLTV 220
L + DG + + +GEQF + ++ A NL +
Sbjct: 185 LGKEFFDGSMVIQVQGEQFFISKKIAENLYI 215
>gi|15609925|ref|NP_217304.1| PROBABLE TRANSCRIPTIONAL REPRESSOR SIRR [Mycobacterium tuberculosis
H37Rv]
gi|15842326|ref|NP_337363.1| iron repressor protein [Mycobacterium tuberculosis CDC1551]
gi|148662630|ref|YP_001284153.1| iron repressor protein [Mycobacterium tuberculosis H37Ra]
gi|148823976|ref|YP_001288730.1| transcriptional repressor sirR [Mycobacterium tuberculosis F11]
gi|2624310|emb|CAA15583.1| PROBABLE TRANSCRIPTIONAL REPRESSOR SIRR [Mycobacterium tuberculosis
H37Rv]
gi|13882622|gb|AAK47177.1| iron repressor protein [Mycobacterium tuberculosis CDC1551]
gi|134150952|gb|EBA42997.1| transcriptional repressor sirR [Mycobacterium tuberculosis str.
Haarlem]
gi|148506782|gb|ABQ74591.1| iron repressor protein [Mycobacterium tuberculosis H37Ra]
gi|148722503|gb|ABR07128.1| transcriptional repressor sirR [Mycobacterium tuberculosis F11]
Length = 228
Score = 85.1 bits (209), Expect = 5e-15, Method: Composition-based stats.
Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 4/175 (2%)
Query: 12 DVRRLSEDTLKAIYSLEE-DGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPD--- 67
D+ +++D LK I++ +E V+ LA G+ S + L +QG
Sbjct: 9 DLSAVAQDYLKVIWTAQEWSQDKVSTKMLAERIGVSASTASESIRKLAEQGLVDHEKYGA 68
Query: 68 SHLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLG 127
LT+SGR+ AL ++RRHRLLE +L GY E H +A EH +SD RI +LG
Sbjct: 69 VTLTDSGRRAALAMVRRHRLLETFLVNELGYRWDEVHDEAEVLEHAVSDRLMARIDAKLG 128
Query: 128 NPLFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIG 182
P DPHGDPIP +G+V + D V I D + R +IG
Sbjct: 129 FPQRDPHGDPIPGADGQVPTPPARQLWACRDGDTGTVARISDADPQMLRYFASIG 183
>gi|118617700|ref|YP_906032.1| transcriptional repressor SirR [Mycobacterium ulcerans Agy99]
gi|118569810|gb|ABL04561.1| transcriptional repressor SirR [Mycobacterium ulcerans Agy99]
Length = 230
Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 58/171 (33%), Positives = 85/171 (49%), Gaps = 4/171 (2%)
Query: 16 LSEDTLKAIYSLEE-DGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPD---SHLT 71
+++D LK I++ +E V+ LA G+ S + L +QG LT
Sbjct: 13 VAQDYLKVIWTAQEWSRERVSTKMLAEKIGVSASTASESIRKLAEQGLVDHEKYGAVTLT 72
Query: 72 ESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLF 131
+SGR+ AL ++RRHRLLE +L GY E H +A EH +SD RI +LG P
Sbjct: 73 DSGRRAALAMVRRHRLLETFLVNELGYGWDEVHDEAEVLEHAVSDRLVTRIDAKLGFPRR 132
Query: 132 DPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIG 182
DPHGDPIP+ +G+V + D V I D ++ R +++G
Sbjct: 133 DPHGDPIPSSDGQVPTPPARQLWACRDGDTATVARISDADPEILRYFDSVG 183
>gi|152964950|ref|YP_001360734.1| iron dependent repressor [Kineococcus radiotolerans SRS30216]
gi|151359467|gb|ABS02470.1| iron dependent repressor [Kineococcus radiotolerans SRS30216]
Length = 251
Score = 84.3 bits (207), Expect = 8e-15, Method: Composition-based stats.
Identities = 59/169 (34%), Positives = 78/169 (46%), Gaps = 4/169 (2%)
Query: 18 EDTLKAIYSLEE-DGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPP---DSHLTES 73
ED LK +Y+ E + LA G+ S + L G LTE
Sbjct: 38 EDCLKTVYAAGEWSDAKITLSMLAQTMGVSASTASEAVRKLTDAGLLRHERYGGVELTEE 97
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
GR AL V+RRHRLLE +L GY E H +A EH +SD +R+ RLG+P DP
Sbjct: 98 GRTRALAVVRRHRLLETFLVADLGYSWDEVHEEAEVLEHVVSDRMLDRLDARLGHPERDP 157
Query: 134 HGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIG 182
HGDPIP +G V + ++P+ V I D D+ R +G
Sbjct: 158 HGDPIPRPDGTVPRPGAHNLSDVPEGGTGVVARISDADPDVLRYFAELG 206
>gi|110667522|ref|YP_657333.1| transcription regulator SirR [Haloquadratum walsbyi DSM 16790]
gi|109625269|emb|CAJ51691.1| transcription regulator SirR [Haloquadratum walsbyi DSM 16790]
Length = 315
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 57/132 (43%), Positives = 74/132 (56%), Gaps = 10/132 (7%)
Query: 18 EDTLKAIYSLE-EDGLPVN----ADRLAALTGLKISNQQYILD--LLHKQGYCLPPDSHL 70
ED LK+IY L+ E G PV+ AD L S + + D LL + Y L
Sbjct: 7 EDYLKSIYRLQAEKGPPVSTSAVADTLEKTPATVTSMFETLTDRELLIYEKY---EGVEL 63
Query: 71 TESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPL 130
T G AL VIRRHRLLE YL++ GY+ SE H +A EH++S+ + R+A L +P
Sbjct: 64 TTEGETVALAVIRRHRLLESYLADQLGYKWSEVHGEADALEHHISEVFERRVAAALDDPQ 123
Query: 131 FDPHGDPIPTEE 142
DPHGDPIPT +
Sbjct: 124 VDPHGDPIPTAD 135
>gi|55377375|ref|YP_135225.1| transcription repressor [Haloarcula marismortui ATCC 43049]
gi|55230100|gb|AAV45519.1| transcription repressor [Haloarcula marismortui ATCC 43049]
Length = 230
Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 50/128 (39%), Positives = 72/128 (56%), Gaps = 4/128 (3%)
Query: 18 EDTLKAIYSLEEDG-LPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPD---SHLTES 73
ED LKAIY LE DG P+ +A + + +++ L +G T
Sbjct: 7 EDYLKAIYRLERDGDPPIAPSTIAEMLDVTAPTVTSMVEKLADRGLVEREKYKGVQTTPE 66
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
G AL++IR HRLLE +L+E GY+ +E H +A EH++S+E + R+A L P FDP
Sbjct: 67 GETVALEIIRHHRLLETFLTEQLGYDWAEVHEEAEVLEHHISEEFERRVAAVLDEPEFDP 126
Query: 134 HGDPIPTE 141
HGDPIP++
Sbjct: 127 HGDPIPSD 134
>gi|94986367|ref|YP_605731.1| iron (metal) dependent repressor, DtxR family [Deinococcus
geothermalis DSM 11300]
gi|94556648|gb|ABF46562.1| iron (metal) dependent repressor, DtxR family [Deinococcus
geothermalis DSM 11300]
Length = 221
Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 65/183 (35%), Positives = 91/183 (49%), Gaps = 6/183 (3%)
Query: 17 SEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQG---YCLPPDSHLTES 73
+ED LK +Y L + G V LA G+ ++ +L L +QG + + LT
Sbjct: 10 AEDYLKHLYVLGQAG-KVTTQALADALGVVPASATGMLRKLTEQGLVAHAPYQGAQLTAE 68
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
G++ AL+V+R HRLLE +L G E H +A + EH LS+ + RIA LG+P DP
Sbjct: 69 GQRVALEVLRHHRLLELFLHRALGVPLDEVHEEAEQLEHALSERLEARIAAWLGDPTHDP 128
Query: 134 HGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIED-EPADLYRQIETIGFFRGAVFHLL 192
HGDPIPT GEV + +L + I D +PA L R + G G L
Sbjct: 129 HGDPIPTLAGEVPARAERRLTQLAPGEGATIARIPDNDPAGL-RALVAAGLTPGVAVKLQ 187
Query: 193 RTD 195
+ D
Sbjct: 188 QVD 190
>gi|50954157|ref|YP_061445.1| iron-dependant repressor, DtxR metalloregulatory family [Leifsonia
xyli subsp. xyli str. CTCB07]
gi|50950639|gb|AAT88340.1| iron-dependant repressor, DtxR metalloregulatory family [Leifsonia
xyli subsp. xyli str. CTCB07]
Length = 222
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 52/132 (39%), Positives = 75/132 (56%), Gaps = 4/132 (3%)
Query: 16 LSEDTLKAIY-SLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDS---HLT 71
+++D LK I+ + E +G P+ +LA G++ + + L QG LT
Sbjct: 9 VAQDYLKVIWCATEWEGDPITVKQLAERMGVRAATVSDGIRRLADQGLLAHEPYGGIELT 68
Query: 72 ESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLF 131
++GR A+ ++RRHRL+E +L E GY E H +A EH +SDE +RI RLG P
Sbjct: 69 DAGRHGAVAMVRRHRLIETFLVEELGYGWDEVHDEAEVLEHAVSDELIDRIDRRLGYPAR 128
Query: 132 DPHGDPIPTEEG 143
DPHGDPIPT +G
Sbjct: 129 DPHGDPIPTADG 140
>gi|108803498|ref|YP_643435.1| iron (metal) dependent repressor, DtxR family [Rubrobacter
xylanophilus DSM 9941]
gi|108764741|gb|ABG03623.1| iron (metal) dependent repressor, DtxR family [Rubrobacter
xylanophilus DSM 9941]
Length = 227
Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 60/195 (30%), Positives = 99/195 (50%), Gaps = 6/195 (3%)
Query: 17 SEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPP---DSHLTES 73
+ED LKAI+++ +G + ++ + ++ +L L + G+ + LTE
Sbjct: 16 TEDYLKAIWAVGREG-SASTKEISEHLSVAPASVTNMLGRLQEMGFVRYERYRGASLTEK 74
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
G + AL+++R+HRL+E +L EH GY E H +A + EH +SD ER+A LG+P DP
Sbjct: 75 GYREALRLVRKHRLIETFLLEHLGYSWQEVHEEAERLEHAVSDLFTERLAEYLGHPGRDP 134
Query: 134 HGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRGAVFHLLR 193
HGDPIP +G ++ E E VR+ ++ ++ G G +
Sbjct: 135 HGDPIPAPDGTMERQEARPLAETAAGERVRISRVDQSSPEVLEYFGERGLVPGRRLRVTE 194
Query: 194 T-DTDGVHLSFEGEQ 207
T DGV ++ E E+
Sbjct: 195 TRKLDGV-IAVEDEE 208
>gi|31793964|ref|NP_856457.1| PROBABLE TRANSCRIPTIONAL REPRESSOR SIRR [Mycobacterium bovis
AF2122/97]
gi|121638668|ref|YP_978892.1| putative transcriptional repressor sirR [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|31619558|emb|CAD94996.1| PROBABLE TRANSCRIPTIONAL REPRESSOR SIRR [Mycobacterium bovis
AF2122/97]
gi|121494316|emb|CAL72794.1| Probable transcriptional repressor sirR [Mycobacterium bovis BCG
str. Pasteur 1173P2]
Length = 228
Score = 82.0 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 59/175 (33%), Positives = 83/175 (47%), Gaps = 4/175 (2%)
Query: 12 DVRRLSEDTLKAIYSLEE-DGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPD--- 67
D+ +++D LK I++ +E V+ LA G+ S + L +QG
Sbjct: 9 DLSAVAQDYLKVIWTAQEWSQDKVSTKMLAERIGVSASTASESIRKLAEQGLVDHEKYGA 68
Query: 68 SHLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLG 127
LT+SGR+ AL ++RRHRLLE +L GY E H +A EH +SD RI +LG
Sbjct: 69 VTLTDSGRRAALAMVRRHRLLETFLVNELGYRWDEVHDEAEVLEHAVSDRLMARIDAKLG 128
Query: 128 NPLFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIG 182
P DPHG PIP +G+V + D V I D + R +IG
Sbjct: 129 FPQRDPHGAPIPGADGQVPTPPARQLWACRDGDTGTVARISDADPQMLRYFASIG 183
>gi|38233226|ref|NP_938993.1| Putative diphtheria toxin repressor 2 [Corynebacterium diphtheriae
NCTC 13129]
gi|38199485|emb|CAE49136.1| Putative diphtheria toxin repressor 2 [Corynebacterium diphtheriae]
Length = 204
Score = 82.0 bits (201), Expect = 5e-14, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 64/117 (54%)
Query: 70 LTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNP 129
LTE G A +++RRHRL+E +L E G+ E H +A EH ++D+ +RI LGNP
Sbjct: 48 LTEQGEALAKQMVRRHRLVEMFLFETLGFGWDEVHEEAEILEHAMTDKLLQRIDDHLGNP 107
Query: 130 LFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRG 186
DPHGDPIP+EEG V SV E V + I D A+L R + G G
Sbjct: 108 SRDPHGDPIPSEEGIVDSVPIHQLGEFAVGEEVIIERIHDRDANLLRYLAEHGVLPG 164
>gi|126645463|ref|ZP_01718007.1| putative transcriptional regulator [Algoriphagus sp. PR1]
gi|126578874|gb|EAZ83038.1| putative transcriptional regulator [Algoriphagus sp. PR1]
Length = 222
Score = 81.6 bits (200), Expect = 6e-14, Method: Composition-based stats.
Identities = 60/189 (31%), Positives = 98/189 (51%), Gaps = 11/189 (5%)
Query: 18 EDTLKAIYSLEEDGL-PVNADRLAALTGLKISNQQYILDLLHKQG------YCLPPDSHL 70
E+ LKAIY L + G V+ + +AA K ++ + D+L K G Y ++
Sbjct: 10 ENYLKAIYHLSDGGTKSVSTNDIAAEIKTKPAS---VSDMLRKLGDKAVIEYRKYYGVNI 66
Query: 71 TESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPL 130
TE G+K AL IR+HRL E +L + + E H A + EH S +R+ L P
Sbjct: 67 TEEGKKIALGTIRKHRLWEVFLVDKLQFAWDEVHEVAEELEHIQSPLLIQRLDAYLNYPK 126
Query: 131 FDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRGAVFH 190
FDPHGDPIP E G+V++ V +E+ +++ ++D A + ++ +G + GA
Sbjct: 127 FDPHGDPIPDEFGDVKARPRVALNEMEIGQSGQIVAVKDSSAAFLQYLDKVGAYIGARIK 186
Query: 191 LL-RTDTDG 198
++ + + DG
Sbjct: 187 VMDKVEFDG 195
>gi|111023611|ref|YP_706583.1| probable Fe(2+)-dependent transcriptional regulator [Rhodococcus
sp. RHA1]
gi|110823141|gb|ABG98425.1| probable Fe(2+)-dependent transcriptional regulator [Rhodococcus
sp. RHA1]
Length = 243
Score = 81.3 bits (199), Expect = 7e-14, Method: Composition-based stats.
Identities = 54/171 (31%), Positives = 85/171 (49%), Gaps = 4/171 (2%)
Query: 16 LSEDTLKAIYSLEE-DGLPVNADRLAALTGLKISNQQYILDLLHKQG---YCLPPDSHLT 71
+++D LK I++++E V+ L+ G+ S + L QG + LT
Sbjct: 30 VAQDYLKVIWTVQEWSQERVSTKLLSEKIGVSASTVSEAIRKLSDQGLVDHARYGSIALT 89
Query: 72 ESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLF 131
E+GR A+ ++RRHRL+E YL GY E H +A EH +SD R+ +LG+P
Sbjct: 90 EAGRVAAVGMVRRHRLIETYLVHELGYGWDEVHDEAEVLEHAVSDLMISRMDAKLGHPER 149
Query: 132 DPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIG 182
DPHGDPIP +G V + + + R+ I D + R +++G
Sbjct: 150 DPHGDPIPAVDGSVPTPPARQLSDFVNGESGRIARISDSDPAMLRYFDSVG 200
>gi|88804291|ref|ZP_01119811.1| iron dependent repressor [Robiginitalea biformata HTCC2501]
gi|88785170|gb|EAR16339.1| iron dependent repressor [Robiginitalea biformata HTCC2501]
Length = 220
Score = 80.9 bits (198), Expect = 8e-14, Method: Composition-based stats.
Identities = 63/211 (29%), Positives = 103/211 (48%), Gaps = 6/211 (2%)
Query: 18 EDTLKAIYSLEEDG-LPVNADRLAALTGLKISNQQYILDLLHKQG---YCLPPDSHLTES 73
E+ LK IY L + G + V + +AA K S+ ++ L ++G Y LTES
Sbjct: 6 ENYLKGIYHLCKGGSVAVATNAIAAQMDTKPSSVTDMVKRLSEKGLVDYRKYQGVSLTES 65
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
G + ALK+IR+HRL E +L E ++ + H A + EH S+ +R+ L P +DP
Sbjct: 66 GNRQALKIIRKHRLWELFLVEKLDFKWDQVHEIAEQLEHIESEVLIDRLDALLEYPDYDP 125
Query: 134 HGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRGAVFHLLR 193
HGDPIP + G ++ E +P S + + ++D A R ++ G +L
Sbjct: 126 HGDPIPDKNGVFKTREKKLLSAMPVPSEGQFVGVKDSSATFLRFLDRHRIALGKKVSILE 185
Query: 194 TDT--DGVHLSFEGEQFLLPQEAAHNLTVMP 222
+ + + +GE F + + A NL + P
Sbjct: 186 KEEFDKSMRIRLDGEAFRISHQIASNLYIKP 216
>gi|54026022|ref|YP_120264.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
gi|54017530|dbj|BAD58900.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
Length = 255
Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 55/175 (31%), Positives = 86/175 (49%), Gaps = 4/175 (2%)
Query: 12 DVRRLSEDTLKAIYSLEE-DGLPVNADRLAALTGLKISNQQYILDLLHKQG---YCLPPD 67
++ +++D LK I++ +E V+ LA G+ S + L QG +
Sbjct: 37 ELTSVAQDYLKVIWTAQEWSQEKVSTKLLAERIGVSASTVSEAVRKLADQGLVEHARYGS 96
Query: 68 SHLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLG 127
LT+ GR+ A+ ++RRHRL+E +L GY E H +A EH +S+ RI +LG
Sbjct: 97 IALTDHGRRAAVAMVRRHRLIETFLVNELGYGWDEVHDEAEVLEHAVSELLMARIDAKLG 156
Query: 128 NPLFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIG 182
P DPHGDPIP+ +G+V + + RV I D D+ R + +G
Sbjct: 157 YPDRDPHGDPIPSVDGDVPTPPARQLSDFEAGQSGRVARISDSDPDMLRYFDAVG 211
>gi|148658078|ref|YP_001278283.1| FeoA family protein [Roseiflexus sp. RS-1]
gi|148570188|gb|ABQ92333.1| FeoA family protein [Roseiflexus sp. RS-1]
Length = 237
Score = 80.5 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 60/178 (33%), Positives = 86/178 (48%), Gaps = 15/178 (8%)
Query: 18 EDTLKAIYSLEED----GLPVNADRL----AALTG-LKISNQQYILDLLHKQGYCLPPDS 68
+D LK I+ ++ + V A+RL A++TG LK ++D QG L P
Sbjct: 11 QDYLKTIFDIQREQGRVSTTVLAERLRNSPASVTGMLKKLASLNLIDYEPYQGAVLTP-- 68
Query: 69 HLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
+G K AL+VIR HRL+E+YL+E G H +A K EH LS++ ++RI LG
Sbjct: 69 ----AGEKIALEVIRHHRLIERYLAEALGVPWDRVHDEAEKWEHVLSEDLEDRIDAVLGY 124
Query: 129 PLFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRG 186
P DPHG PIPT +G + +L V + D + R +G G
Sbjct: 125 PTTDPHGAPIPTRDGALPPPHATRLSDLQTGQSATVAEVSDHDPAMLRYFAELGLRPG 182
>gi|76802081|ref|YP_327089.1| transcription regulator [Natronomonas pharaonis DSM 2160]
gi|76557946|emb|CAI49530.1| transcription regulator [Natronomonas pharaonis DSM 2160]
Length = 219
Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 4/132 (3%)
Query: 18 EDTLKAIYSLEEDGLP-VNADRLAALTGLKISNQQYILDLLHKQGYCLPPD---SHLTES 73
ED +KAIY+L+ D V LA + ++ L ++G + LTE
Sbjct: 7 EDYIKAIYALQNDTDERVGTSELADYMDVTSPTVSSMIKKLEERGLVDREEYRGVRLTEE 66
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
G AL+++R HRLLE +L+EH Y+ ++ H +A + EH++S+E ERIA L NP DP
Sbjct: 67 GEVVALEILRHHRLLEAFLTEHLDYDWADVHEEADRLEHHVSEELTERIAEALDNPGVDP 126
Query: 134 HGDPIPTEEGEV 145
HGDPIP + E+
Sbjct: 127 HGDPIPDADLEL 138
>gi|108799143|ref|YP_639340.1| iron (metal) dependent repressor, DtxR family [Mycobacterium sp.
MCS]
gi|119868258|ref|YP_938210.1| iron dependent repressor [Mycobacterium sp. KMS]
gi|126434751|ref|YP_001070442.1| iron dependent repressor [Mycobacterium sp. JLS]
gi|108769562|gb|ABG08284.1| iron (metal) dependent repressor, DtxR family [Mycobacterium sp.
MCS]
gi|119694347|gb|ABL91420.1| iron dependent repressor [Mycobacterium sp. KMS]
gi|126234551|gb|ABN97951.1| iron dependent repressor [Mycobacterium sp. JLS]
Length = 230
Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 70/226 (30%), Positives = 106/226 (46%), Gaps = 18/226 (7%)
Query: 12 DVRRLSEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYC-LPPDSHL 70
D+ +E L+ IY LEE+G+ R+A + + + G + D HL
Sbjct: 3 DLVDTTEMYLRTIYDLEEEGVVPLRARIAERLDQSGPTVSQTVSRMERDGLLQVAGDRHL 62
Query: 71 --TESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
TE GR A+ V+R+HRL E+ L + G E H +AC+ EH +S++ + R+ L N
Sbjct: 63 ELTEKGRALAIAVMRKHRLAERLLVDVIGLPWEEVHAEACRWEHVMSEDVERRLVQVLDN 122
Query: 129 PLFDPHGDPIP--TEEG-----EVQSVEGVHADELPDDSYVRVI------HIEDEPADLY 175
P P G+PIP +E G + V V ELP V V+ H++ + ADL
Sbjct: 123 PTTSPFGNPIPGLSELGLDSLSRAEVVNLVRLTELPAGMPVAVVVRQLTEHVQGD-ADLI 181
Query: 176 RQIETIGFFRGAVFHLLRTDTDGVHLSFEG-EQFLLPQEAAHNLTV 220
+++ G A + D GV++ G EQ LP AH + V
Sbjct: 182 ARLKDAGVVPNARVTVESADHGGVNIVIPGHEQVELPHHMAHAVKV 227
>gi|19551873|ref|NP_599875.1| Mn-dependent transcriptional regulator [Corynebacterium glutamicum
ATCC 13032]
gi|62389532|ref|YP_224934.1| IRON REPRESSOR PROTEIN [Corynebacterium glutamicum ATCC 13032]
gi|21323406|dbj|BAB98034.1| Mn-dependent transcriptional regulator [Corynebacterium glutamicum
ATCC 13032]
gi|41324866|emb|CAF19348.1| IRON REPRESSOR PROTEIN [Corynebacterium glutamicum ATCC 13032]
Length = 223
Score = 78.2 bits (191), Expect = 6e-13, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 68/143 (47%), Gaps = 1/143 (0%)
Query: 70 LTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNP 129
LTE G+ A+ ++RRHRLLE +L + GY E H A EH SD+ ERI LG P
Sbjct: 68 LTEQGKTLAIDMVRRHRLLETFLHDVLGYTWDEVHADADLLEHAASDQLIERIDAHLGRP 127
Query: 130 LFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRGAVF 189
DPHGDPIPT EG ++ + + V + ++D +L R + G
Sbjct: 128 RKDPHGDPIPTAEGVIEESPRTTLEAVQPGETVTISRVKDIDPELLRYLAQYNVSPGCRI 187
Query: 190 HLLRTDTDG-VHLSFEGEQFLLP 211
+ G VH+ EG P
Sbjct: 188 TVASGPLAGMVHVVVEGTDTSFP 210
>gi|145294810|ref|YP_001137631.1| hypothetical protein cgR_0757 [Corynebacterium glutamicum R]
gi|140844730|dbj|BAF53729.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 223
Score = 78.2 bits (191), Expect = 7e-13, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 68/143 (47%), Gaps = 1/143 (0%)
Query: 70 LTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNP 129
LTE G+ A+ ++RRHRLLE +L + GY E H A EH SD+ ERI LG P
Sbjct: 68 LTEQGKMLAIDMVRRHRLLETFLHDVLGYTWDEVHADADLLEHAASDQLIERIDAHLGRP 127
Query: 130 LFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRGAVF 189
DPHGDPIPT EG ++ + + V + ++D +L R + G
Sbjct: 128 RKDPHGDPIPTAEGVIEESPRTTLEAVQPGETVTISRVKDIDPELLRYLAQYNVSPGCRI 187
Query: 190 HLLRTDTDG-VHLSFEGEQFLLP 211
+ G VH+ EG P
Sbjct: 188 TVASGPLAGMVHVVVEGTDTSFP 210
>gi|25027207|ref|NP_737261.1| putative regulatory protein [Corynebacterium efficiens YS-314]
gi|23492488|dbj|BAC17461.1| putative regulatory protein [Corynebacterium efficiens YS-314]
Length = 248
Score = 77.8 bits (190), Expect = 8e-13, Method: Composition-based stats.
Identities = 56/175 (32%), Positives = 82/175 (46%), Gaps = 11/175 (6%)
Query: 12 DVRRLSEDTLKAIYSLEE--DGLPVNADRLAALTGLKISNQQYIL------DLLHKQGYC 63
D+ ++D LK I+ + + G P +A + K + DL+H + Y
Sbjct: 30 DLPDKTQDYLKTIWDITDRNGGQPATLGEIAEILEQKTPTASEAIKRLATRDLVHHERY- 88
Query: 64 LPPDSHLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIA 123
LT +GR AL+++RRHRLLE +L + GY E H A EH SD RI
Sbjct: 89 --SGVTLTATGRALALEMVRRHRLLETFLHDVLGYTWDEVHEDADLLEHAASDRLIARID 146
Query: 124 VRLGNPLFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQI 178
LG+P DPHGDPIPT EG + + + V + ++D +L R +
Sbjct: 147 AHLGHPRRDPHGDPIPTAEGLIDDLGHTTLATAVPGTTVTITRVQDIDPELLRYL 201
>gi|88802031|ref|ZP_01117559.1| Iron dependent repressor [Polaribacter irgensii 23-P]
gi|88782689|gb|EAR13866.1| Iron dependent repressor [Polaribacter irgensii 23-P]
Length = 217
Score = 77.8 bits (190), Expect = 8e-13, Method: Composition-based stats.
Identities = 60/216 (27%), Positives = 104/216 (48%), Gaps = 20/216 (9%)
Query: 18 EDTLKAIYSLEED---GLPVNA------DRLAALTGL--KISNQQYILDLLHKQGYCLPP 66
E+ LKAIY LE D G+ NA + +++T + K+S ++ +L QG L
Sbjct: 7 ENYLKAIYHLESDSKKGISTNAIAKSLETKASSVTDMVKKLSEKKVVL-YKKYQGVTL-- 63
Query: 67 DSHLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRL 126
T G+K A ++R+HRL E +L E + E H A + EH S + ++ L
Sbjct: 64 ----TAFGKKTAANIVRKHRLWEVFLVERLNFSWDEVHEVAEQLEHIKSPKLINQLDALL 119
Query: 127 GNPLFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRG 186
G P DPHGDPIP ++G V +++ + L + + + D ++ R ++ G
Sbjct: 120 GFPTHDPHGDPIPDKDGNVNTLDKILLSTLNKNESGVCVGVNDSSSEFLRFLDKKKITLG 179
Query: 187 AVFHLLRTD--TDGVHLSFEGEQFLLPQEAAHNLTV 220
+L + D + + +GE+ + ++ A NL +
Sbjct: 180 KKIIVLEKEDFDDSLFIEIDGEKLSISKKIASNLYI 215
>gi|81253186|ref|ZP_00877746.1| COG1321: Mn-dependent transcriptional regulator [Mycobacterium
tuberculosis C]
Length = 169
Score = 77.4 bits (189), Expect = 9e-13, Method: Composition-based stats.
Identities = 45/113 (39%), Positives = 58/113 (51%)
Query: 70 LTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNP 129
LT+S R+ AL ++RRHRLLE +L GY E H +A EH +SD RI +LG P
Sbjct: 12 LTDSERRAALAMVRRHRLLETFLVNELGYRWDEVHDEAEVLEHAVSDRLMARIDAKLGFP 71
Query: 130 LFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIG 182
DPHGDPIP +G+V + D V I D + R +IG
Sbjct: 72 QRDPHGDPIPGADGQVPTPPARQLWACRDGDTGTVARISDADPQMLRYFASIG 124
>gi|149176784|ref|ZP_01855395.1| iron-dependent transcriptional regulator [Planctomyces maris DSM
8797]
gi|148844425|gb|EDL58777.1| iron-dependent transcriptional regulator [Planctomyces maris DSM
8797]
Length = 221
Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 48/162 (29%), Positives = 85/162 (52%), Gaps = 4/162 (2%)
Query: 68 SHLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLG 127
+ LT++G+ A++V+RRHRL+E +L + + H +A EH +SD + I LG
Sbjct: 59 ASLTDAGKHSAIRVLRRHRLIELFLFQTLKLSWDQIHAEAENMEHAVSDFLVDHIDEYLG 118
Query: 128 NPLFDPHGDPIPTEEGEVQSV--EGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFR 185
P DPHGDPIP+ +G+++ PD +R++ + D+ + R + G
Sbjct: 119 FPETDPHGDPIPSIDGQMRRAYPNLTTLAACPDGVNLRIVQVTDQEPEFLRFLSRTGLEI 178
Query: 186 GAVFHLLRTDTD-GVHLS-FEGEQFLLPQEAAHNLTVMPCTD 225
G+V + + + G+ +S + G+Q + A N+ V+P D
Sbjct: 179 GSVGRVTEKNIEAGIVISEWSGQQISMGIHVAENMKVVPIPD 220
>gi|120403440|ref|YP_953269.1| iron dependent repressor [Mycobacterium vanbaalenii PYR-1]
gi|119956258|gb|ABM13263.1| iron dependent repressor [Mycobacterium vanbaalenii PYR-1]
Length = 229
Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 77/231 (33%), Positives = 115/231 (49%), Gaps = 29/231 (12%)
Query: 12 DVRRLSEDTLKAIYSLEEDG-LPVNA---DRLAALTGLKISNQQYILD---LLHKQGYCL 64
D+ +E L+ IY LEE+G +P+ A +RL +G +S ++ LLH G
Sbjct: 3 DLVDTTEMYLRTIYDLEEEGVIPLRARIAERLDQ-SGPTVSQTVSRMERDGLLHVAG--- 58
Query: 65 PPDSHL--TESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERI 122
D HL TE GR A+ V+R+HRL E+ L + G E H +AC+ EH +S + + R+
Sbjct: 59 --DRHLELTEKGRALAVAVMRKHRLAERLLVDVIGLPWEEVHAEACRWEHVMSVDVERRL 116
Query: 123 AVRLGNPLFDPHGDPIP--TEEG---EV-QSVEGVHADELPDDSYVRVI------HIEDE 170
L NP P G+PIP +E G E+ ++ V ELP V V+ H++ +
Sbjct: 117 VQVLNNPTTSPFGNPIPGLSELGVGDEINETFSMVRLTELPAGMPVAVVVRQLTEHVQGD 176
Query: 171 PADLYRQIETIGFFRGAVFHLLRTDTDGVHLSFEG-EQFLLPQEAAHNLTV 220
A+L +++ G A + D GV + G EQ LP E AH + V
Sbjct: 177 -AELIARLKDAGVVPNARVTVEVKDHGGVMIVIPGHEQVELPHEMAHAVKV 226
>gi|15609848|ref|NP_217227.1| IRON-DEPENDENT REPRESSOR AND ACTIVATOR IDER [Mycobacterium
tuberculosis H37Rv]
gi|15842249|ref|NP_337286.1| iron-dependent repressor IdeR [Mycobacterium tuberculosis CDC1551]
gi|31793883|ref|NP_856376.1| IRON-DEPENDENT REPRESSOR AND ACTIVATOR IDER [Mycobacterium bovis
AF2122/97]
gi|81253269|ref|ZP_00877826.1| COG1321: Mn-dependent transcriptional regulator [Mycobacterium
tuberculosis C]
gi|121638586|ref|YP_978810.1| Iron-dependent repressor and activator ideR [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|148662552|ref|YP_001284075.1| iron-dependent repressor IdeR [Mycobacterium tuberculosis H37Ra]
gi|148823900|ref|YP_001288654.1| iron-dependent repressor and activator ideR [Mycobacterium
tuberculosis F11]
gi|61226440|sp|P0A672|IDER_MYCTU Iron-dependent repressor ideR
gi|61226442|sp|P0A673|IDER_MYCBO Iron-dependent repressor ideR
gi|1171107|gb|AAA86057.1| similar to the Corynebacterium diptheriae diptheria toxin
repressor, Swiss-Prot Accession Number P33120
gi|2182002|emb|CAB09471.1| IRON-DEPENDENT REPRESSOR AND ACTIVATOR IDER [Mycobacterium
tuberculosis H37Rv]
gi|13882540|gb|AAK47100.1| iron-dependent repressor IdeR [Mycobacterium tuberculosis CDC1551]
gi|31619477|emb|CAD94915.1| IRON-DEPENDENT REPRESSOR AND ACTIVATOR IDER [Mycobacterium bovis
AF2122/97]
gi|121494234|emb|CAL72712.1| Iron-dependent repressor and activator ideR [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|124601874|gb|EAY60884.1| iron-dependent repressor and activator ideR [Mycobacterium
tuberculosis C]
gi|134150881|gb|EBA42926.1| iron-dependent repressor and activator ideR [Mycobacterium
tuberculosis str. Haarlem]
gi|148506704|gb|ABQ74513.1| iron-dependent repressor IdeR [Mycobacterium tuberculosis H37Ra]
gi|148722427|gb|ABR07052.1| iron-dependent repressor and activator ideR [Mycobacterium
tuberculosis F11]
Length = 230
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 67/221 (30%), Positives = 99/221 (44%), Gaps = 18/221 (8%)
Query: 17 SEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYC-LPPDSHL--TES 73
+E L+ IY LEE+G+ R+A + + + G + D HL TE
Sbjct: 8 TEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGDRHLELTEK 67
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
GR A+ V+R+HRL E+ L + G E H +AC+ EH +S++ + R+ L NP P
Sbjct: 68 GRALAIAVMRKHRLAERLLVDVIGLPWEEVHAEACRWEHVMSEDVERRLVKVLNNPTTSP 127
Query: 134 HGDPIP-------TEEGEVQSVEGVHADELPDDSYVRVI------HIEDEPADLYRQIET 180
G+PIP E V ELP S V V+ H++ + DL +++
Sbjct: 128 FGNPIPGLVELGVGPEPGADDANLVRLTELPAGSPVAVVVRQLTEHVQGD-IDLITRLKD 186
Query: 181 IGFFRGAVFHLLRTDTDGVHLSFEG-EQFLLPQEAAHNLTV 220
G A + T GV + G E LP E AH + V
Sbjct: 187 AGVVPNARVTVETTPGGGVTIVIPGHENVTLPHEMAHAVKV 227
>gi|118468273|ref|YP_887081.1| iron-dependent repressor IdeR [Mycobacterium smegmatis str. MC2
155]
gi|118169560|gb|ABK70456.1| iron-dependent repressor IdeR [Mycobacterium smegmatis str. MC2
155]
Length = 230
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 75/232 (32%), Positives = 112/232 (48%), Gaps = 30/232 (12%)
Query: 12 DVRRLSEDTLKAIYSLEEDGL-PVNA---DRLAALTGLKISNQQYILD---LLHKQGYCL 64
D+ +E L+ IY LEE+G+ P+ A +RL +G +S ++ LLH G
Sbjct: 3 DLVDTTEMYLRTIYDLEEEGVVPLRARIAERLDQ-SGPTVSQTVSRMERDGLLHVAG--- 58
Query: 65 PPDSHL--TESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERI 122
D HL T+ GR A+ V+R+HRL E+ L + G + H +AC+ EH +S+E + R+
Sbjct: 59 --DRHLELTDKGRALAVAVMRKHRLAERLLVDVIGLPWEDVHAEACRWEHVMSEEVERRL 116
Query: 123 AVRLGNPLFDPHGDPIP--TEEG-----EVQSVEGVHADELPDDSYVRVI------HIED 169
L NP P G+PIP TE G + V V ELP V V+ H++
Sbjct: 117 VQVLDNPTTSPFGNPIPGLTELGVTPGVNTEDVSLVRLTELPVGMPVAVVVRQLTEHVQG 176
Query: 170 EPADLYRQIETIGFFRGAVFHLLRTDTDGVHLSFEG-EQFLLPQEAAHNLTV 220
+ DL +++ G A + + GV + G EQ LP AH + V
Sbjct: 177 D-TDLIGRLKEAGVVPNARVTVEANNNGGVMIVIPGHEQVELPHHMAHAVKV 227
>gi|156743261|ref|YP_001433390.1| iron (metal) dependent repressor, DtxR family [Roseiflexus
castenholzii DSM 13941]
gi|156234589|gb|ABU59372.1| iron (metal) dependent repressor, DtxR family [Roseiflexus
castenholzii DSM 13941]
Length = 230
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 43/117 (36%), Positives = 60/117 (51%)
Query: 70 LTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNP 129
LT +G K AL+VIR HRL+E+YL+E G + H +A K EH LS++ ++RI LG P
Sbjct: 73 LTPAGEKIALEVIRHHRLIERYLAEALGVPWDQVHAEAEKWEHVLSEDLEDRIDAVLGYP 132
Query: 130 LFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRG 186
DPHG PIP +G + +L V + D + R +G G
Sbjct: 133 TTDPHGAPIPKRDGTLPPPHTTRLSDLQTGQSAMVAEVSDHDPAMLRYFAELGLRPG 189
>gi|110637770|ref|YP_677977.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406]
gi|110280451|gb|ABG58637.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406]
Length = 235
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 59/215 (27%), Positives = 106/215 (49%), Gaps = 8/215 (3%)
Query: 18 EDTLKAIY--SLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQ---GYCLPPDSHLTE 72
E+ LKA+ +L+E+ + LAAL +K + +L L + Y LT
Sbjct: 7 ENYLKALLKITLQEENEGAGTNELAALLSVKPATVTDMLKKLKDKNLVSYEKYGKIFLTS 66
Query: 73 SGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFD 132
G+KY ++R+HRL E +L + + E H A + EH S + E++ LG+P D
Sbjct: 67 KGKKYGTDILRKHRLWETFLFQKLEFTWDEIHEVAEQLEHIQSAKLIEKLDKFLGHPTLD 126
Query: 133 PHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRGAVFHLL 192
PHGD IPT GE++ E+ D+ R++ ++D + + + IG +L
Sbjct: 127 PHGDVIPTSSGEIKIQFTNTLSEIDVDTTCRMVAVKDNSSSFLQYVVKIGLALNTEIKVL 186
Query: 193 -RTDTDGV-HLSFEGEQFLLPQEAAHNLTVMPCTD 225
+ + D + + +G++ + Q+ A N+ V+ C++
Sbjct: 187 AKQEYDSLMEIEIKGKRCSVSQKFAENIFVV-CSN 220
>gi|13399468|pdb|1FX7|A Chain A, Crystal Structure Of The Iron-Dependent Regulator (Ider)
From Mycobacterium Tuberculosis
gi|13399469|pdb|1FX7|B Chain B, Crystal Structure Of The Iron-Dependent Regulator (Ider)
From Mycobacterium Tuberculosis
gi|13399470|pdb|1FX7|C Chain C, Crystal Structure Of The Iron-Dependent Regulator (Ider)
From Mycobacterium Tuberculosis
gi|13399471|pdb|1FX7|D Chain D, Crystal Structure Of The Iron-Dependent Regulator (Ider)
From Mycobacterium Tuberculosis
gi|55670259|pdb|1U8R|A Chain A, Crystal Structure Of An Ider-Dna Complex Reveals A
Conformational Change In Activated Ider For
Base-Specific Interactions
gi|55670260|pdb|1U8R|B Chain B, Crystal Structure Of An Ider-Dna Complex Reveals A
Conformational Change In Activated Ider For
Base-Specific Interactions
gi|55670261|pdb|1U8R|C Chain C, Crystal Structure Of An Ider-Dna Complex Reveals A
Conformational Change In Activated Ider For
Base-Specific Interactions
gi|55670262|pdb|1U8R|D Chain D, Crystal Structure Of An Ider-Dna Complex Reveals A
Conformational Change In Activated Ider For
Base-Specific Interactions
gi|55670265|pdb|1U8R|G Chain G, Crystal Structure Of An Ider-Dna Complex Reveals A
Conformational Change In Activated Ider For
Base-Specific Interactions
gi|55670266|pdb|1U8R|H Chain H, Crystal Structure Of An Ider-Dna Complex Reveals A
Conformational Change In Activated Ider For
Base-Specific Interactions
gi|55670267|pdb|1U8R|I Chain I, Crystal Structure Of An Ider-Dna Complex Reveals A
Conformational Change In Activated Ider For
Base-Specific Interactions
gi|55670268|pdb|1U8R|J Chain J, Crystal Structure Of An Ider-Dna Complex Reveals A
Conformational Change In Activated Ider For
Base-Specific Interactions
Length = 230
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 67/221 (30%), Positives = 99/221 (44%), Gaps = 18/221 (8%)
Query: 17 SEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYC-LPPDSHL--TES 73
+E L+ IY LEE+G+ R+A + + + G + D HL TE
Sbjct: 8 TEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGDRHLELTEK 67
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
GR A+ V+R+HRL E+ L + G E H +AC+ EH +S++ + R+ L NP P
Sbjct: 68 GRALAIAVMRKHRLAERLLVDVIGLPWEEVHAEACRWEHVMSEDVERRLVKVLNNPTTSP 127
Query: 134 HGDPIP-------TEEGEVQSVEGVHADELPDDSYVRVI------HIEDEPADLYRQIET 180
G+PIP E V ELP S V V+ H++ + DL +++
Sbjct: 128 FGNPIPGLDELGVGPEPGADDANLVRLTELPAGSPVAVVVRQLTEHVQGD-IDLITRLKD 186
Query: 181 IGFFRGAVFHLLRTDTDGVHLSFEG-EQFLLPQEAAHNLTV 220
G A + T GV + G E LP E AH + V
Sbjct: 187 AGVVPNARVTVETTPGGGVTIVIPGHENVTLPHEMAHAVKV 227
>gi|153895131|ref|ZP_02015714.1| iron dependent repressor [Halorubrum lacusprofundi ATCC 49239]
gi|151586354|gb|EDN49778.1| iron dependent repressor [Halorubrum lacusprofundi ATCC 49239]
Length = 219
Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 50/131 (38%), Positives = 71/131 (54%), Gaps = 4/131 (3%)
Query: 18 EDTLKAIYSLE-EDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPP---DSHLTES 73
ED LKAIY L+ E G PV+ +A + +L L +G + LT
Sbjct: 7 EDYLKAIYVLQSEQGPPVSTSAIAEYLDKTSPSVTDMLGKLEDRGLVEREPYRGTELTAE 66
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
G AL+++R HRLLE +L+E Y+ SE H +A EH++S+ + R+A L +P DP
Sbjct: 67 GEAVALEIVRHHRLLEAFLAERLDYDWSEVHEEADALEHHISEAFERRVAETLDDPAVDP 126
Query: 134 HGDPIPTEEGE 144
HGDPIP + E
Sbjct: 127 HGDPIPGADLE 137
>gi|87310429|ref|ZP_01092559.1| iron repressor protein [Blastopirellula marina DSM 3645]
gi|87286928|gb|EAQ78832.1| iron repressor protein [Blastopirellula marina DSM 3645]
Length = 220
Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 64/214 (29%), Positives = 96/214 (44%), Gaps = 7/214 (3%)
Query: 18 EDTLKAIYSL--EEDGLPVNADRLAALTGLKISNQQYILDLLHKQG---YCLPPDSHLTE 72
E+ +KAIY + D + LA + +L L + G Y LT+
Sbjct: 7 ENYVKAIYQVCARADKDAASTGELATALSVSPGTVTSMLKTLSEAGLAEYMKYEGVSLTQ 66
Query: 73 SGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFD 132
+GR AL+V+RRHRL+E +L E H +A EH +SD +RI LG P D
Sbjct: 67 AGRTLALRVLRRHRLIELFLVRTLDLTWDEVHEEAEHMEHAVSDLLVDRIDEYLGYPDTD 126
Query: 133 PHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRGAVFHLL 192
PHGDPIP +G + SV+ + R+I + D+ +D R + G ++
Sbjct: 127 PHGDPIPRADGTMVSVDSKKLTKWDAAEPFRLIRVMDQTSDFLRYLTEESLAPGCEGKII 186
Query: 193 --RTDTDGVHLSFEGEQFLLPQEAAHNLTVMPCT 224
R + + + +G Q L +AA L V T
Sbjct: 187 AFRAEAGVLTIEVDGRQTTLGLDAADKLLVSALT 220
>gi|118465346|ref|YP_882781.1| iron-dependent repressor IdeR [Mycobacterium avium 104]
gi|118166633|gb|ABK67530.1| iron-dependent repressor IdeR [Mycobacterium avium 104]
Length = 229
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 71/231 (30%), Positives = 107/231 (46%), Gaps = 29/231 (12%)
Query: 12 DVRRLSEDTLKAIYSLEEDGLPVNADRLAA---LTGLKISNQQYILD---LLHKQGYCLP 65
D+ +E L+ IY LEE+G+ R+A +G +S ++ LLH G
Sbjct: 3 DLVDTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLHVAG---- 58
Query: 66 PDSHL--TESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIA 123
D HL T+ GR A+ V+R+HRL E+ L + G E H +AC+ EH +S++ + R+
Sbjct: 59 -DRHLELTDKGRALAVAVMRKHRLAERLLVDVIGLPWEEVHAEACRWEHVMSEDVERRLV 117
Query: 124 VRLGNPLFDPHGDPIP-------TEEGEVQSVEGVHADELPDDSYVRVI------HIEDE 170
L NP P G+PIP E + V ELP + V V+ H++ +
Sbjct: 118 KVLNNPTTSPFGNPIPGLLDLGVGPESGAEEANLVRLTELPSGAPVAVVVRQLTEHVQGD 177
Query: 171 PADLYRQIETIGFFRGAVFHLLRTDTDGVHLSFEG-EQFLLPQEAAHNLTV 220
DL +++ G A + T GV + G E LP E AH + V
Sbjct: 178 -IDLISRLKDAGVVPNARV-TVETGPAGVTIVIPGHENVTLPHEMAHAVKV 226
>gi|145224530|ref|YP_001135208.1| iron dependent repressor [Mycobacterium gilvum PYR-GCK]
gi|145217016|gb|ABP46420.1| iron dependent repressor [Mycobacterium gilvum PYR-GCK]
Length = 229
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 75/233 (32%), Positives = 111/233 (47%), Gaps = 33/233 (14%)
Query: 12 DVRRLSEDTLKAIYSLEEDG-LPVNA---DRLAALTGLKISNQQYILD---LLHKQGYCL 64
D+ +E L+ IY LEE+ +P+ A +RL +G +S ++ LLH G
Sbjct: 3 DLVDTTEMYLRTIYDLEEECVIPLRARIAERLDQ-SGPTVSQTVSRMERDGLLHVAG--- 58
Query: 65 PPDSHL--TESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERI 122
D HL T+ GR A+ V+R+HRL E+ L + G E H +AC+ EH +S + + R+
Sbjct: 59 --DRHLELTDKGRALAVAVMRKHRLAERLLVDVIGLPWEEVHAEACRWEHVMSVDVERRL 116
Query: 123 AVRLGNPLFDPHGDPIP--------TEEGEVQSVEGVHADELPDDSYVRVI------HIE 168
L NP P G+PIP E GE S+ V ELP V V+ H++
Sbjct: 117 VQVLNNPTTSPFGNPIPGLSELGVGDESGEAMSL--VRLTELPAGMPVAVVVRQLTEHVQ 174
Query: 169 DEPADLYRQIETIGFFRGAVFHLLRTDTDGVHLSFEG-EQFLLPQEAAHNLTV 220
+ +L +++ G A + D GV + G EQ LP E AH + V
Sbjct: 175 GD-VELIARLKDAGVVPNARVTVENNDHGGVMIVIPGHEQVELPHEMAHAVRV 226
>gi|119952751|ref|YP_950214.1| putative Iron dependent repressor [Arthrobacter aurescens TC1]
gi|119951881|gb|ABM10790.1| putative Iron dependent repressor [Arthrobacter aurescens TC1]
Length = 236
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 72/227 (31%), Positives = 99/227 (43%), Gaps = 8/227 (3%)
Query: 2 NLFSNLLFRFDVRRLSEDTLKAIYSLEE-DGLPVNADRLAALTGLKISNQQYILDLLHKQ 60
N S L D+ +++D LK ++ L E PV +A G+ S + Q
Sbjct: 4 NTGSGALQASDLSAVAQDYLKLVWLLREWSDEPVTVGLVAERLGVSPSTASEGIRKYATQ 63
Query: 61 G---YCLPPDSHLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDE 117
G + LT +G YAL ++RRHRLLE +L + GY E H +A EH +SD
Sbjct: 64 GLLTHARYGGVELTPTGLDYALVMVRRHRLLETFLVQKLGYRWDEVHHEAEVLEHAVSDT 123
Query: 118 EQERIAVRLGNPLFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQ 177
RI LG+P DPHGDPIP + V + V + + DE A+L R
Sbjct: 124 FIARIDELLGHPQHDPHGDPIPQPGEHPDRPDAVPLVDAQPGQAVSIRRVSDESAELLRY 183
Query: 178 IETIGFFRGA--VFHLLRTDTDG--VHLSFEGEQFLLPQEAAHNLTV 220
G A + +T T G V L G+ L EAA L +
Sbjct: 184 FAEQGLVPDAQIIIQERKTFTAGTPVRLIGTGKDISLGDEAAAALWI 230
>gi|88803088|ref|ZP_01118614.1| putative metal-dependent transcriptional regulator [Polaribacter
irgensii 23-P]
gi|88780654|gb|EAR11833.1| putative metal-dependent transcriptional regulator [Polaribacter
irgensii 23-P]
Length = 237
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 62/215 (28%), Positives = 95/215 (44%), Gaps = 23/215 (10%)
Query: 18 EDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDSH---LTESG 74
E+ LKAIY L + + V+ L+ + ++ + ++G+ L LT G
Sbjct: 26 ENYLKAIYLLSRESIDVSITELSKKMNVSKPTSNNMVKKMEERGWLLYEKYKPIKLTSKG 85
Query: 75 RKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDPH 134
K ++R+HRL E +LS+ G+ E H A + EH S +R+ LG P DPH
Sbjct: 86 EKLGALIVRKHRLTEMFLSKVMGFGWEEVHDIAEEVEHISSIIFFDRMDKILGFPTLDPH 145
Query: 135 GDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLY----------------RQI 178
G PIP EGEV V + + + V++ +E+ DL R I
Sbjct: 146 GSPIPDREGEVLKVNYLKLGSIKEGQKVKLRGLENSSKDLLLYLNKKRIKLGTVLLIRHI 205
Query: 179 ETIGFFRGAVFHLLRTDTDGVHLSFEGEQFLLPQE 213
ET F +L D + L+F+ Q LL +E
Sbjct: 206 ETF----DNSFEVLLEDNATIVLTFDVCQSLLVEE 236
>gi|1171105|gb|AAA86056.1| similar to the Corynebacterium diptheriae diptheria toxin
repressor, Swiss-Prot Accession Number P33120
Length = 233
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 71/231 (30%), Positives = 107/231 (46%), Gaps = 28/231 (12%)
Query: 12 DVRRLSEDTLKAIYSLEEDGLPVNADRLAA---LTGLKISNQQYILD---LLHKQGYCLP 65
D+ +E L+ IY LEE+G+ R+A +G +S ++ LLH G
Sbjct: 3 DLVDTTEMYLRTIYDLEEEGVVPLRARIAERLDQSGPTVSQTVSRMERDGLLHVAG---- 58
Query: 66 PDSHL--TESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIA 123
D HL T+ GR A+ V+R+HRL E+ L + G + H +AC+ EH +S+E + R+
Sbjct: 59 -DRHLELTDKGRALAVAVMRKHRLAERLLVDVIGLPWEDVHAEACRWEHVMSEEVERRLV 117
Query: 124 VRLGNPLFDPHGDPIP-------TEEGEVQSVEGVHADELPDDSYVRVI------HIEDE 170
L NP P G+PIP T + V V ELP V V+ H++ +
Sbjct: 118 QVLENPTTSPFGNPIPGLTELAVTPGVNTEDVSLVRLTELPVGMPVAVVVRQLTEHVQGD 177
Query: 171 PADLYRQIETIGFFRGAVFHLLRTDTDGVHLSFEG-EQFLLPQEAAHNLTV 220
DL +++ G A + + GV + G EQ LP AH + V
Sbjct: 178 -TDLIGRLKEAGVVPNARVTVEANNNGGVMIVIPGHEQVELPHHMAHAVKV 227
>gi|149369473|ref|ZP_01889325.1| Mn-dependent transcriptional regulator [unidentified eubacterium
SCB49]
gi|149356900|gb|EDM45455.1| Mn-dependent transcriptional regulator [unidentified eubacterium
SCB49]
Length = 218
Score = 75.1 bits (183), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 46/80 (57%)
Query: 70 LTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNP 129
LTE GRK A VIR+HRL E +L + + E H A + EH SDE +R+ LG P
Sbjct: 63 LTEQGRKVAAGVIRKHRLWEVFLVDKLNFHWDEVHEIAEQLEHIQSDELIKRLDSFLGTP 122
Query: 130 LFDPHGDPIPTEEGEVQSVE 149
FDPHGDPIP E G E
Sbjct: 123 GFDPHGDPIPDENGNFMKTE 142
>gi|110638423|ref|YP_678632.1| Mn-dependent transcriptional regulator [Cytophaga hutchinsonii ATCC
33406]
gi|110281104|gb|ABG59290.1| Mn-dependent transcriptional regulator [Cytophaga hutchinsonii ATCC
33406]
Length = 218
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 48/132 (36%), Positives = 72/132 (54%), Gaps = 4/132 (3%)
Query: 18 EDTLKAIYSLE-EDGLPVNADRLAALTGLKISNQQYILDLLHKQG---YCLPPDSHLTES 73
E+ +K IY L ED V+ + +A + K ++ +L L ++ Y LT+
Sbjct: 7 ENYIKTIYHLSGEDNRDVSTNGIAEVLKTKPASVTDMLRKLSEKSFINYIKYQGVTLTKK 66
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
G+K AL++IR+HRL E +L + + E H A + EH S R+ LGNP FDP
Sbjct: 67 GKKEALQIIRKHRLWEVFLVDKLKFHWDEVHDIAEQLEHIQSSVLISRLDEFLGNPAFDP 126
Query: 134 HGDPIPTEEGEV 145
HGDPIP ++GE+
Sbjct: 127 HGDPIPDQQGEI 138
>gi|86135190|ref|ZP_01053772.1| putative transcriptional regulator [Tenacibaculum sp. MED152]
gi|85822053|gb|EAQ43200.1| putative transcriptional regulator [Polaribacter dokdonensis
MED152]
Length = 218
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 18/180 (10%)
Query: 18 EDTLKAIYSLEED---GLPVNA------DRLAALTGL--KISNQQYILDLLHKQGYCLPP 66
E+ LKAIY LE D G+ NA + ++++ + K+S+++ +L +K
Sbjct: 7 ENYLKAIYHLESDSKVGISTNAIAKSLATKASSVSDMIKKLSDKEVVLYKKYK------- 59
Query: 67 DSHLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRL 126
LT+ G+K A ++R+HRL E +L E + E H A + EH S + ++ L
Sbjct: 60 GVTLTKLGKKTAANIVRKHRLWEVFLVEKLNFSWDEVHDVAEQLEHIKSQKLINQLDALL 119
Query: 127 GNPLFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRG 186
G P DPHGDPIP E+G + S++ L + + + D +D + ++ G G
Sbjct: 120 GFPTHDPHGDPIPDEDGVINSIDKSLLSTLNVNETGVCVGVNDSSSDFLQFLDKKGITLG 179
>gi|15827486|ref|NP_301749.1| iron dependent repressor [Mycobacterium leprae TN]
gi|20532135|sp|Q9CCB5|IDER_MYCLE Iron-dependent repressor ideR
gi|13093036|emb|CAC31394.1| iron dependent repressor [Mycobacterium leprae]
Length = 230
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 64/226 (28%), Positives = 102/226 (45%), Gaps = 18/226 (7%)
Query: 12 DVRRLSEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYC-LPPDSHL 70
D+ +E L+ IY LEE+G+ R+A + + + G + + HL
Sbjct: 3 DLVDTTEMYLRTIYDLEEEGVTPLRARIAERLEQSGPTVSQTVSRMERDGLLRVAGNRHL 62
Query: 71 --TESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
T GR A+ V+R+HRL E+ L + G E H +AC+ EH +S++ + R+ L N
Sbjct: 63 ELTTKGRAMAIAVMRKHRLAERLLVDVIGLPWEEVHAEACRWEHVMSEDVERRLIKVLNN 122
Query: 129 PLFDPHGDPIP-------TEEGEVQSVEGVHADELPDDSYVRVI------HIEDEPADLY 175
P P G+PIP + + + V ELP S V V+ H++D+ DL
Sbjct: 123 PTTSPFGNPIPGLLDLGAGPDASAANAKLVRLTELPSGSPVAVVVRQLTEHVQDD-IDLI 181
Query: 176 RQIETIGFFRGAVFHLLRTDTDGVHLSFEG-EQFLLPQEAAHNLTV 220
+++ G A + + V + G E LP E AH + V
Sbjct: 182 TRLKDTGVVPNARVTVETSPAGNVIIIIPGHENVTLPHEMAHAVKV 227
>gi|126645074|ref|ZP_01717618.1| iron dependent repressor [Algoriphagus sp. PR1]
gi|126578485|gb|EAZ82649.1| iron dependent repressor [Algoriphagus sp. PR1]
Length = 219
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 18 EDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDSH---LTESG 74
E+ LKA+++L + VN LA + + ++ + K G+ + LT+ G
Sbjct: 7 ENYLKALFNLANEENEVNISELAGQMQVSMPTVNSMVKNMQKNGWVIYEKYRPVTLTKDG 66
Query: 75 RKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDPH 134
+K A +IR+HRL E +L G+ E H A + EH + + ER+ LG P DPH
Sbjct: 67 QKAAALIIRKHRLTEMFLVNKMGFGWEEVHEIAEQVEHIHAGKFFERMDEMLGFPTVDPH 126
Query: 135 GDPIPTEEGEVQSVEGV 151
G PIP + G VQ V V
Sbjct: 127 GSPIPDKNGRVQEVNYV 143
>gi|126662849|ref|ZP_01733848.1| Mn-dependent transcriptional regulator [Flavobacteria bacterium
BAL38]
gi|126626228|gb|EAZ96917.1| Mn-dependent transcriptional regulator [Flavobacteria bacterium
BAL38]
Length = 215
Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 12/212 (5%)
Query: 18 EDTLKAIYSLE-EDGLPVNADRLAALTGLKISNQQYILDLLHKQG------YCLPPDSHL 70
E+ +K IY L VN + +A + K S+ + D+L K Y L
Sbjct: 6 ENYIKVIYHLSLVSPKGVNTNAIAGMLDTKASS---VTDMLKKLADKNLVTYQKYQGVTL 62
Query: 71 TESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPL 130
TE+G A ++R+HRL E +L E + E H A + EH S++ R+ LG P
Sbjct: 63 TENGFYAAKMIVRKHRLWEVFLVEKLKFSWDEVHEIAEELEHIKSEKLINRLDDFLGFPS 122
Query: 131 FDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRGAVFH 190
FDPHGDPIP E G ++ ++ E + + ++D A+ + ++ G+V
Sbjct: 123 FDPHGDPIPDENGIIKKMDKHLLSEAESNVEYHCVGVKDSSAEFLQYLDKQKIALGSVIK 182
Query: 191 LLRTDTDGVHLS--FEGEQFLLPQEAAHNLTV 220
++ + LS +G++ +L + A NL V
Sbjct: 183 IIEKEEYDKTLSILIDGKKIMLSNKIATNLYV 214
>gi|145296525|ref|YP_001139346.1| hypothetical protein cgR_2435 [Corynebacterium glutamicum R]
gi|140846445|dbj|BAF55444.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 220
Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 56/155 (36%), Positives = 79/155 (50%), Gaps = 3/155 (1%)
Query: 18 EDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYC-LPP--DSHLTESG 74
ED L A++ EE +LA + G+ S L L+ +G+ P D LT +G
Sbjct: 11 EDYLTALFRAEEWDEEPTTGKLAEVIGVTASTVSATLKKLNLEGFVNYRPYGDIELTPAG 70
Query: 75 RKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDPH 134
R A+ VIRR R++E YLSE G E H +A EH +S E++ +G P DPH
Sbjct: 71 RDIAINVIRRRRIIETYLSEKLGLGAHELHGEADLLEHAVSPRVLEKMFQAVGYPTLDPH 130
Query: 135 GDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIED 169
GDPIPTE GE+ +G+ +L + V + D
Sbjct: 131 GDPIPTESGEMSINDGLMLLDLNAGASATVTRVRD 165
>gi|149277982|ref|ZP_01884121.1| Mn-dependent transcriptional regulator [Pedobacter sp. BAL39]
gi|149231180|gb|EDM36560.1| Mn-dependent transcriptional regulator [Pedobacter sp. BAL39]
Length = 217
Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 62/216 (28%), Positives = 106/216 (49%), Gaps = 20/216 (9%)
Query: 18 EDTLKAIYSLEEDG-LPVNAD--------RLAALTGL--KISNQQYILDLLHKQGYCLPP 66
E+ LK IY L E+ PV + R A++T + K+++++ ++D QG
Sbjct: 7 ENYLKIIYHLSENNHQPVQTNAIAEKMQTRAASVTDMIKKLADKE-LIDYKKYQGV---- 61
Query: 67 DSHLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRL 126
LTE G+ A+ ++RRHRL E +L E ++ E H A + EH S E ER+ L
Sbjct: 62 --KLTEKGKLAAINIVRRHRLWEVFLVEKLNFKWDEVHDIAEELEHIRSAELIERLDEFL 119
Query: 127 GNPLFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRG 186
P DPHGDPIP ++G V V +L + ++ + + + + +E +G G
Sbjct: 120 AFPKNDPHGDPIPDKQGHFDQVPFVKLSKLKLRDHGLIMGVSEHSSAFLKHLEKLGMTLG 179
Query: 187 AVFHLLR-TDTDG-VHLSFEGEQFLLPQEAAHNLTV 220
++ T+ DG + L E + + +E A ++ +
Sbjct: 180 KDVKVITITEFDGSIELLVEEKHISVTREVAKHILI 215
>gi|111023768|ref|YP_706740.1| Fe(2+)-dependent transcriptional regulator [Rhodococcus sp. RHA1]
gi|110823298|gb|ABG98582.1| Fe(2+)-dependent transcriptional regulator [Rhodococcus sp. RHA1]
Length = 230
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 46/131 (35%), Positives = 71/131 (54%), Gaps = 3/131 (2%)
Query: 12 DVRRLSEDTLKAIYSLEEDGL-PVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDSHL 70
D+ +E L+ IY LEE+G+ P+ A L + Q + + + D HL
Sbjct: 3 DLVDTTEMYLRTIYDLEEEGVVPLRARIAERLEQSGPTVSQTVARMERDGLLLVAGDRHL 62
Query: 71 --TESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
TE GR+ A+ V+R+HRL E+ L + G + E H +AC+ EH +S+E + R+ L N
Sbjct: 63 ELTEKGRELAVSVMRKHRLAERLLVDVIGLKWEEVHAEACRWEHVMSEEVERRLVEVLNN 122
Query: 129 PLFDPHGDPIP 139
P P+G+PIP
Sbjct: 123 PTTSPYGNPIP 133
>gi|7110452|gb|AAF36925.1|AF221951_1 transcriptional regulatory protein DtxR [Rhodococcus erythropolis]
Length = 228
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 45/131 (34%), Positives = 71/131 (54%), Gaps = 3/131 (2%)
Query: 12 DVRRLSEDTLKAIYSLEEDGL-PVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDSHL 70
D+ +E L+ IY LEE+G+ P+ A L + Q + + + D HL
Sbjct: 3 DLVDTTEMYLRTIYDLEEEGVVPLRARIAERLEQSGPTVSQTVARMERDGLLMVAGDRHL 62
Query: 71 --TESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
T+ GR A+ V+R+HRL E+ L + G + + H +AC+ EH +S+E + R+ V L N
Sbjct: 63 ELTDKGRDLAISVMRKHRLAERLLVDVIGLKWEDVHAEACRWEHVMSEEVERRLVVVLNN 122
Query: 129 PLFDPHGDPIP 139
P P+G+PIP
Sbjct: 123 PTTSPYGNPIP 133
>gi|145594003|ref|YP_001158300.1| iron dependent repressor [Salinispora tropica CNB-440]
gi|145303340|gb|ABP53922.1| iron dependent repressor [Salinispora tropica CNB-440]
Length = 232
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 63/218 (28%), Positives = 98/218 (44%), Gaps = 15/218 (6%)
Query: 17 SEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGY-CLPPDSHLT--ES 73
+E L+ I LEE+G+P R+A + + + G + D HLT ++
Sbjct: 13 TEMYLRTILELEEEGVPPLRARIAERLRQSGPTVSQTVARMERDGLLTVEGDRHLTLTDA 72
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
GR A+ V+R+HRL E L G E H +AC+ EH +SD ++R+ L P P
Sbjct: 73 GRDAAVSVMRKHRLAELLLVNVIGMPYEEAHEEACRWEHVMSDAVEQRVYDLLNRPTRSP 132
Query: 134 HGDPIPTEEG-------EVQSVEGVHADELPDDSYV----RVIHIEDEPADLYRQIETIG 182
+G+PIP E + EG P S R+ +D+ RQ+ G
Sbjct: 133 YGNPIPGLEALGSAGPSAAEPAEGERNLAFPGLSGTVVVRRICESLQTNSDVLRQLHAAG 192
Query: 183 FFRGAVFHLLRTDTDGVHLSFEGEQFLLPQEAAHNLTV 220
GA + + + DGV + G++ LP+E A + V
Sbjct: 193 VDPGATVTVAQ-ERDGVSIDRYGDRVRLPREVASRVFV 229
>gi|118618674|ref|YP_907006.1| iron-dependent repressor and activator IdeR [Mycobacterium ulcerans
Agy99]
gi|118570784|gb|ABL05535.1| iron-dependent repressor and activator IdeR [Mycobacterium ulcerans
Agy99]
Length = 230
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 64/226 (28%), Positives = 101/226 (44%), Gaps = 18/226 (7%)
Query: 12 DVRRLSEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYC-LPPDSHL 70
D+ +E L+ IY LEE+G+ R+A + + + G + D HL
Sbjct: 3 DLVDTTEMYLRTIYDLEEEGVTPLRARIAERLEQSGPTVSQTVSRMERDGLLRVAGDRHL 62
Query: 71 --TESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
T+ GR A+ V+R+HRL E+ L + G E H +AC+ EH +S++ + R+ L N
Sbjct: 63 ELTDKGRALAVAVMRKHRLAERLLVDVIGLPWEEVHAEACRWEHVMSEDVERRLVKVLNN 122
Query: 129 PLFDPHGDPIP-------TEEGEVQSVEGVHADELPDDSYVRVI------HIEDEPADLY 175
P P G+PIP E + V ELP S V V+ H++ + DL
Sbjct: 123 PTTSPFGNPIPGLLDLGVGPESDSYEANLVRLTELPSGSPVAVVVRQLTEHVQGD-IDLI 181
Query: 176 RQIETIGFFRGAVFHLLRTDTDGVHLSFEG-EQFLLPQEAAHNLTV 220
+++ G A + + GV + G E LP A+ + V
Sbjct: 182 SRLKDAGVVPNARVTVETSPAGGVTILIPGHENVTLPHAMAYAVKV 227
>gi|146298695|ref|YP_001193286.1| iron dependent repressor [Flavobacterium johnsoniae UW101]
gi|146153113|gb|ABQ03967.1| iron dependent repressor [Flavobacterium johnsoniae UW101]
Length = 217
Score = 72.0 bits (175), Expect = 5e-11, Method: Composition-based stats.
Identities = 60/215 (27%), Positives = 102/215 (47%), Gaps = 18/215 (8%)
Query: 18 EDTLKAIY----SLEEDGLPVNADRLAALTGLKISNQQYIL------DLLHKQGYCLPPD 67
E+ LK+IY SLE + V+ + +A + K S+ +L DL++ + Y
Sbjct: 6 ENYLKSIYHLTASLETE---VSTNAIAEMMETKASSVTDMLKKLAEKDLVNYKKY---QG 59
Query: 68 SHLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLG 127
LTE+G+ A ++R+HRL E +L E + E H A + EH S++ R+ LG
Sbjct: 60 VSLTENGKLAAKMIVRKHRLWEVFLVEKLNFSWDEVHDIAEQLEHIKSEQLINRLDDFLG 119
Query: 128 NPLFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRGA 187
NP DPHGDPIP G + +E EL + + ++D ++ + ++ G+
Sbjct: 120 NPTEDPHGDPIPDANGRIIKIEKQLLSELEVNQTGVCVGVKDTSSEFLKYLDKQEIALGS 179
Query: 188 VFHLLRTDTD--GVHLSFEGEQFLLPQEAAHNLTV 220
L ++ V + +G + + + A NL V
Sbjct: 180 KIEFLSKESFDLSVKIKVDGRELSISNKIASNLFV 214
>gi|88711384|ref|ZP_01105472.1| iron dependent repressor [Flavobacteriales bacterium HTCC2170]
gi|88710325|gb|EAR02557.1| iron dependent repressor [Flavobacteriales bacterium HTCC2170]
Length = 218
Score = 71.2 bits (173), Expect = 7e-11, Method: Composition-based stats.
Identities = 51/134 (38%), Positives = 72/134 (53%), Gaps = 8/134 (5%)
Query: 18 EDTLKAIYSL---EEDGLPVNADRLAALTGLKISNQQYILDLLHKQG---YCLPPDSHLT 71
ED +KAIY L + D + NA +A K S+ +L L +G Y LT
Sbjct: 6 EDYIKAIYHLGKIKADSVSTNA--IAKKMETKPSSVSDMLQKLSDKGLVNYKKYKGVTLT 63
Query: 72 ESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLF 131
E+G AL ++R+HRL E +L E G+ E H A + EH S++ + + L P +
Sbjct: 64 EAGVVTALNLVRKHRLWEVFLVEKLGFTWDEVHEVAEQLEHIKSEKLIDGLDQLLKFPKY 123
Query: 132 DPHGDPIPTEEGEV 145
DPHGDPIPT+EGE+
Sbjct: 124 DPHGDPIPTKEGEL 137
>gi|62391367|ref|YP_226769.1| metal-dependent transcriptional regulator [Corynebacterium
glutamicum ATCC 13032]
gi|21325300|dbj|BAB99921.1| Mn-dependent transcriptional regulator [Corynebacterium glutamicum
ATCC 13032]
gi|41326708|emb|CAF21190.1| metal-dependent transcriptional regulator [Corynebacterium
glutamicum ATCC 13032]
Length = 220
Score = 71.2 bits (173), Expect = 8e-11, Method: Composition-based stats.
Identities = 56/155 (36%), Positives = 78/155 (50%), Gaps = 3/155 (1%)
Query: 18 EDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYC-LPP--DSHLTESG 74
ED L A++ EE +LA + G+ S L L+ +G+ P D LT +G
Sbjct: 11 EDYLTALFRAEEWDEEPTTGKLAEVIGVTASTVSATLKKLNPEGFVNYRPYGDIELTPAG 70
Query: 75 RKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDPH 134
R A+ VIRR R++E YLSE G E H +A EH +S E++ +G P DPH
Sbjct: 71 RDIAINVIRRRRIIETYLSEKLGLGAHELHGEADLLEHAVSPLVLEKMFQAVGYPTLDPH 130
Query: 135 GDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIED 169
GDPIPTE GE+ +G+ L + V + D
Sbjct: 131 GDPIPTESGEMTINDGLMLLGLKAGASATVTRVRD 165
>gi|21674552|ref|NP_662617.1| iron-dependent repressor [Chlorobium tepidum TLS]
gi|21647748|gb|AAM72959.1| iron-dependent repressor [Chlorobium tepidum TLS]
Length = 271
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 3/173 (1%)
Query: 17 SEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQG---YCLPPDSHLTES 73
SE L+ I+ L E V+ +A G +S + L + G + +T
Sbjct: 35 SEMYLQVIWRLTEREREVSVSDIAKAIGHSLSTVSEKIVRLTEAGLLRHEWREGVSMTPK 94
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
GR+ A + +R+ RL+E +L + +GY E H +AC+ EH +SD + + LG P+ DP
Sbjct: 95 GRQAACRTLRKRRLVETFLFKMAGYGIHELHEEACRLEHVISDRLSDALDRLLGYPMHDP 154
Query: 134 HGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRG 186
HG PIP +G ++S + + VR+ + ++ I +G G
Sbjct: 155 HGHPIPAHDGALRSELLEPLSTVDEGRTVRIAQLRSADPEVLEYIAQLGLLPG 207
>gi|21227136|ref|NP_633058.1| Transcriptional repressor [Methanosarcina mazei Go1]
gi|20905467|gb|AAM30730.1| Transcriptional repressor [Methanosarcina mazei Go1]
Length = 217
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 55/213 (25%), Positives = 101/213 (47%), Gaps = 6/213 (2%)
Query: 15 RLSEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYC-LPP--DSHLT 71
RL E +Y + ++ P ++A + + ++ LH G+ P LT
Sbjct: 5 RLEEYLETILYLITKNQSPAKTKQIAEELNVSSPSVTEMIKKLHSMGFVEYKPYQGVELT 64
Query: 72 ESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLF 131
E G + A+++ R+H++LE +L+E ++ E H +AC+ EH +SD ERI LGNP +
Sbjct: 65 EKGAEEAVRIKRKHQVLETFLAEVLDFDRREAHKEACELEHAVSDSVLERIYDFLGNPEY 124
Query: 132 DPHGDPIPTEEGEVQSVEG-VHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRGAVFH 190
P G PI ++ +Q E + DE+ + S V + P + ++ ++G G
Sbjct: 125 CPDGHPINIDKNNLQREEAFIPLDEMKEGSSGTVARVT-LPRETKERLTSLGIIAGEDIE 183
Query: 191 LLRTDTDG-VHLSFEGEQFLLPQEAAHNLTVMP 222
+ R G + + G + L ++ A + + P
Sbjct: 184 VRRKQKQGCISVMAVGSEIALGRDIAKKIFITP 216
>gi|10334814|gb|AAG16749.1|AF277002_1 iron dependent regulatory protein [Rhodococcus equi]
Length = 230
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 64/227 (28%), Positives = 108/227 (47%), Gaps = 22/227 (9%)
Query: 12 DVRRLSEDTLKAIYSLEEDGL-PVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDSHL 70
D+ +E L+ IY LEE+G+ P+ A L + Q + + + D HL
Sbjct: 5 DLVDTTEMYLRTIYDLEEEGVVPLRARIAERLEQSGPTVSQTVARMERDGLLQVAGDRHL 64
Query: 71 --TESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
TE GR A+ V+R+HRL E+ L + G E + H +AC+ EH +S++ + R+ L N
Sbjct: 65 ELTEKGRNLAVAVMRKHRLAERLLVDIIGLEWDQVHAEACRWEHVMSEDVERRLVEVLKN 124
Query: 129 PLFDPHGDPIP--------TEEGEVQSVEGVHADELPDDSYVRVI------HIEDEPADL 174
P P+G+PIP G +++ + ++P V+ H++ +P +L
Sbjct: 125 PTTSPYGNPIPGLADLGLDRPVGNAETL--IRLTDVPPGKPTAVVVRRLAEHVQSDP-EL 181
Query: 175 YRQIETIGFFRGAVFHLLRTDTDGVHLSFEG-EQFLLPQEAAHNLTV 220
Q+ G A + T V ++ G ++F LP+E AH + V
Sbjct: 182 IGQLREAGVVPDARV-TVETRPGSVTITASGHDEFDLPEEMAHAVQV 227
>gi|19553726|ref|NP_601728.1| Mn-dependent transcriptional regulator [Corynebacterium glutamicum
ATCC 13032]
Length = 211
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 56/155 (36%), Positives = 78/155 (50%), Gaps = 3/155 (1%)
Query: 18 EDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYC-LPP--DSHLTESG 74
ED L A++ EE +LA + G+ S L L+ +G+ P D LT +G
Sbjct: 2 EDYLTALFRAEEWDEEPTTGKLAEVIGVTASTVSATLKKLNPEGFVNYRPYGDIELTPAG 61
Query: 75 RKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDPH 134
R A+ VIRR R++E YLSE G E H +A EH +S E++ +G P DPH
Sbjct: 62 RDIAINVIRRRRIIETYLSEKLGLGAHELHGEADLLEHAVSPLVLEKMFQAVGYPTLDPH 121
Query: 135 GDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIED 169
GDPIPTE GE+ +G+ L + V + D
Sbjct: 122 GDPIPTESGEMTINDGLMLLGLKAGASATVTRVRD 156
>gi|67919818|ref|ZP_00513379.1| Iron dependent repressor:FeoA [Chlorobium limicola DSM 245]
gi|67782565|gb|EAM41983.1| Iron dependent repressor:FeoA [Chlorobium limicola DSM 245]
Length = 241
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 3/173 (1%)
Query: 17 SEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCL---PPDSHLTES 73
SE ++ I+ L + +AA G +S + L GY + L+E
Sbjct: 6 SEMYIQTIFRLTRKQSNASISEVAAALGFSLSTVSEKVKHLTHDGYLVHEWREHVSLSEK 65
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
G+ A +++R+ RL+E +L + +GY E H +AC+ EH +S+ + I LG P DP
Sbjct: 66 GQITACRILRKRRLIETFLYKFAGYGLHEVHDEACRLEHVISERLADAIEGMLGFPKTDP 125
Query: 134 HGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRG 186
HG IP+++G + + E D+ V V ++ +L + I +G G
Sbjct: 126 HGHDIPSKKGILPERKLTTLYETADEKSVTVAALQTTDPELLKYINDMGLTPG 178
>gi|28493079|ref|NP_787240.1| iron-dependent repressor ideR [Tropheryma whipplei str. Twist]
gi|28476119|gb|AAO44209.1| iron-dependent repressor ideR [Tropheryma whipplei str. Twist]
Length = 226
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 4/137 (2%)
Query: 12 DVRRLSEDTLKAIYSLEEDGL-PVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDSH- 69
D+ +E L+ I +LEE+G+ P+ R++ G + + + G + +
Sbjct: 3 DLVDTTEMYLRTIVNLEEEGISPIIKARISERIGHTAPTVFQTIARMQRDGLLVVSSNKS 62
Query: 70 --LTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLG 127
LT GRK AL V+R+HRL E L + G E H +AC+ EH +SD +E + L
Sbjct: 63 LILTSKGRKIALSVVRKHRLAEVLLHDVVGLEWEHIHLEACRLEHVMSDHLEEHLRRILN 122
Query: 128 NPLFDPHGDPIPTEEGE 144
NP F +G PIP + +
Sbjct: 123 NPSFTTYGTPIPPADSD 139
>gi|86141000|ref|ZP_01059559.1| probable transcriptional repressor SirR [Flavobacterium sp. MED217]
gi|85832942|gb|EAQ51391.1| probable transcriptional repressor SirR [Leeuwenhoekiella
blandensis MED217]
Length = 216
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 58/209 (27%), Positives = 96/209 (45%), Gaps = 6/209 (2%)
Query: 18 EDTLKAIYSLE-EDGLPVNADRLAALTGLKISNQQYILDLLHKQG---YCLPPDSHLTES 73
E+ LK+IY+L+ E V+ + L+ K ++ ++ L ++G Y L +S
Sbjct: 6 ENYLKSIYTLQKEHPKGVSTNVLSKYLDTKPASATEMIKKLDEKGLVHYQPYQGVILKDS 65
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
G ALKVIR+HRL E +L+ + E H A + EH SD+ + LG P DP
Sbjct: 66 GAVSALKVIRKHRLWETFLANKLDFSWDEIHDVAEQLEHIKSDKLIRELDKFLGYPKHDP 125
Query: 134 HGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRGAVFHLLR 193
HGDPIP E G + +E +L I + D + + ++ G+V ++
Sbjct: 126 HGDPIPDEAGNIAKLEKKRVSQLQPGDTGTCIGVNDTSSSFLQFLDQQNIRLGSVLEIVN 185
Query: 194 TDT--DGVHLSFEGEQFLLPQEAAHNLTV 220
+ + + + LL Q A ++ V
Sbjct: 186 IQEFDKSMTVRIDDRELLLSQIATEHIYV 214
>gi|124009310|ref|ZP_01693989.1| iron dependent repressor [Microscilla marina ATCC 23134]
gi|123985087|gb|EAY25031.1| iron dependent repressor [Microscilla marina ATCC 23134]
Length = 224
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/164 (29%), Positives = 83/164 (50%), Gaps = 18/164 (10%)
Query: 18 EDTLKAIYSL-----EEDGLP-------VNADRLAALTGLKISNQQYILDLLHKQGYCLP 65
ED LKAIY L E++G+ +N + +K +Q+ +++ + +G L
Sbjct: 7 EDYLKAIYQLSETHGEKEGISTNEIAKKINISAASVSDMIKKLSQKEMVNHMKYKGVTL- 65
Query: 66 PDSHLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVR 125
T+ GR+ A+ ++R+HRL E +L + E H A + EH S +R+
Sbjct: 66 -----TKQGRQIAINLVRKHRLWETFLVRKLHFSWDEVHDVAEQLEHIQSPTLIQRLDEF 120
Query: 126 LGNPLFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIED 169
L P +DPHGDPIP ++GE+ + + E P ++V+ +E+
Sbjct: 121 LEFPAYDPHGDPIPNDKGEIVKRKKISLQEAPLHQPLKVLAVEE 164
>gi|28572287|ref|NP_789067.1| iron-dependent repressor [Tropheryma whipplei TW08/27]
gi|28410418|emb|CAD66804.1| iron-dependent repressor [Tropheryma whipplei TW08/27]
Length = 217
Score = 69.3 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 4/128 (3%)
Query: 21 LKAIYSLEEDGL-PVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDSH---LTESGRK 76
L+ I +LEE+G+ P+ R++ G + + + G + + LT GRK
Sbjct: 3 LRTIVNLEEEGISPIIKARISERIGHTAPTVFQTIARMQRDGLLVVSSNKSLILTSKGRK 62
Query: 77 YALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDPHGD 136
AL V+R+HRL E L + G E H +AC+ EH +SD +E + L NP F +G
Sbjct: 63 IALSVVRKHRLAEVLLHDVVGLEWEHIHLEACRLEHVMSDHLEEHLRRILNNPSFTTYGT 122
Query: 137 PIPTEEGE 144
PIP + +
Sbjct: 123 PIPPADSD 130
>gi|54025749|ref|YP_119991.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
gi|54017257|dbj|BAD58627.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
Length = 228
Score = 68.9 bits (167), Expect = 4e-10, Method: Composition-based stats.
Identities = 70/232 (30%), Positives = 106/232 (45%), Gaps = 28/232 (12%)
Query: 12 DVRRLSEDTLKAIYSLEEDGL-PVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDSHL 70
D+ +E L+ IY LEE+G+ P+ A L + Q + + + D HL
Sbjct: 3 DLVDTTEMYLRTIYDLEEEGVVPLRARIAERLEQSGPTVSQTVARMERDGLLLVAGDRHL 62
Query: 71 --TESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
TE GR A+ V+R+HRL E+ L + G + H +AC+ EH +S++ + R+ L +
Sbjct: 63 ELTEKGRSMAVAVMRKHRLAERLLVDIIGLDWQNVHAEACRWEHVMSEDVERRLVEVLNH 122
Query: 129 PLFDPHGDPIP--TEEG----EVQSVEGVHADELPDDSYVRVI------HIEDEPADLYR 176
P P+G+PIP E G + V +LP V+ HI+++P
Sbjct: 123 PTTSPYGNPIPGLDELGIAAPPSDEEQLVRLSDLPQGQGQAVVIRRLAEHIQNDP----- 177
Query: 177 QIETIGFFRGA-VFHLLRTDTD----GVHLSFEG-EQFLLPQEAAHNLTVMP 222
E IG R A V R + V ++ G E F LP E AH + V P
Sbjct: 178 --EVIGRLREAGVVPDARVTVECKPGAVVITVPGHEGFELPDEMAHAVQVKP 227
>gi|83855826|ref|ZP_00949355.1| putative transcriptional regulator [Croceibacter atlanticus
HTCC2559]
gi|83849626|gb|EAP87494.1| putative transcriptional regulator [Croceibacter atlanticus
HTCC2559]
Length = 229
Score = 68.9 bits (167), Expect = 4e-10, Method: Composition-based stats.
Identities = 60/223 (26%), Positives = 102/223 (45%), Gaps = 7/223 (3%)
Query: 5 SNLLFRFDVRRLSEDTLKAIYSL--EEDGLPVNADRLA---ALTGLKISNQQYILDLLHK 59
+N L ++ + ED LKAI+ L + D V ++LA ++ ++N L L
Sbjct: 2 TNKLNSIELTKSEEDYLKAIFQLMLDSDNEKVGNNKLADYLNISPASVNNMVKKLKLKKL 61
Query: 60 QGYCLPPDSHLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQ 119
LT+SGR A+ +IR+HRL E +LS++ + E H A + EH S +
Sbjct: 62 LKSERYAKLQLTDSGRDIAVGLIRKHRLWETFLSKYLNFTWDEVHDVAEQLEHVKSPKLI 121
Query: 120 ERIAVRLGNPLFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIE 179
+ + P DPHG+ IP EG ++ E V L + ++I + D + R +
Sbjct: 122 NELDRFMDFPKKDPHGEVIPDAEGNYRTFEKVTLASLDSGTICKLISVNDGSVEFLRYVS 181
Query: 180 TIGFFRGAVFHLL--RTDTDGVHLSFEGEQFLLPQEAAHNLTV 220
IG + ++ R+ + V + F + Q+ A N+ V
Sbjct: 182 EIGLALSSEIKVIEKRSFDNSVKIEFNDSIETVSQKFADNVFV 224
>gi|134098357|ref|YP_001104018.1| iron (metal) dependent repressor, DtxR family [Saccharopolyspora
erythraea NRRL 2338]
gi|133910980|emb|CAM01093.1| iron (metal) dependent repressor, DtxR family [Saccharopolyspora
erythraea NRRL 2338]
Length = 191
Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 46/135 (34%), Positives = 70/135 (51%), Gaps = 16/135 (11%)
Query: 67 DSHL--TESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAV 124
D HL T++GR A+ V+R+HRL E+ L + G E + H +AC+ EH +S+ + ++
Sbjct: 19 DRHLELTKAGRARAISVMRKHRLAERLLVDVIGLEWEQVHLEACRWEHVMSEAVERKLVK 78
Query: 125 RLGNPLFDPHGDPIP--TEEGEVQSVEGVHADELPDDSYVR-----------VIHIEDEP 171
LGNP P+G+PIP E G SVE V D D R H++ +P
Sbjct: 79 LLGNPTTSPYGNPIPGLDELGVGDSVEPVDTDLRRVDEVARSGGGRALVCRIAEHVQLDP 138
Query: 172 ADLYRQIETIGFFRG 186
DL +++ +G G
Sbjct: 139 -DLMSELKKVGVVPG 152
>gi|149277010|ref|ZP_01883152.1| transcriptional regulator [Pedobacter sp. BAL39]
gi|149231887|gb|EDM37264.1| transcriptional regulator [Pedobacter sp. BAL39]
Length = 226
Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 7/188 (3%)
Query: 18 EDTLKAIYSLE---EDGLPVNADRLAALTGLKISNQQYILDLLHKQ---GYCLPPDSHLT 71
E+ LKA+ L E+ + +AA G+K + +L L ++ Y LT
Sbjct: 7 ENYLKALLKLSFQNEEKPEAGTNEMAAYLGVKPATATDMLKKLKEKELVTYKKYGKILLT 66
Query: 72 ESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLF 131
E GR + ++R+HRL E +L E + E H A + EH S + ++ L P F
Sbjct: 67 ELGRAKGIAILRKHRLWETFLYEKLDFSWDEVHEVAEQLEHIQSPKLVNKLEEFLDFPEF 126
Query: 132 DPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRGAVFHL 191
DPHGDPIP GE+ +V+ V ++ +V+ ++D + +E + G + +
Sbjct: 127 DPHGDPIPRANGELPTVDKVLLTDVKAGESCQVVAVKDTSTVFLQYLEKLQVTIGTLVKV 186
Query: 192 LR-TDTDG 198
+ D DG
Sbjct: 187 MEVVDFDG 194
>gi|147920271|ref|YP_685959.1| Fe-dependent transcription repressor (FeoA family) [uncultured
methanogenic archaeon RC-I]
gi|110621355|emb|CAJ36633.1| Fe-dependent transcription repressor (FeoA family) [uncultured
methanogenic archaeon RC-I]
Length = 222
Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 50/167 (29%), Positives = 85/167 (50%), Gaps = 8/167 (4%)
Query: 14 RRLSEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYC--LPPD-SHL 70
+ ++E+ L+ I L G +A G+K + +L L QGY +P + + L
Sbjct: 3 KNITEEYLETILYLTRGGARAKTRDIAQAMGIKPPSVSEMLLKLRDQGYIDYMPYEGAAL 62
Query: 71 TESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPL 130
TE GR A+++ R+H+LLE +L G + H +AC+ EH +SD ERI LG+P
Sbjct: 63 TEEGRAEAIRMERKHQLLETFLVGTLGVDTDTAHDEACELEHSVSDNTMERICSYLGHPR 122
Query: 131 FDPHGDPIPT----EEGEVQSVEGVHADELPDDSYVRVIHIEDEPAD 173
+ P PI E+ + S+ + +E ++ +RVI +++ D
Sbjct: 123 YCPDDHPITKGECCEKADSVSMPLLELNE-GEEGVIRVITLDNNTRD 168
>gi|134104578|pdb|2ISZ|A Chain A, Crystal Structure Of A Two-Domain Ider-Dna Complex Crystal
Form I
gi|134104579|pdb|2ISZ|B Chain B, Crystal Structure Of A Two-Domain Ider-Dna Complex Crystal
Form I
gi|134104580|pdb|2ISZ|C Chain C, Crystal Structure Of A Two-Domain Ider-Dna Complex Crystal
Form I
gi|134104581|pdb|2ISZ|D Chain D, Crystal Structure Of A Two-Domain Ider-Dna Complex Crystal
Form I
gi|134104584|pdb|2IT0|A Chain A, Crystal Structure Of A Two-Domain Ider-Dna Complex Crystal
Form Ii
gi|134104585|pdb|2IT0|B Chain B, Crystal Structure Of A Two-Domain Ider-Dna Complex Crystal
Form Ii
gi|134104586|pdb|2IT0|C Chain C, Crystal Structure Of A Two-Domain Ider-Dna Complex Crystal
Form Ii
gi|134104587|pdb|2IT0|D Chain D, Crystal Structure Of A Two-Domain Ider-Dna Complex Crystal
Form Ii
Length = 157
Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 3/126 (2%)
Query: 17 SEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYC-LPPDSHL--TES 73
+E L+ IY LEE+G+ R+A + + + G + D HL TE
Sbjct: 8 TEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGDRHLELTEK 67
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
GR A+ V+R+HRL E+ L + G E H +AC+ EH +S++ + R+ L NP P
Sbjct: 68 GRALAIAVMRKHRLAERLLVDVIGLPWEEVHAEACRWEHVMSEDVERRLVKVLNNPTTSP 127
Query: 134 HGDPIP 139
G+PIP
Sbjct: 128 FGNPIP 133
>gi|6573375|pdb|1B1B|A Chain A, Iron Dependent Regulator
Length = 140
Score = 68.2 bits (165), Expect = 6e-10, Method: Composition-based stats.
Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 3/126 (2%)
Query: 17 SEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYC-LPPDSHL--TES 73
+E L+ IY LEE+G+ R+A + + + G + D HL TE
Sbjct: 8 TEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGDRHLELTEK 67
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
GR A+ V+R+HRL E+ L + G E H +AC+ EH +S++ + R+ L NP P
Sbjct: 68 GRALAIAVMRKHRLAERLLVDVIGLPWEEVHAEACRWEHVMSEDVERRLVKVLNNPTTSP 127
Query: 134 HGDPIP 139
G+PIP
Sbjct: 128 FGNPIP 133
>gi|119882702|ref|ZP_01648970.1| iron (metal) dependent repressor, DtxR family [Salinispora
arenicola CNS205]
gi|119824609|gb|EAX27169.1| iron (metal) dependent repressor, DtxR family [Salinispora
arenicola CNS205]
Length = 232
Score = 67.8 bits (164), Expect = 8e-10, Method: Composition-based stats.
Identities = 60/218 (27%), Positives = 94/218 (43%), Gaps = 15/218 (6%)
Query: 17 SEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDSH---LTES 73
+E L+ I LEE+G+P R+A + + + G LT +
Sbjct: 13 TEMYLRTILELEEEGVPPLRARIAERLRQSGPTVSQTVARMERDGLLTVEGDRQLTLTAA 72
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
GR A+ V+R+HRL E L G E H +AC+ EH +SD ++R+ L P P
Sbjct: 73 GRDAAVSVMRKHRLAELLLVNVIGLPYEEAHEEACRWEHVMSDAVEQRVYDLLNRPTRSP 132
Query: 134 HGDPIPTEEG-------EVQSVEGVHADELPDDSYV----RVIHIEDEPADLYRQIETIG 182
+G+PIP E + G P S R+ +D+ RQ+ G
Sbjct: 133 YGNPIPGLEALGSAGPSATEPAGGERNLAFPGLSGTVVVQRICESLQTDSDVLRQLHAAG 192
Query: 183 FFRGAVFHLLRTDTDGVHLSFEGEQFLLPQEAAHNLTV 220
GA + + + DGV++ G++ LP+E A + V
Sbjct: 193 VDPGATVTVAQ-ERDGVYIDRYGDRVRLPREVASRVFV 229
>gi|91214982|ref|ZP_01251954.1| putative transcriptional regulator [Psychroflexus torquis ATCC
700755]
gi|91186587|gb|EAS72958.1| putative transcriptional regulator [Psychroflexus torquis ATCC
700755]
Length = 217
Score = 67.8 bits (164), Expect = 9e-10, Method: Composition-based stats.
Identities = 55/209 (26%), Positives = 96/209 (45%), Gaps = 12/209 (5%)
Query: 18 EDTLKAIYSLEEDGLP-VNADRLAALTGLKISNQQYILDLLHKQG---YCLPPDSHLTES 73
E+ LKAI L++ VN + LA K S+ ++ L ++ Y +L++S
Sbjct: 7 ENYLKAILHLQKTSKSGVNTNALAEEMQTKASSVTDMVKKLSEKNLVIYKKYQGVYLSDS 66
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
GRK AL+++R+HRL E +L + + E H A + EH SD+ + L P DP
Sbjct: 67 GRKTALQIVRKHRLWEVFLVDKLSFSWDEVHEVAEQLEHIKSDKLITELDKFLKYPKRDP 126
Query: 134 HGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRGAVFHLLR 193
HGDPIP +G+ + L + ++ ++D ++ + ++ G +L
Sbjct: 127 HGDPIPDAKGDFHVANKILLSSLSKGEHGTLVGVKDTSSEFLKYLDKNNIALGKTIQVLD 186
Query: 194 TDTDGVHLSFEGEQFLLPQEAAHNLTVMP 222
+ E ++ +L Q +L V P
Sbjct: 187 KE--------EFDESMLIQTDGKSLRVSP 207
>gi|89889866|ref|ZP_01201377.1| putative Mn- or Fe-dependent transcriptional regulator
[Flavobacteria bacterium BBFL7]
gi|89518139|gb|EAS20795.1| putative Mn- or Fe-dependent transcriptional regulator
[Flavobacteria bacterium BBFL7]
Length = 218
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 3/142 (2%)
Query: 18 EDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQG---YCLPPDSHLTESG 74
E+ +K IY L+E V+ + +A K S+ +L L ++ Y + LT++G
Sbjct: 7 ENYIKTIYHLQEGKNLVSTNDIAGRMSTKASSVTDMLKKLAEKNLAEYIPYKGTRLTQNG 66
Query: 75 RKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDPH 134
A ++IR+HRL E +L E + E H A + EH S + + + LG P +DPH
Sbjct: 67 INCATQIIRKHRLWEVFLVEKLNFSWDEVHEVAEQLEHIQSRKLIDEMDQLLGFPKYDPH 126
Query: 135 GDPIPTEEGEVQSVEGVHADEL 156
GDPIP +G + + +L
Sbjct: 127 GDPIPDAQGNYEKITKTAVSQL 148
>gi|41408993|ref|NP_961829.1| hypothetical protein MAP2895 [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41397352|gb|AAS05212.1| hypothetical protein MAP_2895 [Mycobacterium avium subsp.
paratuberculosis K-10]
Length = 149
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/102 (37%), Positives = 51/102 (50%)
Query: 81 VIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDPHGDPIPT 140
++RRHRLLE +L GY E H +A EH +SD RI +LG P DPHGDPIP
Sbjct: 1 MVRRHRLLETFLVNELGYAWDEVHDEAEVLEHAVSDRLVARIDAKLGFPQRDPHGDPIPA 60
Query: 141 EEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIG 182
+G+V + D V I D +++ R +G
Sbjct: 61 TDGQVPTPPARQLWACGDGDTGTVARISDADSEMLRYFTDVG 102
>gi|154507891|ref|ZP_02043533.1| hypothetical protein ACTODO_00376 [Actinomyces odontolyticus ATCC
17982]
gi|153797525|gb|EDN79945.1| hypothetical protein ACTODO_00376 [Actinomyces odontolyticus ATCC
17982]
Length = 230
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 49/135 (36%), Positives = 75/135 (55%), Gaps = 11/135 (8%)
Query: 12 DVRRLSEDTLKAIYSLEEDGL-PVNA---DRLAALTGLKISNQQYILD---LLHKQGYCL 64
D+ +E LK I LEEDG+ P+ A DRL +G +S ++ LLH G
Sbjct: 8 DLIDTTEMYLKTILELEEDGVTPLRARIVDRLGH-SGPTVSQTVARMERDGLLHVMG--- 63
Query: 65 PPDSHLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAV 124
LT++GR A +V+R+HRL E+ L + G + ++ H +AC+ EH +SD + R+
Sbjct: 64 DRRLELTDTGRARATEVLRKHRLAERLLLDVIGMDWAQVHDEACRWEHVMSDAVEARLEE 123
Query: 125 RLGNPLFDPHGDPIP 139
L N DP+G+P+P
Sbjct: 124 LLSNTCVDPYGNPMP 138
>gi|899422|emb|CAA90388.1| iron repressor [Streptomyces pilosus]
Length = 231
Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 6/155 (3%)
Query: 17 SEDTLKAIYSLEEDGL-PVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDSHL--TES 73
+E L+ I LEE+G+ P+ A L + Q + + + PD HL TE
Sbjct: 8 TEMYLRTILELEEEGVVPMRARIAERLDQSGPTVSQTVARMERDGLVSVAPDRHLELTEE 67
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
GR+ A +V+R+HRL E L + G E + H +AC+ EH +S+ + R+ L +P P
Sbjct: 68 GRRLATRVMRKHRLAECLLVDVIGLEWEQVHAEACRWEHVMSEAVERRVLELLRHPTESP 127
Query: 134 HGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIE 168
+G+PIP E E+ +G AD D+ V + ++
Sbjct: 128 YGNPIPGLE-ELGEKDG--ADPFLDEGMVSLAELD 159
>gi|124027060|ref|YP_001012380.1| predicted Iron dependent repressor [Hyperthermus butylicus DSM
5456]
gi|123977754|gb|ABM80035.1| predicted Iron dependent repressor [Hyperthermus butylicus DSM
5456]
Length = 238
Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 46/125 (36%), Positives = 65/125 (52%), Gaps = 4/125 (3%)
Query: 18 EDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPD---SHLTESG 74
ED L IY LEE +A G+K + IL L +GY + + LT G
Sbjct: 26 EDYLVTIYKLEETLGAARTTLIAKELGVKPATVSKILTKLEAEGYVVREKYRGARLTGLG 85
Query: 75 RKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDPH 134
R+ A ++I +HR++E++L ++ G +P H A EH L DE +RI RLG P P
Sbjct: 86 RRIAERIIWKHRVIERFLHDYVGLDPLRAHRYAHMMEH-LPDEIIDRIYERLGRPGTCPM 144
Query: 135 GDPIP 139
G+PIP
Sbjct: 145 GNPIP 149
>gi|20093126|ref|NP_619201.1| iron dependent repressor [Methanosarcina acetivorans C2A]
gi|19918464|gb|AAM07681.1| iron dependent repressor [Methanosarcina acetivorans C2A]
Length = 224
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 52/213 (24%), Positives = 101/213 (47%), Gaps = 6/213 (2%)
Query: 15 RLSEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYC-LPP--DSHLT 71
R+ E +Y + ++ P ++A + + ++ LH G+ P LT
Sbjct: 8 RIEEYLETILYLITKNQGPAKTKQIAEELNVSSPSVTEMIKKLHSMGFVEYKPYQGVELT 67
Query: 72 ESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLF 131
E G + A+++ R+H++LE +L++ ++ E H +AC+ EH +SD ER+ LGNP +
Sbjct: 68 EKGAEEAVRIKRKHQVLETFLADVLDFDRKEAHREACELEHAVSDSVLERLYDFLGNPEY 127
Query: 132 DPHGDPIPTEEGEVQSVEG-VHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRGAVFH 190
P G PI ++ +Q E + DE+ + S V + P + ++ ++G G
Sbjct: 128 CPDGHPINIDKCNLQREEKFIPLDEMKEGSSGTVARVT-LPRETKERLTSLGILTGEDIE 186
Query: 191 LLRTDTDG-VHLSFEGEQFLLPQEAAHNLTVMP 222
+ R G + + G + L ++ A + + P
Sbjct: 187 VRRKQKQGCISVMAVGSEIALGRDIAKKIFITP 219
>gi|120437529|ref|YP_863215.1| iron dependent repressor [Gramella forsetii KT0803]
gi|117579679|emb|CAL68148.1| iron dependent repressor [Gramella forsetii KT0803]
Length = 218
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 57/211 (27%), Positives = 98/211 (46%), Gaps = 10/211 (4%)
Query: 18 EDTLKAIYSLE---EDGLPVNADRLAALTGLKISNQQYILDLLHKQG---YCLPPDSHLT 71
E+ LKAI+ LE ++G+ NA LA K S+ ++ L + Y L+
Sbjct: 7 ENYLKAIFHLETAYKNGVSTNA--LAEEMQTKASSVTDMIKRLSDKALVNYKKYQGVKLS 64
Query: 72 ESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLF 131
G++ A++VIR+HRL E +L E G+ E H A + EH S++ + L P
Sbjct: 65 SEGKQAAIEVIRKHRLWEVFLVEKLGFNWDEVHEVAEQLEHIKSEKLTNELDKFLEYPKK 124
Query: 132 DPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRGAVFHL 191
DPHGDPIP +G + + L + ++D AD + ++ G +
Sbjct: 125 DPHGDPIPDAKGNFSVGDRILLSALKKGETGICVGVKDSSADFLQYLDKNKISLGKKIQI 184
Query: 192 L-RTDTD-GVHLSFEGEQFLLPQEAAHNLTV 220
L + D D + + +G + ++ + + NL +
Sbjct: 185 LEKEDFDQSMLIKMDGNELMISNQISTNLFI 215
>gi|149176921|ref|ZP_01855530.1| manganese ABC transporter permease protein [Planctomyces maris DSM
8797]
gi|148844176|gb|EDL58530.1| manganese ABC transporter permease protein [Planctomyces maris DSM
8797]
Length = 446
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 16 LSEDTLKAIYSLEE---DGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDSH--L 70
L+ED + +Y +EE D P +A L + + + L L +G + + L
Sbjct: 313 LAEDIIALMYRIEERDPDRKP-DAGYLREILFSRALSTSLSLHYLASRGQITGTNGYYKL 371
Query: 71 TESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPL 130
TE+GR A +++R HRL E YL EH+G H QA + EH+ + +E++
Sbjct: 372 TETGRDQARQLVRSHRLWEHYLVEHAGMSTETIHRQAERLEHFTDRQLREKLNEDTIETD 431
Query: 131 FDPHGDPIPTEE 142
DPHG PIP EE
Sbjct: 432 QDPHGSPIPPEE 443
>gi|148658625|ref|YP_001278830.1| iron dependent repressor [Roseiflexus sp. RS-1]
gi|148570735|gb|ABQ92880.1| iron dependent repressor [Roseiflexus sp. RS-1]
Length = 236
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 61/205 (29%), Positives = 97/205 (47%), Gaps = 12/205 (5%)
Query: 21 LKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPP---DSHLTESGRKY 77
L+ IY L G PV + RLA + ++ + +GY + + LT+ G +
Sbjct: 27 LEVIYYLAARGEPVISARLAEWMHVTPPTVADMVSRMEDRGYIMRDGRGEISLTDEGFRL 86
Query: 78 ALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDPHGDP 137
A ++RRHR+LE++L + G + E H +A + EH LS +ERI +G+ PHG+P
Sbjct: 87 AEAMVRRHRILERFLVDVMGLQWHEIHEEAVRLEHALSPRLEERIEELVGDAATCPHGNP 146
Query: 138 IPTEEGEVQSVEG-VHADELPDDSYVRVIHIEDEPAD---LYRQIETIGFFRGAVFHLLR 193
IP G S G V D++ + I +E + L R ++ G F ++
Sbjct: 147 IP---GRCASYTGSVRLDQVAPGGVFTLRRISEEAEEDTVLIRYLQNSHLVPGERFAIID 203
Query: 194 -TDTDGVHLSFEGEQFLL-PQEAAH 216
+ GV L + Q L PQ AA+
Sbjct: 204 CSPVYGVTLQRDDRQITLSPQIAAY 228
>gi|150024191|ref|YP_001295017.1| Probable metal-dependent transcriptional regulator [Flavobacterium
psychrophilum JIP02/86]
gi|149770732|emb|CAL42196.1| Probable metal-dependent transcriptional regulator [Flavobacterium
psychrophilum JIP02/86]
Length = 217
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 59/110 (53%)
Query: 70 LTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNP 129
LTE+G A ++R+HRL E +L E + E H A + EH S++ ++ LGNP
Sbjct: 62 LTETGSLSAKMIVRKHRLWEVFLVEKLDFPWDEVHDIAEQLEHIKSEKLINKLDDFLGNP 121
Query: 130 LFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIE 179
DPHGDPIP G++ S+E EL + + ++D ++ + ++
Sbjct: 122 TEDPHGDPIPNANGQIISIEKQLLSELNEKQIGICVGVKDTSSEFLKYLD 171
>gi|88911292|sp|Q8FPG6|DTXR_COREF Diphtheria toxin repressor (Iron-dependent diphtheria tox
regulatory element) (Tox regulatory factor)
Length = 230
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 52/161 (32%), Positives = 81/161 (50%), Gaps = 8/161 (4%)
Query: 12 DVRRLSEDTLKAIYSLEEDGL-PVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDSHL 70
D+ +E L+ IY LEE+G+ P+ A L + Q + + + PD L
Sbjct: 3 DLVDTTEMYLRTIYELEEEGIVPLRARIAERLEQSGPTVSQTVARMERDGLVHVSPDRSL 62
Query: 71 --TESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
T GR A+ V+R+HRL E+ L++ G + + H +AC+ EH +SDE + R+ L +
Sbjct: 63 EMTPEGRALAIAVMRKHRLAERLLTDIIGLDIHKVHDEACRWEHVMSDEVERRLVEVLDD 122
Query: 129 PLFDPHGDPIP--TEEGEVQSVE---GVHADELPDDSYVRV 164
P G+PIP + G Q E G+ A +LP +RV
Sbjct: 123 VTRSPFGNPIPGLADIGLDQDREPDSGIRAIDLPHGESLRV 163
>gi|50955348|ref|YP_062636.1| iron-dependent repressor, DxtR metalloregulatory family [Leifsonia
xyli subsp. xyli str. CTCB07]
gi|50951830|gb|AAT89531.1| iron-dependent repressor, DxtR metalloregulatory family [Leifsonia
xyli subsp. xyli str. CTCB07]
Length = 233
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 42/131 (32%), Positives = 68/131 (51%), Gaps = 3/131 (2%)
Query: 12 DVRRLSEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCL-PPDSHL 70
D+ +E L+ I LEED + R++ G + + + G + D HL
Sbjct: 7 DLIDTTEMYLRTILELEEDNIVPLRARISERLGHSGPTVSQTVGRMERDGLVVVSGDRHL 66
Query: 71 --TESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
T GR+ A+ V+R+HRL E+ LS+ E H +AC+ EH +S++ + ++ LGN
Sbjct: 67 ELTGDGRRKAVHVMRKHRLAERLLSDVIELEWEYVHEEACRWEHVMSEQVERKLLTMLGN 126
Query: 129 PLFDPHGDPIP 139
P P+G+PIP
Sbjct: 127 PTESPYGNPIP 137
>gi|152967496|ref|YP_001363280.1| iron dependent repressor [Kineococcus radiotolerans SRS30216]
gi|151362013|gb|ABS05016.1| iron dependent repressor [Kineococcus radiotolerans SRS30216]
Length = 244
Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 13/136 (9%)
Query: 12 DVRRLSEDTLKAIYSLEEDGLPVNADRLAAL---TGLKISNQQYILD---LLHKQGYCLP 65
D+ +E LK ++ LEE+G+ R+A +G +S ++ LLH +
Sbjct: 20 DLIDTTEMYLKTVFELEEEGIVPMRARIAERLHHSGPTVSQTVARMERDGLLH-----VG 74
Query: 66 PDS--HLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIA 123
D LTE+G A++V+R+HRL E+ L++ G E S H +AC+ EH +S+E ++R+
Sbjct: 75 TDRRLELTEAGEAKAMRVMRKHRLTERLLTDVIGLEWSLVHEEACRWEHVVSEEVEKRLV 134
Query: 124 VRLGNPLFDPHGDPIP 139
L +P P+G+PIP
Sbjct: 135 AILDHPHSSPYGNPIP 150
>gi|25028368|ref|NP_738422.1| diptheria toxin repressor [Corynebacterium efficiens YS-314]
gi|23493653|dbj|BAC18622.1| diptheria toxin repressor [Corynebacterium efficiens YS-314]
Length = 241
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 52/161 (32%), Positives = 81/161 (50%), Gaps = 8/161 (4%)
Query: 12 DVRRLSEDTLKAIYSLEEDGL-PVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDSHL 70
D+ +E L+ IY LEE+G+ P+ A L + Q + + + PD L
Sbjct: 14 DLVDTTEMYLRTIYELEEEGIVPLRARIAERLEQSGPTVSQTVARMERDGLVHVSPDRSL 73
Query: 71 --TESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
T GR A+ V+R+HRL E+ L++ G + + H +AC+ EH +SDE + R+ L +
Sbjct: 74 EMTPEGRALAIAVMRKHRLAERLLTDIIGLDIHKVHDEACRWEHVMSDEVERRLVEVLDD 133
Query: 129 PLFDPHGDPIP--TEEGEVQSVE---GVHADELPDDSYVRV 164
P G+PIP + G Q E G+ A +LP +RV
Sbjct: 134 VTRSPFGNPIPGLADIGLDQDREPDSGIRAIDLPHGESLRV 174
>gi|78486484|ref|YP_392409.1| ABC-type Mn2+/Zn2+ transport systems permease components
[Thiomicrospira crunogena XCL-2]
gi|78364770|gb|ABB42735.1| ATP-binding cassette (ABC) superfamily transporter, permease
component [Thiomicrospira crunogena XCL-2]
Length = 466
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 54/170 (31%), Positives = 77/170 (45%), Gaps = 22/170 (12%)
Query: 3 LFSNLLFRFDVRR--LSEDTLKAIYSLEED--------------GLPVNADRLAALTGLK 46
L SNL + +RR E+ L+ Y L E GL + + + A G+
Sbjct: 295 LLSNLAQQRQLRRQVCEENILRTFYVLNERHPINQNTDQSEIDLGLAFSEEAILAARGMA 354
Query: 47 ISNQQYILDLLHKQGYC-LPPDS---HLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSE 102
I + L L ++G PD+ LTE G A+ + RRHRL E YL+E + +
Sbjct: 355 IGRLKKTLQRLEQKGLLNRAPDADGLSLTEMGMFAAVTLTRRHRLWESYLTEELDMDADK 414
Query: 103 WHTQACKEEHYLSDEEQERIAVRLGNP--LFDPHGDPIPTEEGEVQSVEG 150
H A + EH L+DEE ++ L L DPHG IP G + + EG
Sbjct: 415 VHHYAEQIEHLLTDEETVQLEQALAQQGRLQDPHGREIPEGHGTLANNEG 464
>gi|118048897|ref|ZP_01517456.1| iron dependent repressor [Chloroflexus aggregans DSM 9485]
gi|117994594|gb|EAV08876.1| iron dependent repressor [Chloroflexus aggregans DSM 9485]
Length = 237
Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 5/125 (4%)
Query: 21 LKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDSH----LTESGRK 76
L+ IY L PV A RLA ++ +I+ L ++G+ + ++H LT +G K
Sbjct: 29 LEVIYYLAARNEPVIAARLARWMKVQPPTVTHIVARLLEKGF-IERNAHGEITLTPTGLK 87
Query: 77 YALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDPHGD 136
A +++RRHR+LE++L + G H +A + EH LS +ERI +G+ PHG+
Sbjct: 88 LAEEMVRRHRILERFLVDVMGLPWHLIHEEAVRLEHALSPVMEERIMALVGHATTCPHGN 147
Query: 137 PIPTE 141
PIP +
Sbjct: 148 PIPGQ 152
>gi|83590254|ref|YP_430263.1| FeoA [Moorella thermoacetica ATCC 39073]
gi|83573168|gb|ABC19720.1| FeoA [Moorella thermoacetica ATCC 39073]
Length = 82
Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/81 (43%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 228 MIDLARKTVKLTTLRQGEEATIAGISKACRGANRRRLLDLGFVRGSRIAIDLTSPLGNPT 287
M+ R L+ L G + + RG RRRLLDLG V G+R+ + SP G+PT
Sbjct: 1 MVMAGRSITSLSNLEPGAFGEVVLLQ--ARGLARRRLLDLGLVPGTRVEVLRRSPGGDPT 58
Query: 288 AYVVRGTAIALRRDQARYILI 308
A+ VRGT IALRR++ R +L+
Sbjct: 59 AFWVRGTTIALRREEGRQVLV 79
>gi|117927400|ref|YP_871951.1| iron (metal) dependent repressor, DtxR family [Acidothermus
cellulolyticus 11B]
gi|117647863|gb|ABK51965.1| iron (metal) dependent repressor, DtxR family [Acidothermus
cellulolyticus 11B]
Length = 255
Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 3/125 (2%)
Query: 18 EDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYC-LPPDS--HLTESG 74
E L+ IY LEE+G+ R+A G + + + + G L D LT G
Sbjct: 18 EMYLRTIYELEEEGVVPLRARIAERLGQSVPTVSQTVARMERHGLVHLEGDRRLELTPQG 77
Query: 75 RKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDPH 134
R A +V+RRHRL E L + G + H +AC+ EH +S+E + R+ LG+P P+
Sbjct: 78 RAAATRVMRRHRLAECLLVDVIGLDWELVHEEACRWEHVMSEEVERRLLEILGHPTESPY 137
Query: 135 GDPIP 139
G+PIP
Sbjct: 138 GNPIP 142
>gi|11497861|ref|NP_069083.1| iron-dependent repressor (desR) [Archaeoglobus fulgidus DSM 4304]
gi|2650396|gb|AAB90988.1| iron-dependent repressor (desR) [Archaeoglobus fulgidus DSM 4304]
Length = 192
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 13/159 (8%)
Query: 70 LTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNP 129
LT+ GRK A K++R HRL E+ LS+ G++ E H ACK EH + DE +E I LG+P
Sbjct: 37 LTDKGRKKAEKIVRLHRLAERLLSDILGFKDVEEH--ACKFEHLIDDEAEEAICTLLGHP 94
Query: 130 LFDPHGDPIPT------EEGEVQSVEGVHADELP-DDSYVRVIHIEDEPADLYRQIETIG 182
PHG IP +E EV+ V ++ P D++ V+ +D R + + G
Sbjct: 95 QVCPHGRKIPQGHCCIEKETEVEKVIYRLSELSPGDEAEVKYTVADDRET---RMLISAG 151
Query: 183 FFRGAVFHLLRTDTDGVHLSFEGEQFLLPQEAAHNLTVM 221
G ++R V + E QF L ++ A + V+
Sbjct: 152 IIPGVGLKVIRVYPAFV-IQIENTQFALDKKLADAIYVV 189
>gi|89895357|ref|YP_518844.1| hypothetical protein DSY2611 [Desulfitobacterium hafniense Y51]
gi|89334805|dbj|BAE84400.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 82
Score = 65.1 bits (157), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 236 VKLTTLRQGEEATIAGISKACRGANRRRLLDLGFVRGSRIAIDLTSPLGNPTAYVVRGTA 295
V L+TL+QGE+A + + G RRR+LDLG V G+ + T+P G+P AY+VRGT
Sbjct: 7 VPLSTLKQGEKAYVVDLE--LNGLLRRRVLDLGIVPGTSLQCVGTAPAGDPIAYLVRGTV 64
Query: 296 IALRRDQARYILI 308
IALR + AR I +
Sbjct: 65 IALRSEDARSIRV 77
>gi|109645702|ref|ZP_01369622.1| FeoA [Desulfitobacterium hafniense DCB-2]
gi|109643651|gb|EAT53204.1| FeoA [Desulfitobacterium hafniense DCB-2]
Length = 82
Score = 65.1 bits (157), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 236 VKLTTLRQGEEATIAGISKACRGANRRRLLDLGFVRGSRIAIDLTSPLGNPTAYVVRGTA 295
V L+TL+QGE+A + + G RRR+LDLG V G+ + T+P G+P AY+VRGT
Sbjct: 7 VPLSTLKQGEKAYVVDLE--LNGLLRRRVLDLGIVPGTSLQCVGTAPAGDPIAYLVRGTV 64
Query: 296 IALRRDQARYILI 308
IALR + AR I +
Sbjct: 65 IALRSEDARSIRV 77
>gi|145295825|ref|YP_001138646.1| hypothetical protein cgR_1750 [Corynebacterium glutamicum R]
gi|140845745|dbj|BAF54744.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 228
Score = 64.7 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 52/154 (33%), Positives = 79/154 (51%), Gaps = 8/154 (5%)
Query: 12 DVRRLSEDTLKAIYSLEEDGL-PVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDSHL 70
D+ +E L+ IY LEE+G+ P+ A L + Q + + + PD L
Sbjct: 3 DLVDTTEMYLRTIYELEEEGIVPLRARIAERLEQSGPTVSQTVARMERDGLVHVSPDRSL 62
Query: 71 --TESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
T GR A+ V+R+HRL E+ L++ G + + H +AC+ EH +SDE + R+ L +
Sbjct: 63 EMTPEGRSLAIAVMRKHRLAERLLTDIIGLDIHKVHDEACRWEHVMSDEVERRLVEVLDD 122
Query: 129 PLFDPHGDPIP--TEEGEVQSVE---GVHADELP 157
P G+PIP E G Q+ E GV A +LP
Sbjct: 123 VQRSPFGNPIPGLGEIGLDQADEPDSGVRAIDLP 156
>gi|29830398|ref|NP_825032.1| iron dependent regulatory protein [Streptomyces avermitilis
MA-4680]
gi|29607509|dbj|BAC71567.1| putative iron dependent regulatory protein [Streptomyces
avermitilis MA-4680]
Length = 230
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 6/155 (3%)
Query: 17 SEDTLKAIYSLEEDGL-PVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDSHL--TES 73
+E L+ I LEE+G+ P+ A L + Q + + + D HL TE
Sbjct: 8 TEMYLRTILELEEEGVVPMRARIAERLDQSGPTVSQTVARMERDGLVAVASDRHLELTEE 67
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
GR+ A +V+R+HRL E L + G E + H +AC+ EH +S+ + R+ L +P P
Sbjct: 68 GRRLATRVMRKHRLAECLLVDVIGLEWEQVHAEACRWEHVMSEAVERRVLELLRHPTESP 127
Query: 134 HGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIE 168
+G+PIP E E+ +G AD D+ V + ++
Sbjct: 128 YGNPIPGLE-ELGEKDG--ADPFLDEGMVSLAELD 159
>gi|15673238|ref|NP_267412.1| metalloregulator [Lactococcus lactis subsp. lactis Il1403]
gi|12724229|gb|AAK05354.1|AE006357_9 metalloregulator [Lactococcus lactis subsp. lactis Il1403]
Length = 217
Score = 64.7 bits (156), Expect = 8e-09, Method: Composition-based stats.
Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 4/166 (2%)
Query: 18 EDTLKAIYSLE-EDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDSH---LTES 73
+D LKAIYSL+ E+ V+ + +A + + ++ L K+ + + LT+
Sbjct: 8 QDYLKAIYSLKNENNGSVSINAIAQKLSVSSPSATEMIKRLAKKELVIHKPYYGVSLTDL 67
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
G A +++ HR+ E +L E GY E H +A EH S E + V +G P DP
Sbjct: 68 GNHEARFILKSHRVWETFLFEKVGYTMEEVHDEAENLEHASSPRLIESLYVLMGYPATDP 127
Query: 134 HGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIE 179
HG IPTE +++ + DE + V IE+E + ++++E
Sbjct: 128 HGSEIPTESFWLKNEVELTLDEAQVEQTYHVTLIEEEGKNFFKKLE 173
>gi|19553124|ref|NP_601126.1| Mn-dependent transcriptional regulator [Corynebacterium glutamicum
ATCC 13032]
gi|62390760|ref|YP_226162.1| IRON DEPENDENT REGULATORY PROTEIN-DTXR HOMOLOG [Corynebacterium
glutamicum ATCC 13032]
gi|81847616|sp|Q8NP95|DTXR_CORGL Diphtheria toxin repressor (Iron-dependent diphtheria tox
regulatory element) (Tox regulatory factor)
gi|21324690|dbj|BAB99313.1| Mn-dependent transcriptional regulator [Corynebacterium glutamicum
ATCC 13032]
gi|41326098|emb|CAF20261.1| IRON DEPENDENT REGULATORY PROTEIN-DTXR HOMOLOG [Corynebacterium
glutamicum ATCC 13032]
Length = 228
Score = 64.3 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 52/154 (33%), Positives = 79/154 (51%), Gaps = 8/154 (5%)
Query: 12 DVRRLSEDTLKAIYSLEEDGL-PVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDSHL 70
D+ +E L+ IY LEE+G+ P+ A L + Q + + + PD L
Sbjct: 3 DLVDTTEMYLRTIYELEEEGIVPLRARIAERLEQSGPTVSQTVARMERDGLVHVSPDRSL 62
Query: 71 --TESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
T GR A+ V+R+HRL E+ L++ G + + H +AC+ EH +SDE + R+ L +
Sbjct: 63 EMTPEGRSLAIAVMRKHRLAERLLTDIIGLDIHKVHDEACRWEHVMSDEVERRLVEVLDD 122
Query: 129 PLFDPHGDPIP--TEEGEVQSVE---GVHADELP 157
P G+PIP E G Q+ E GV A +LP
Sbjct: 123 VHRSPFGNPIPGLGEIGLDQADEPDSGVRAIDLP 156
>gi|73668133|ref|YP_304148.1| iron dependent repressor [Methanosarcina barkeri str. Fusaro]
gi|72395295|gb|AAZ69568.1| iron dependent repressor [Methanosarcina barkeri str. Fusaro]
Length = 221
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 52/215 (24%), Positives = 99/215 (46%), Gaps = 6/215 (2%)
Query: 13 VRRLSEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQG---YCLPPDSH 69
+ R E +Y + ++ P +++ + + ++ LH G Y
Sbjct: 3 IDRFEEYLETILYLIRKNQGPAKTKQISEELNVSPPSVTEMIKKLHSSGLVEYTPYQGVE 62
Query: 70 LTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNP 129
LT+ G A+K+ R+H++LE +L + ++ E H +AC+ EH +SD E+I LG P
Sbjct: 63 LTKQGTDQAIKIKRKHQVLETFLVDVLDFDRKEAHKEACELEHAVSDAVLEKIYEFLGCP 122
Query: 130 LFDPHGDPIPTEEGE-VQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRGAV 188
+ P G+PI ++ VQ + V DE+ + S RV + P + ++ ++G G
Sbjct: 123 EYCPDGNPINIDKNNIVQEEKFVPLDEMEEGSSGRVARVT-LPRETKERLISLGILAGED 181
Query: 189 FHLLRTDTDG-VHLSFEGEQFLLPQEAAHNLTVMP 222
+ R G + + G + L ++ A + + P
Sbjct: 182 IKVRRKQKQGCISVIAVGSEIALGKDIAKKIFIAP 216
>gi|134104576|pdb|2ISY|A Chain A, Crystal Structure Of The Nickel-Activated Two-Domain Iron-
Dependent Regulator (Ider)
gi|134104577|pdb|2ISY|B Chain B, Crystal Structure Of The Nickel-Activated Two-Domain Iron-
Dependent Regulator (Ider)
Length = 157
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 3/126 (2%)
Query: 17 SEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYC-LPPDSHL--TES 73
+E L+ IY LEE+G+ R+A + + + G + D HL TE
Sbjct: 8 TEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGDRHLELTEK 67
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
GR A+ V+R+HRL E+ L + G E H +A + EH +S++ + R+ L NP P
Sbjct: 68 GRALAIAVMRKHRLAERLLVDVIGLPWEEVHAEAXRWEHVMSEDVERRLVKVLNNPTTSP 127
Query: 134 HGDPIP 139
G+PIP
Sbjct: 128 FGNPIP 133
>gi|88855702|ref|ZP_01130365.1| iron-dependent repressor, DxtR metalloregulatory family protein
[marine actinobacterium PHSC20C1]
gi|88815026|gb|EAR24885.1| iron-dependent repressor, DxtR metalloregulatory family protein
[marine actinobacterium PHSC20C1]
Length = 233
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 62/227 (27%), Positives = 104/227 (45%), Gaps = 19/227 (8%)
Query: 12 DVRRLSEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCL-PPDSHL 70
D+ +E L+ I LEE+ + R++ G + + + G + D HL
Sbjct: 3 DLVDTTEMYLRTILDLEEENIVPLRARISERLGHSGPTVSQTIGRMERDGLVVVEGDRHL 62
Query: 71 --TESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
TE GR+ A V+R+HRL E+ L++ G + + H +AC+ EH +S++ + ++ L +
Sbjct: 63 EFTEEGRRRATHVMRKHRLAERLLADVIGLDWALVHDEACRWEHVMSEQVERKLIEILDH 122
Query: 129 PLFDPHGDPIPTEE------------GEVQSVEGVHADELPDDSYVRVIH--IEDEPADL 174
P P+G+PIP E G V VE V P ++R + ++ EP +L
Sbjct: 123 PTESPYGNPIPGLEELGGIAAPLFSTGMVNIVELVAETTAPVSGHIRRLGEPVQFEP-EL 181
Query: 175 YRQIETIGFFRGAVFHLLRTDTD-GVHLSFEGEQFLLPQEAAHNLTV 220
+Q+ G G D+ V + GE LP E A ++ V
Sbjct: 182 LQQLFNAGVMPGRTAMFSAADSYVAVTVDGFGEGLELPNEVAVHIFV 228
>gi|68536174|ref|YP_250879.1| iron-dependent repressor DtxR [Corynebacterium jeikeium K411]
gi|88911293|sp|Q4JV96|DTXR_CORJK Diphtheria toxin repressor (Iron-dependent diphtheria tox
regulatory element) (Tox regulatory factor)
gi|68263773|emb|CAI37261.1| iron-dependent repressor DtxR [Corynebacterium jeikeium K411]
Length = 240
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 62/237 (26%), Positives = 108/237 (45%), Gaps = 31/237 (13%)
Query: 12 DVRRLSEDTLKAIYSLEEDGLPVNADRLAA---LTGLKISNQQYILDLLHKQGYCLPPDS 68
D+ +E L+ IY LEE+G+P R+A +G +S Q + + + + D
Sbjct: 3 DLVDTTEMYLRTIYELEEEGIPPLRARIAERLDQSGPTVS--QTVARMERDELLTVEKDR 60
Query: 69 --HLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRL 126
L+ GR A V+R+HRL E+ L++ G + H +AC+ EH + DE + ++ L
Sbjct: 61 SLKLSAQGRALATAVMRKHRLAERLLTDVIGLPWEKVHDEACRWEHVMGDEVEVQLVKVL 120
Query: 127 GNPLFDPHGDPIP-----------TEEGEVQS-------VEGVHADEL--PDDSYVRVIH 166
P G+PIP +E E+Q V A ++ P+ V+++
Sbjct: 121 SEYATSPFGNPIPGLDELMEGIPDSERAELQQKIDNLQVVTSQRASDIEPPEPIQVKILS 180
Query: 167 IED---EPADLYRQIETIGFFRGAVFHLLRTDTDGVHLSFEGEQFLLPQEAAHNLTV 220
I + L + +G G+V L+ T+ DG+ S + ++P+E H + V
Sbjct: 181 INEIIQVEHKLMAKFHALGMRPGSVVDLVATE-DGLEFSNDNGAMVVPEELGHAVRV 236
>gi|116669359|ref|YP_830292.1| iron (metal) dependent repressor, DtxR family [Arthrobacter sp.
FB24]
gi|116609468|gb|ABK02192.1| iron (metal) dependent repressor, DtxR family [Arthrobacter sp.
FB24]
Length = 231
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 42/131 (32%), Positives = 69/131 (52%), Gaps = 3/131 (2%)
Query: 12 DVRRLSEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCL-PPDSHL 70
D+ +E L+ I LEE+ + R+A + + + G + D HL
Sbjct: 3 DLIDTTEMYLRTILELEEENIVALRARIAERLRHSGPTVSQTIGRMERDGLVVVSGDRHL 62
Query: 71 --TESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
TE+GRK A +V+R+HRL E+ L++ G + + H +AC+ EH +S+ + RI L +
Sbjct: 63 ELTETGRKRATEVMRKHRLAERLLADVIGLDWAYVHDEACRWEHVMSERVERRIFELLDH 122
Query: 129 PLFDPHGDPIP 139
P P+G+PIP
Sbjct: 123 PTVSPYGNPIP 133
>gi|86739140|ref|YP_479540.1| iron dependent repressor [Frankia sp. CcI3]
gi|86566002|gb|ABD09811.1| iron dependent repressor [Frankia sp. CcI3]
Length = 254
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 43/129 (33%), Positives = 64/129 (49%), Gaps = 3/129 (2%)
Query: 17 SEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGY-CLPPDS--HLTES 73
+E L+ +Y L E+G+P RL + L +G CL D TE
Sbjct: 32 TEMYLRTLYELREEGIPPLRARLVERLHVSAPAASESTARLANEGLVCLADDRTVQFTEK 91
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
G A V+R+HRL E L++ G + + H +AC+ EH +SDE + R+ V LG+P P
Sbjct: 92 GLLRATAVMRKHRLAELLLTKVIGLDWALVHNEACRWEHVISDEVEARLTVLLGDPKRCP 151
Query: 134 HGDPIPTEE 142
G+ IP +
Sbjct: 152 FGNEIPPSQ 160
>gi|148273651|ref|YP_001223212.1| putative iron-dependent repressor [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147831581|emb|CAN02549.1| putative iron-dependent repressor [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 232
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 42/131 (32%), Positives = 68/131 (51%), Gaps = 3/131 (2%)
Query: 12 DVRRLSEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCL-PPDSHL 70
D+ +E L+ I LEE+ + R++ G + + + G + D HL
Sbjct: 3 DLVDTTEMYLRTILDLEEEAIVPLRARISERLGHSGPTVSQTVARMERDGLVIVSGDRHL 62
Query: 71 --TESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
T GR A+ V+R+HRL E+ LS+ G E H +AC+ EH +S++ + +I LG+
Sbjct: 63 ELTPEGRSKAVHVMRKHRLAERLLSDVIGLEWEFVHDEACRWEHVMSEQVERKILDLLGH 122
Query: 129 PLFDPHGDPIP 139
P P+G+PIP
Sbjct: 123 PTESPYGNPIP 133
>gi|28377808|ref|NP_784700.1| metal-dependent regulator [Lactobacillus plantarum WCFS1]
gi|28270641|emb|CAD63547.1| metal-dependent regulator [Lactobacillus plantarum WCFS1]
Length = 215
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 21/163 (12%)
Query: 70 LTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNP 129
LT+ G +YA ++R+HR+ E +L + Y+ + HT+A EH S+ + + LGNP
Sbjct: 61 LTKKGIRYAETLVRKHRIWEDFLVDKLDYDLPDVHTEAEVLEHVTSERLVDSLEAFLGNP 120
Query: 130 LFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRV----------IHIEDEPADLYRQIE 179
PHG IP ++G Q V + D + V + +++ D P + +Q+
Sbjct: 121 THCPHGGAIPDKDGHYQEDSHVSLADTQDGTTVTIERFIDNHDLLVYLHDTPLKIGQQVT 180
Query: 180 TIGF--FRGAVFHLLRTDTDGVHLSFEGEQFLLPQEAAHNLTV 220
+ F G V V + GE+ + +AAHN+ V
Sbjct: 181 VLKHDPFEGPV---------TVSIQKTGEEIPVSYKAAHNVFV 214
>gi|21222784|ref|NP_628563.1| iron repressor [Streptomyces coelicolor A3(2)]
gi|899417|emb|CAA90389.1| iron repressor [Streptomyces lividans]
gi|8894744|emb|CAB95905.1| iron repressor [Streptomyces coelicolor A3(2)]
gi|12666513|emb|CAC28070.1| DmdR1 protein [Streptomyces coelicolor A3(2)]
Length = 230
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 6/155 (3%)
Query: 17 SEDTLKAIYSLEEDGL-PVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDSHL--TES 73
+E L+ I LEE+G+ P+ A L + Q + + + D HL T+
Sbjct: 8 TEMYLRTILELEEEGVVPMRARIAERLDQSGPTVSQTVARMERDGLVSVAADRHLELTDE 67
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
GR+ A +V+R+HRL E L + G E + H +AC+ EH +S+ + R+ L +P P
Sbjct: 68 GRRLATRVMRKHRLAECLLVDVIGLEWEQVHAEACRWEHVMSEAVERRVLELLRHPTESP 127
Query: 134 HGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIE 168
+G+PIP E E+ +G AD D+ V + ++
Sbjct: 128 YGNPIPGLE-ELGETDG--ADPFLDEGMVSLADLD 159
>gi|15678242|ref|NP_275357.1| iron repressor [Methanothermobacter thermautotrophicus str. Delta
H]
gi|2621260|gb|AAB84720.1| iron repressor [Methanothermobacter thermautotrophicus str. Delta
H]
Length = 241
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 72/294 (24%), Positives = 115/294 (39%), Gaps = 71/294 (24%)
Query: 18 EDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYC-LPP--DSHLTESG 74
E+ L+ IY L + PV ++ + ++ +L L GY P + LT+ G
Sbjct: 12 EEYLETIYRLSDSRKPVTTTDISREMKIAPASVTQMLKKLDSNGYVKYSPYRGAVLTDRG 71
Query: 75 RKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDPH 134
+ A ++ R+HRLLE++L + G + H QAC+ EH LSD+ + + L P P
Sbjct: 72 YRIARRITRKHRLLERFLHDVLGIKRERIHRQACEMEHSLSDDAERALCHLLNMPGECPD 131
Query: 135 GDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRGAVFHLLRT 194
PIP E + Q+ E IE + AD IE IG
Sbjct: 132 EKPIPACEFKFQTCEEC---------------IEMKDAD----IEEIG------------ 160
Query: 195 DTDGVHLSFEGEQFLLPQEAAHNLTVMPCTDKGMIDLARKTVKLTTLRQGEEATIAGISK 254
C D+ + L T + + + ++ I
Sbjct: 161 ----------------------------CRDENLKSL-------TEMDENQSGRVSFIRG 185
Query: 255 ACRGANRRRLLDLGFVRGSRIAIDLTSPLGNPTAYVVRGTAIALRRDQARYILI 308
R R L+D+G G+ + + +PL P +RG+ +AL RD A + I
Sbjct: 186 DYRVVRR--LMDMGITIGAPLTMIKRAPLSGPIEVEIRGSRVALGRDIADNVFI 237
>gi|156740126|ref|YP_001430255.1| iron (metal) dependent repressor, DtxR family [Roseiflexus
castenholzii DSM 13941]
gi|156231454|gb|ABU56237.1| iron (metal) dependent repressor, DtxR family [Roseiflexus
castenholzii DSM 13941]
Length = 237
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 21 LKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPP---DSHLTESGRKY 77
L+ IY L G PV + RLA + ++ + +GY + + LT+ G +
Sbjct: 28 LEVIYYLAARGEPVISARLAEWMHVTPPTVADMVSRMEDRGYIVRDGRGEILLTDEGFRL 87
Query: 78 ALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDPHGDP 137
A ++RRHR+LE++L + G + E H +A + EH LS +ERI +G PHG+P
Sbjct: 88 AEAMVRRHRILERFLVDVMGMQWHEIHEEAVRLEHALSPRLEERIEELVGEATTCPHGNP 147
Query: 138 IP 139
IP
Sbjct: 148 IP 149
>gi|146304764|ref|YP_001192080.1| FeoA family protein [Metallosphaera sedula DSM 5348]
gi|145703014|gb|ABP96156.1| FeoA family protein [Metallosphaera sedula DSM 5348]
Length = 213
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 58/205 (28%), Positives = 88/205 (42%), Gaps = 6/205 (2%)
Query: 18 EDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDSH--LTESGR 75
E+ LK IY LEE L + LD L G+ LTE G+
Sbjct: 9 ENYLKEIYELEETKGHAKVVDLIDAFSISPGTISKALDRLESLGFIDRKSRRIKLTEDGK 68
Query: 76 KYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDPHG 135
+ A+++IR HRL E+ L++ G + H A + EH ++ ++I +G+P PHG
Sbjct: 69 RLAIRLIRSHRLSERLLTDIVGLDWIRAHELAHRLEHIWPEDVLDKIDEVVGHPKTCPHG 128
Query: 136 DPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRGAVFHLLRTD 195
PIP E VEGV E Y VI I E + R +++G G +L
Sbjct: 129 HPIPGRE---DRVEGVPLTETKPGEYT-VIMIVKEKEWILRMADSLGLLPGRNIVVLDNL 184
Query: 196 TDGVHLSFEGEQFLLPQEAAHNLTV 220
V + ++ +P+ A + V
Sbjct: 185 NGEVKVQINNKENKVPRSLAEQVIV 209
>gi|29375587|ref|NP_814741.1| iron-dependent repressor [Enterococcus faecalis V583]
gi|15425978|gb|AAK97638.1|AF409093_1 metalloregulatory protein EfaR [Enterococcus faecalis]
gi|29343048|gb|AAO80811.1| iron-dependent repressor [Enterococcus faecalis V583]
Length = 222
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 13/161 (8%)
Query: 18 EDTLKAIYSLEEDGLPVNADRLAALTGLKIS--------NQQYILDLLHKQGYCLPPDSH 69
ED LK I+ L D + VN ++ ++GL +S ++ DL+ Y
Sbjct: 6 EDYLKLIFELGGDEVKVNNKQI--VSGLDVSAASVSEMISKLVKEDLVEHSPY---QGVQ 60
Query: 70 LTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNP 129
LTE G K A +IR+HR+ E +L EH Y ++ H +A EH S R+A L +P
Sbjct: 61 LTEKGLKKASTLIRKHRIWEVFLVEHLNYTWNDVHEEAEVLEHVTSQTLVNRLADYLNHP 120
Query: 130 LFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDE 170
F PHG IP + + + + P + +R+ + DE
Sbjct: 121 EFCPHGGVIPEDNQPIHEEKRQTLTDYPVGTKIRIARVLDE 161
>gi|72160653|ref|YP_288310.1| iron dependent repressor [Thermobifida fusca YX]
gi|71914385|gb|AAZ54287.1| iron dependent repressor [Thermobifida fusca YX]
Length = 236
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 3/126 (2%)
Query: 17 SEDTLKAIYSLEEDGL-PVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDSHL--TES 73
+E L+ I+ LEE+G+ P+ A L + Q + + + D HL TE
Sbjct: 10 TEMYLRTIFELEEEGIVPLRARIAERLRQSGPTVSQTVARMERDGLVRVENDRHLVMTEE 69
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
GR+ A +V+R+HRL E+ L + G + H +AC+ EH +S+ +ER+ L P
Sbjct: 70 GRRLATQVMRKHRLAERLLVDIIGLPWEDVHVEACRWEHVISEAVEERLIGLLKEPWTCA 129
Query: 134 HGDPIP 139
HG+PIP
Sbjct: 130 HGNPIP 135
>gi|42526731|ref|NP_971829.1| iron-dependent transcriptional regulator [Treponema denticola ATCC
35405]
gi|41817046|gb|AAS11740.1| iron-dependent transcriptional regulator [Treponema denticola ATCC
35405]
Length = 222
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 43/128 (33%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 17 SEDTLKAIYSL--EEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDS---HLT 71
+E+ LKAI E D + LA L + + L K+ Y + LT
Sbjct: 8 TENYLKAIVKFLSESDKEKITTGELAKLLHVTPGTATSMAKKLEKEKYIEYQNRIGCRLT 67
Query: 72 ESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLF 131
E G+KY L ++RRHRL+E +L + + H +A EH SD ++I LG+P
Sbjct: 68 EKGKKYGLNILRRHRLIETFLFQTLKMDGKNIHNEAENLEHAASDLLIDKIDKYLGHPKR 127
Query: 132 DPHGDPIP 139
DPHG IP
Sbjct: 128 DPHGAMIP 135
>gi|94968894|ref|YP_590942.1| ABC transporter, ATPase subunit [Acidobacteria bacterium Ellin345]
gi|94550944|gb|ABF40868.1| ABC transporter, ATPase subunit [Acidobacteria bacterium Ellin345]
Length = 408
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 55 DLLHKQGYCLPPDS----HLTESGRKYALKVIRRHRLLEKYLSEHSGYE-PSEWHTQACK 109
D + +Q + LP D T+ GR+ A +IRRHRL E+ ++ + E QACK
Sbjct: 297 DAIRQQQHVLPEDGEFIVQFTQRGREMAESIIRRHRLAERLFTQSFQMQNQEEIEEQACK 356
Query: 110 EEHYLSDEEQERIAVRLGNPLFDPHGDPIP 139
EH LS E E+I L +P PHG PIP
Sbjct: 357 FEHILSPEATEKICTFLNHPRACPHGAPIP 386
>gi|76258459|ref|ZP_00766114.1| Iron dependent repressor:FeoA [Chloroflexus aurantiacus J-10-fl]
gi|76166543|gb|EAO60668.1| Iron dependent repressor:FeoA [Chloroflexus aurantiacus J-10-fl]
Length = 240
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 5/125 (4%)
Query: 21 LKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDSH----LTESGRK 76
L+ IY L PV A RLA ++ +I+ L ++G + ++H LT +G +
Sbjct: 29 LEVIYYLASRNEPVIAARLARWMKVQPPTVTHIVSRLLEKGL-IERNAHGEITLTATGFQ 87
Query: 77 YALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDPHGD 136
A ++RRHR+LE +L + G H +A + EH LS +ERI +G+ PHG+
Sbjct: 88 LAEAMVRRHRILEHFLVDVMGLPWHLIHEEAVRLEHTLSPVMEERIMALVGHATTCPHGN 147
Query: 137 PIPTE 141
PIP +
Sbjct: 148 PIPGQ 152
>gi|38233999|ref|NP_939766.1| diphtheria toxin repressor [Corynebacterium diphtheriae NCTC 13129]
gi|38605713|sp|P33120|DTXR_CORDI Diphtheria toxin repressor (Iron-dependent diphtheria tox
regulatory element) (Tox regulatory factor)
gi|38200261|emb|CAE49945.1| diphtheria toxin repressor [Corynebacterium diphtheriae]
Length = 226
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 3/131 (2%)
Query: 12 DVRRLSEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDS--- 68
D+ +E L+ IY LEE+G+ R+A + + + G +
Sbjct: 3 DLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSL 62
Query: 69 HLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
+T +GR A V+R+HRL E+ L++ G + ++ H +AC+ EH +SDE + R+ L +
Sbjct: 63 QMTPTGRTLATAVMRKHRLAERLLTDIIGLDINKVHDEACRWEHVMSDEVERRLVKVLKD 122
Query: 129 PLFDPHGDPIP 139
P G+PIP
Sbjct: 123 VSRSPFGNPIP 133
>gi|53794448|gb|AAU93781.1| diphtheria toxin repressor [Corynebacterium diphtheriae]
Length = 226
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 3/131 (2%)
Query: 12 DVRRLSEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDS--- 68
D+ +E L+ IY LEE+G+ R+A + + + G +
Sbjct: 3 DLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSL 62
Query: 69 HLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
+T +GR A V+R+HRL E+ L++ G + ++ H +AC+ EH +SDE + R+ L +
Sbjct: 63 QMTPTGRTLATAVMRKHRLAERLLTDIIGLDINKVHDEACRWEHVMSDEVERRLVKVLKD 122
Query: 129 PLFDPHGDPIP 139
P G+PIP
Sbjct: 123 VSRSPFGNPIP 133
>gi|84498530|ref|ZP_00997300.1| iron-dependent repressor, DxtR metalloregulatory family protein
[Janibacter sp. HTCC2649]
gi|84381273|gb|EAP97157.1| iron-dependent repressor, DxtR metalloregulatory family protein
[Janibacter sp. HTCC2649]
Length = 235
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 3/131 (2%)
Query: 12 DVRRLSEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGY-CLPPDSH- 69
D+ +E L+ ++ LEE+G+ R+A G + + + G + D H
Sbjct: 3 DLIDTTEMYLRTVFELEEEGITPLRARIAERLGHSGPTVSQTVARMERDGLLAVAGDRHI 62
Query: 70 -LTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
L+ GR+ A +V+R+HR+ E+ L + G E H +AC+ EH +SD + +I L +
Sbjct: 63 ELSTEGRRLATRVMRKHRIAERLLVDVIGLEWEYVHEEACRWEHVMSDRVEIKILAMLAD 122
Query: 129 PLFDPHGDPIP 139
P+G+PIP
Sbjct: 123 HAESPYGNPIP 133
>gi|144979|gb|AAA23301.1| diphtheria toxin repressor
Length = 226
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 42/131 (32%), Positives = 68/131 (51%), Gaps = 3/131 (2%)
Query: 12 DVRRLSEDTLKAIYSLEEDGL-PVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDSHL 70
D+ +E L+ IY LEE+G+ P+ A L + Q + + + D L
Sbjct: 3 DLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVAHMERDGLVVVASDRSL 62
Query: 71 --TESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
T +GR A V+R+HRL E+ L++ G + ++ H +AC+ EH +SDE + R+ L +
Sbjct: 63 QMTPTGRTLATAVMRKHRLAERLLTDIIGLDINKVHDEACRWEHVMSDEVERRLVKVLKD 122
Query: 129 PLFDPHGDPIP 139
P G+PIP
Sbjct: 123 VSRSPFGNPIP 133
>gi|1127152|pdb|1DPR|A Chain A, Diphtheria, Virulence, Dna-Binding, Iron-Regulation
Repressor Mol_id: 1; Molecule: Diphtheria Tox Repressor;
Chain: A, B; Synonym: Dtxr; Engineered: Yes
gi|1127153|pdb|1DPR|B Chain B, Diphtheria, Virulence, Dna-Binding, Iron-Regulation
Repressor Mol_id: 1; Molecule: Diphtheria Tox Repressor;
Chain: A, B; Synonym: Dtxr; Engineered: Yes
gi|2392674|pdb|2DTR| Chain , Structure Of Diphtheria Toxin Repressor
gi|5542115|pdb|1BI2|A Chain A, Structure Of Apo- And Holo-Diphtheria Toxin Repressor
gi|5542116|pdb|1BI2|B Chain B, Structure Of Apo- And Holo-Diphtheria Toxin Repressor
gi|144972|gb|AAA23296.1| toxin repressor protein (dtxR)
gi|144976|gb|AAA23299.1| diphtheria toxin repressor
Length = 226
Score = 61.2 bits (147), Expect = 9e-08, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 3/131 (2%)
Query: 12 DVRRLSEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDS--- 68
D+ +E L+ IY LEE+G+ R+A + + + G +
Sbjct: 3 DLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSL 62
Query: 69 HLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
+T +GR A V+R+HRL E+ L++ G + ++ H +AC+ EH +SDE + R+ L +
Sbjct: 63 QMTPTGRTLATAVMRKHRLAERLLTDIIGLDINKVHDEACRWEHVMSDEVERRLVKVLKD 122
Query: 129 PLFDPHGDPIP 139
P G+PIP
Sbjct: 123 VSRSPFGNPIP 133
>gi|53794452|gb|AAU93783.1| diphtheria toxin repressor [Corynebacterium diphtheriae]
Length = 226
Score = 61.2 bits (147), Expect = 9e-08, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 3/131 (2%)
Query: 12 DVRRLSEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDS--- 68
D+ +E L+ IY LEE+G+ R+A + + + G +
Sbjct: 3 DLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSL 62
Query: 69 HLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
+T +GR A V+R+HRL E+ L++ G + ++ H +AC+ EH +SDE + R+ L +
Sbjct: 63 QMTPTGRTLATAVMRKHRLAERLLTDIIGLDINKVHDEACRWEHVMSDEVERRLVKVLKD 122
Query: 129 PLFDPHGDPIP 139
P G+PIP
Sbjct: 123 VSRSPFGNPIP 133
>gi|9955138|pdb|1C0W|A Chain A, Crystal Structure Of The Cobalt-Activated Diphtheria Toxin
Repressor-Dna Complex Reveals A Metal Binding Sh-Like
Domain
gi|9955139|pdb|1C0W|B Chain B, Crystal Structure Of The Cobalt-Activated Diphtheria Toxin
Repressor-Dna Complex Reveals A Metal Binding Sh-Like
Domain
gi|9955140|pdb|1C0W|C Chain C, Crystal Structure Of The Cobalt-Activated Diphtheria Toxin
Repressor-Dna Complex Reveals A Metal Binding Sh-Like
Domain
gi|9955141|pdb|1C0W|D Chain D, Crystal Structure Of The Cobalt-Activated Diphtheria Toxin
Repressor-Dna Complex Reveals A Metal Binding Sh-Like
Domain
Length = 225
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 3/131 (2%)
Query: 12 DVRRLSEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDS--- 68
D+ +E L+ IY LEE+G+ R+A + + + G +
Sbjct: 2 DLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSL 61
Query: 69 HLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
+T +GR A V+R+HRL E+ L++ G + ++ H +AC+ EH +SDE + R+ L +
Sbjct: 62 QMTPTGRTLATAVMRKHRLAERLLTDIIGLDINKVHDEACRWEHVMSDEVERRLVKVLKD 121
Query: 129 PLFDPHGDPIP 139
P G+PIP
Sbjct: 122 VSRSPFGNPIP 132
>gi|90962452|ref|YP_536368.1| Iron-dependent repressor [Lactobacillus salivarius subsp.
salivarius UCC118]
gi|90821646|gb|ABE00285.1| Iron-dependent repressor [Lactobacillus salivarius subsp.
salivarius UCC118]
Length = 215
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 3/132 (2%)
Query: 18 EDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCL-PPDS--HLTESG 74
ED LK I+ L V+ ++A + + +++ L K+G P + LT+ G
Sbjct: 6 EDYLKIIFELGGTKKKVSNKQIAMSLNVAAGSVTEMVNKLVKEGLAAHTPYAGISLTDEG 65
Query: 75 RKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDPH 134
+ A K++RRHRL E +L E Y+ SE H +A EH SD+ +++ L +P PH
Sbjct: 66 IEVAEKLVRRHRLWETFLVEKLDYQLSEVHDEAEVLEHVASDKLMKKLDQFLNSPRECPH 125
Query: 135 GDPIPTEEGEVQ 146
G IPTE GE +
Sbjct: 126 GGVIPTEAGEYE 137
>gi|144981|gb|AAA23302.1| diphtheria toxin repressor
Length = 226
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 3/131 (2%)
Query: 12 DVRRLSEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDS--- 68
D+ +E L+ IY LEE+G+ R+A + + + G +
Sbjct: 3 DLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSL 62
Query: 69 HLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
+T +GR A V+R+HRL E+ L++ G + ++ H +AC+ EH +SDE + R+ L +
Sbjct: 63 QMTPTGRTLATAVMRKHRLAERLLTDIIGLDINKVHDEACRWEHVMSDEVERRLVKVLKD 122
Query: 129 PLFDPHGDPIP 139
P G+PIP
Sbjct: 123 VSRSPFGNPIP 133
>gi|53794450|gb|AAU93782.1| diphtheria toxin repressor [Corynebacterium diphtheriae]
Length = 226
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 3/131 (2%)
Query: 12 DVRRLSEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDS--- 68
D+ +E L+ IY LEE+G+ R+A + + + G +
Sbjct: 3 DLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSL 62
Query: 69 HLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
+T +GR A V+R+HRL E+ L++ G + ++ H +AC+ EH +SDE + R+ L +
Sbjct: 63 QMTPTGRTLATAVMRKHRLAERLLTDIIGLDINKVHDEACRWEHVMSDEVERRLVKVLKD 122
Query: 129 PLFDPHGDPIP 139
P G+PIP
Sbjct: 123 VSRSPFGNPIP 133
>gi|119961741|ref|YP_946806.1| putative iron-dependent repressor [Arthrobacter aurescens TC1]
gi|119948600|gb|ABM07511.1| putative iron-dependent repressor [Arthrobacter aurescens TC1]
Length = 231
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 3/135 (2%)
Query: 12 DVRRLSEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCL-PPDSHL 70
D+ +E L+ I LEE+ + R+A + + + G + D HL
Sbjct: 3 DLIDTTEMYLRTILELEEENIVALRARIAERLRHSGPTVSQTIGRMERDGLVIVSNDRHL 62
Query: 71 --TESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
TE GRK A +V+R+HRL E+ L++ G + + H +AC+ EH +S+ + R+ L +
Sbjct: 63 ELTEVGRKRATEVMRKHRLAERLLADVIGLDWAYVHDEACRWEHVMSERVERRLYELLEH 122
Query: 129 PLFDPHGDPIPTEEG 143
P P+G+PIP E
Sbjct: 123 PTESPYGNPIPGLEA 137
>gi|29375105|ref|NP_814258.1| ferrous iron transport protein A [Enterococcus faecalis V583]
gi|29342564|gb|AAO80329.1| ferrous iron transport protein A [Enterococcus faecalis V583]
Length = 157
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/75 (42%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 236 VKLTTLRQGEEATIAGISKACRGANRRRLLDLGFVRGSRIAIDLTSPLGNPTAYVVRGTA 295
V L TL+ GE ATI GI +GA +RRL+D+G +G+ I I +PL +P VRG
Sbjct: 81 VSLDTLKVGERATIVGIHG--QGAVKRRLMDMGLTKGTVIFIRKVAPLADPIEINVRGYE 138
Query: 296 IALRRDQARYILIYR 310
+ LR+ +A IL+ +
Sbjct: 139 LTLRKSEAELILVEK 153
>gi|148642278|ref|YP_001272791.1| iron dependent transcriptional regulator (Fe2+-binding)
[Methanobrevibacter smithii ATCC 35061]
gi|148551295|gb|ABQ86423.1| iron dependent transcriptional regulator (Fe2+-binding)
[Methanobrevibacter smithii ATCC 35061]
Length = 236
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 3/125 (2%)
Query: 18 EDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYC--LP-PDSHLTESG 74
E+ L+ +Y + ++ L+ G+ + +L L K Y +P + LT+ G
Sbjct: 11 EEYLEVLYRNGSNKEQISTTTLSKELGIAPGSVTQMLKKLEKLNYVNYVPYKGASLTDEG 70
Query: 75 RKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDPH 134
K A K+ R+HR+LEK+L E + H QACK EH LSDE + + L +P P
Sbjct: 71 MKIAQKITRKHRILEKFLIEVLNIKQENVHEQACKMEHTLSDEAERALCTMLHHPDLGPS 130
Query: 135 GDPIP 139
IP
Sbjct: 131 DGLIP 135
>gi|138894991|ref|YP_001125444.1| Ferrous iron transport protein A, putative [Geobacillus
thermodenitrificans NG80-2]
gi|134266504|gb|ABO66699.1| Ferrous iron transport protein A, putative [Geobacillus
thermodenitrificans NG80-2]
Length = 84
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/46 (60%), Positives = 35/46 (76%)
Query: 261 RRRLLDLGFVRGSRIAIDLTSPLGNPTAYVVRGTAIALRRDQARYI 306
RRRLLDLGFV G + + SPLG+PTAY V GT IALR++++ YI
Sbjct: 31 RRRLLDLGFVPGGEVEVGQRSPLGDPTAYYVCGTTIALRKEESNYI 76
>gi|608593|gb|AAA91345.1| diphtheria toxin repressor
Length = 228
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 51/154 (33%), Positives = 77/154 (50%), Gaps = 8/154 (5%)
Query: 12 DVRRLSEDTLKAIYSLEEDGL-PVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDSHL 70
D+ +E L+ IY LEE+G+ P+ A L + Q + + + PD L
Sbjct: 3 DLVDTTEMYLRTIYELEEEGIVPLRARIAERLEQSGPTVSQTVARMERDGLVHVSPDRSL 62
Query: 71 --TESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
T GR A+ V+R RL E+ L++ G + + H +AC+ EH +SDE + R+ L +
Sbjct: 63 EMTPEGRSLAIAVMRNDRLAERLLTDIIGLDIHKVHDEACRWEHVMSDEVERRLVEVLDD 122
Query: 129 PLFDPHGDPIP--TEEGEVQSVE---GVHADELP 157
P G+PIP E G Q+ E GV A +LP
Sbjct: 123 VHRSPFGNPIPGLGEIGLDQADEPDSGVRAIDLP 156
>gi|111220376|ref|YP_711170.1| Iron-dependent repressor [Frankia alni ACN14a]
gi|111147908|emb|CAJ59574.1| Iron-dependent repressor [Frankia alni ACN14a]
Length = 229
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 3/126 (2%)
Query: 17 SEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDS---HLTES 73
+E L+ +Y L E+G+P RL + + +G D TE
Sbjct: 8 TEMYLRTLYELREEGIPPLRARLVERLHVSAPAASESTARMANEGLVSLADDRTVQFTEK 67
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
G A V+R+HRL E L++ G + + H +AC+ EH +SDE + R+ V LG+P P
Sbjct: 68 GLLRATAVMRKHRLAELLLTKVIGLDWALVHNEACRWEHVISDEVEARLTVLLGDPKRCP 127
Query: 134 HGDPIP 139
G+ IP
Sbjct: 128 FGNEIP 133
>gi|116494321|ref|YP_806055.1| Mn-dependent transcriptional regulator [Lactobacillus casei ATCC
334]
gi|116104471|gb|ABJ69613.1| Mn-dependent transcriptional regulator [Lactobacillus casei ATCC
334]
Length = 214
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 9/132 (6%)
Query: 18 EDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQG------YCLPPDSHLT 71
ED LK I+ + D V+ R+ A G+ +S + ++++K G + LT
Sbjct: 6 EDYLKLIFEIGGDTQLVSNKRIVA--GMHVSAAS-VSEMINKLGEEKLVAHTPYQGIQLT 62
Query: 72 ESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLF 131
+GRK A ++R HRL E +L + Y H +A K EH L+ E +R++ LG P +
Sbjct: 63 SAGRKKAAILVRNHRLWEVFLVQCLKYPADAVHQEAEKLEHALTPEMAKRLSAMLGEPRY 122
Query: 132 DPHGDPIPTEEG 143
PHG IP G
Sbjct: 123 CPHGGVIPDANG 134
>gi|82523899|emb|CAI78622.1| putative ferrous iron transport protein [uncultured delta
proteobacterium]
Length = 77
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 50/71 (70%), Gaps = 2/71 (2%)
Query: 236 VKLTTLRQGEEATIAGISKACRGANRRRLLDLGFVRGSRIAIDLTSPLGNPTAYVVRGTA 295
+KL+ L++GE+A I + +G+ R+RLL++GF++GS I I+ +PL +P +++G
Sbjct: 4 LKLSELKEGEKAVITKVGG--KGSFRKRLLEMGFIKGSEIFIEKYAPLRDPMELIIKGYH 61
Query: 296 IALRRDQARYI 306
++LR ++A YI
Sbjct: 62 VSLRVEEASYI 72
>gi|70727261|ref|YP_254177.1| hypothetical protein SH2262 [Staphylococcus haemolyticus JCSC1435]
gi|68447987|dbj|BAE05571.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 215
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/128 (35%), Positives = 63/128 (49%), Gaps = 3/128 (2%)
Query: 18 EDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPD---SHLTESG 74
ED LKAI + E D V+ +L+ +K + ++ L K GY L++ G
Sbjct: 7 EDYLKAILANEGDTSFVSNKKLSQYLNIKPPSVSEMVGRLEKAGYVETKHYKGVKLSDEG 66
Query: 75 RKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDPH 134
K+ L +I+RHRLLE +L E Y E H +A EH +SD ER+ L P PH
Sbjct: 67 LKHTLDIIKRHRLLELFLIEVLQYNWEEVHQEAEILEHRISDLFVERLDKILDYPETCPH 126
Query: 135 GDPIPTEE 142
G IP +
Sbjct: 127 GGIIPRNQ 134
>gi|119715026|ref|YP_921991.1| iron dependent repressor [Nocardioides sp. JS614]
gi|119535687|gb|ABL80304.1| iron dependent repressor [Nocardioides sp. JS614]
Length = 228
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 3/131 (2%)
Query: 12 DVRRLSEDTLKAIYSLEEDGL-PVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDSHL 70
D+ +E L+ IY L E+G+ P+ A L + Q + + + D HL
Sbjct: 3 DLIDTTEMYLRTIYELVEEGIVPLRARIAERLHQSGPTVSQTVARMERDGLLTVEGDRHL 62
Query: 71 --TESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
TE G + A +V+R+HRL E+ L++ G + H +AC+ EH +S+ + R+ L +
Sbjct: 63 QLTEEGLRLATRVMRKHRLAERLLTDVIGLDWELVHEEACRWEHVMSETVERRLLRLLDH 122
Query: 129 PLFDPHGDPIP 139
P P+G+PIP
Sbjct: 123 PTESPYGNPIP 133
>gi|125624050|ref|YP_001032533.1| transcriptional regulator [Lactococcus lactis subsp. cremoris
MG1363]
gi|124492858|emb|CAL97815.1| transcriptional regulator [Lactococcus lactis subsp. cremoris
MG1363]
Length = 217
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 4/166 (2%)
Query: 18 EDTLKAIYSLE-EDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDSH---LTES 73
+D LKAIYSL E+ V+ + +A + + ++ L K+ + + LT+
Sbjct: 8 QDYLKAIYSLRNENNESVSINAIAQKLSVSSPSATEMIKRLAKKELVIHKPYYGVLLTDL 67
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
G A +++ HR+ E +L E GY E H +A EH S E + V +G P DP
Sbjct: 68 GTHEARFILKSHRVWESFLFEKVGYTMEEVHDEAENLEHASSPRLIESLYVLMGYPETDP 127
Query: 134 HGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIE 179
HG IPTE +++ + DE V IE++ + ++E
Sbjct: 128 HGSEIPTESFWLKNEVELTLDEAQVAQTYHVTAIEEKGKAFFEKLE 173
>gi|50841968|ref|YP_055195.1| repressor [Propionibacterium acnes KPA171202]
gi|50839570|gb|AAT82237.1| repressor [Propionibacterium acnes KPA171202]
Length = 232
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 43/74 (58%)
Query: 70 LTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNP 129
LT+ G A V+R+HRL E L++ G P H +AC+ EH +S E ++R+ L NP
Sbjct: 65 LTQEGHDVAQTVMRKHRLAECLLTQIIGLRPDLVHDEACRWEHVISGEVEKRLTGLLENP 124
Query: 130 LFDPHGDPIPTEEG 143
P+G P+P E+
Sbjct: 125 DVSPYGCPLPPEQA 138
>gi|68229864|ref|ZP_00569054.1| Iron dependent repressor [Frankia sp. EAN1pec]
gi|68202452|gb|EAN16634.1| Iron dependent repressor [Frankia sp. EAN1pec]
Length = 246
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 41/128 (32%), Positives = 66/128 (51%), Gaps = 3/128 (2%)
Query: 17 SEDTLKAIYSLEEDGL-PVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDS--HLTES 73
+E L+ +Y L E+G+ P+ A + L + + L ++ L D TE
Sbjct: 27 TEMYLRTLYELREEGITPLRARLVERLHVSAPAASESTARLANEGLVALADDRTVQFTEK 86
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
G A V+R+HRL E L++ G + + H +AC+ EH +SDE + R+ V LG+P P
Sbjct: 87 GLVRATAVMRKHRLAELLLTKVIGLDWALVHNEACRWEHVISDEVEARLTVLLGDPKRCP 146
Query: 134 HGDPIPTE 141
G+ IP +
Sbjct: 147 FGNEIPAQ 154
>gi|46445892|ref|YP_007257.1| putative ABC transporter permease ytgC [Candidatus Protochlamydia
amoebophila UWE25]
gi|46399533|emb|CAF22982.1| putative ABC transporter permease ytgC [Candidatus Protochlamydia
amoebophila UWE25]
Length = 450
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 18 EDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQG------YCLPPDSHLT 71
E+ LK I+ L D + R L + S+ Y++ +LH+ + LT
Sbjct: 319 ENLLKTIWRLSPDIVV----RFDQLIKYQPSSPLYLIFVLHRMKHNGWIQFNRDNTYQLT 374
Query: 72 ESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLF 131
+ G+ A K+IR HRL E YL E+ G H A + EH L+ E ++ + L +P
Sbjct: 375 QDGQLRAAKIIRLHRLWEVYLVEYLGARTERVHHNAEEMEHILTPELEKELTELLHDPKH 434
Query: 132 DPHGDPIPTEEG 143
DPH PIP++EG
Sbjct: 435 DPHRQPIPSKEG 446
>gi|15834960|ref|NP_296719.1| ABC transporter, permease protein, putative [Chlamydia muridarum
Nigg]
gi|14195339|sp|Q9PKX0|Y341_CHLMU Probable metal transport system membrane protein TC_0341
gi|8163205|gb|AAF73548.1| ABC transporter, permease protein, putative [Chlamydia muridarum
Nigg]
Length = 447
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 42/82 (51%)
Query: 63 CLPPDSHLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERI 122
C LT+ G A K++R HRL E YL + S+ H A + EH L+DE +
Sbjct: 366 CFDHQXFLTDKGEAKAAKLVRAHRLWESYLVSELDFNKSKVHNFAEEMEHVLTDELDTTL 425
Query: 123 AVRLGNPLFDPHGDPIPTEEGE 144
+ L NP +DPH IP +G+
Sbjct: 426 SKMLQNPDYDPHKREIPKLKGK 447
>gi|116512096|ref|YP_809312.1| Mn-dependent transcriptional regulator [Lactococcus lactis subsp.
cremoris SK11]
gi|116107750|gb|ABJ72890.1| Mn-dependent transcriptional regulator [Lactococcus lactis subsp.
cremoris SK11]
Length = 217
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 4/166 (2%)
Query: 18 EDTLKAIYSLE-EDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDSH---LTES 73
+D LKAIYSL E+ V+ + +A + + ++ L K+ + + LT+
Sbjct: 8 QDYLKAIYSLRNENNESVSINAIAQKLSVSSPSATEMIKRLAKKELVIHKPYYGVLLTDL 67
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
G A +++ HR+ E +L E GY E H +A EH S E + V +G P DP
Sbjct: 68 GIHEARFILKSHRVWESFLFEKVGYTMEEVHDEAENLEHASSPRLIESLYVLMGYPETDP 127
Query: 134 HGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIE 179
HG IPTE +++ + DE V IE++ + ++E
Sbjct: 128 HGSEIPTESFWLKNEVELTLDEAQVAQTYHVTAIEEKGKAFFEKLE 173
>gi|16975074|pdb|1G3Y|A Chain A, Arg80ala Dtxr
Length = 226
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 3/131 (2%)
Query: 12 DVRRLSEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDS--- 68
D+ +E L+ IY LEE+G+ R+A + + + G +
Sbjct: 3 DLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSL 62
Query: 69 HLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
+T +GR A V+R+H L E+ L++ G + ++ H +AC+ EH +SDE + R+ L +
Sbjct: 63 QMTPTGRTLATAVMRKHALAERLLTDIIGLDINKVHDEACRWEHVMSDEVERRLVKVLKD 122
Query: 129 PLFDPHGDPIP 139
P G+PIP
Sbjct: 123 VSRSPFGNPIP 133
>gi|91201944|emb|CAJ75004.1| conserved hypothetical protein [Candidatus Kuenenia
stuttgartiensis]
Length = 218
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 36/88 (40%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 54 LDLLHKQGYCLPPDSH--LTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEE 111
L L GY L D+ LTE G+ A +IRRHRL E+ L + + + AC E
Sbjct: 43 LKTLVNNGYILLKDNKVILTEKGQVEAKLIIRRHRLAERLLHDVLEVKEEAMDSSACDFE 102
Query: 112 HYLSDEEQERIAVRLGNPLFDPHGDPIP 139
H+LS+E I LG+PL PHG IP
Sbjct: 103 HFLSEEVTTSICTLLGHPLTCPHGKNIP 130
>gi|15897577|ref|NP_342182.1| Iron-dependent repressor [Sulfolobus solfataricus P2]
gi|6015807|emb|CAB57634.1| diphtheria toxin repressor [Sulfolobus solfataricus]
gi|13813836|gb|AAK40972.1| Iron-dependent repressor [Sulfolobus solfataricus P2]
Length = 212
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 50/181 (27%), Positives = 78/181 (43%), Gaps = 7/181 (3%)
Query: 18 EDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDSH---LTESG 74
E+ LK +Y +EE L ++ + L+ L K G + LTE G
Sbjct: 9 ENYLKEMYEIEEIKGSAKVSELISIFNISPGTISKALNKLEKLGLVERTNDRKIKLTEEG 68
Query: 75 RKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDPH 134
++ A ++I+ HRL E+ L++ G + H A + EH D+ ERI LG P PH
Sbjct: 69 KRIAERLIKSHRLSERLLTDIVGVDWIRAHELAHRLEHIWPDDILERIDRLLGYPTTCPH 128
Query: 135 GDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRGAVFHLLRT 194
G PI G V G E+ +V+ I E + R+ +G G V ++
Sbjct: 129 GHPI----GNRIKVSGKKLSEINIAGKYKVVMIVREEEWILREATRLGLKPGVVLEVIEN 184
Query: 195 D 195
+
Sbjct: 185 N 185
>gi|21222420|ref|NP_628199.1| iron dependent repressor [Streptomyces coelicolor A3(2)]
gi|12666515|emb|CAC28071.1| DmdR2 protein [Streptomyces coelicolor A3(2)]
gi|13122181|emb|CAC32357.1| iron dependent repressor [Streptomyces coelicolor A3(2)]
Length = 238
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 3/129 (2%)
Query: 17 SEDTLKAIYSLEEDGL-PVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDSHL--TES 73
+E L+ + LEE+G+ P+ A L + Q + + + D HL T++
Sbjct: 8 TEMYLRTVLELEEEGVVPLRARIAEHLDQSGPTVSQTVARMERDGLLRIAADRHLELTDT 67
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
GR+ A +V+R+HRL E L + G E + H +AC+ EH +S+ + R+ L +P P
Sbjct: 68 GRRLATRVMRKHRLAECLLVDVIGLEWEQVHAEACRWEHVMSEAVERRLLRLLRHPTESP 127
Query: 134 HGDPIPTEE 142
+G+PIP E
Sbjct: 128 YGNPIPGLE 136
>gi|152974428|ref|YP_001373945.1| FeoA family protein [Bacillus cereus subsp. cytotoxis NVH 391-98]
gi|152023180|gb|ABS20950.1| FeoA family protein [Bacillus cereus subsp. cytotoxis NVH 391-98]
Length = 85
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 231 LARKTVKLTTLRQGEEATIAGISKACRGANRRRLLDLGFVRGSRIAIDLTSPLGNPTAYV 290
++ T L++ R GE I I G +RRLLDLGF+ G+ I + SPLG+P AY
Sbjct: 2 VSANTKPLSSFRTGEFVQIERIQ--LEGTMKRRLLDLGFIPGATIKVLQKSPLGDPVAYQ 59
Query: 291 VRGTAIALRRDQARYIL 307
V T IALR +++ I
Sbjct: 60 VSNTTIALRSEESSLIF 76
>gi|84489257|ref|YP_447489.1| predicted metal-dependent transcriptional regulator [Methanosphaera
stadtmanae DSM 3091]
gi|84372576|gb|ABC56846.1| predicted metal-dependent transcriptional regulator [Methanosphaera
stadtmanae DSM 3091]
Length = 238
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 7/95 (7%)
Query: 69 HLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
LT+ G K A+ ++R+HRL+E +L + G + + H QAC EH LSDE + +I LG
Sbjct: 65 QLTDKGFKVAISIVRKHRLIETFLYKTLGLDMEDLHEQACAMEHTLSDEAERKICQLLGY 124
Query: 129 P--LFDPHGDPIPTEEGEVQS---VEGVHA-DELP 157
P D H + IP + +Q+ +H+ DE+P
Sbjct: 125 PDQCPDDH-NIIPACDLNIQTCYECSKIHSIDEIP 158
>gi|89898375|ref|YP_515485.1| ABC transporter of metals [Chlamydophila felis Fe/C-56]
gi|89331747|dbj|BAE81340.1| ABC transporter of metals [Chlamydophila felis Fe/C-56]
Length = 449
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 46/148 (31%), Positives = 69/148 (46%), Gaps = 10/148 (6%)
Query: 10 RFDVRRLSEDTLKAIYSLEEDGLP-------VNADRLAALTGLKISNQQYILDLLHKQGY 62
RF + E LK + L ED L V + + G K ++ L LL +QG+
Sbjct: 303 RFSFSKNQEHLLKVFWYLLEDQLFEVGARDFVCSRKYQEYFGPK-PFPRFRLWLLERQGF 361
Query: 63 CLPPDS--HLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQE 120
+ L+E G+ A K++R HRL E YL ++ + H+ A + EH L+DE
Sbjct: 362 LKHRNYLWSLSEKGKTKAKKLVRAHRLWECYLVRSLEFKEEDVHSFAEEMEHVLTDELDH 421
Query: 121 RIAVRLGNPLFDPHGDPIPTEEGEVQSV 148
I L NP +DPH IP E + + +
Sbjct: 422 AITEMLDNPDYDPHDKLIPETENKKEEL 449
>gi|56420019|ref|YP_147337.1| ferrous iron uptake system protein A [Geobacillus kaustophilus
HTA426]
gi|56379861|dbj|BAD75769.1| ferrous iron uptake system protein A [Geobacillus kaustophilus
HTA426]
Length = 84
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/46 (58%), Positives = 35/46 (76%)
Query: 261 RRRLLDLGFVRGSRIAIDLTSPLGNPTAYVVRGTAIALRRDQARYI 306
+RRLLDLGFV G + + SPLG+PTAY V GT IALR++++ YI
Sbjct: 31 KRRLLDLGFVPGGEVKVGQRSPLGDPTAYRVCGTTIALRKEESDYI 76
>gi|16118833|gb|AAL14619.1|AF417113_4 putative iron dependent repressor [Enterococcus mundtii]
Length = 215
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 3/156 (1%)
Query: 18 EDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQG---YCLPPDSHLTESG 74
ED LK I L D VN ++ + + ++ ++ L K+ + LT+SG
Sbjct: 6 EDYLKIILELGGDTTKVNNKQIVSSLAVSPASVSEMISKLVKEKLVEHSPYQGVQLTDSG 65
Query: 75 RKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDPH 134
A +IR+HRL E +L EH Y +E H A EH S++ + + L +P PH
Sbjct: 66 LIKASSLIRKHRLWEVFLVEHLDYNWNEVHDDAEVLEHVTSEQLADHLESYLNHPKHCPH 125
Query: 135 GDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDE 170
G IP +E V + P + +R+ + DE
Sbjct: 126 GGIIPKKEQVVHEERRQTLESYPVGTKIRIARVLDE 161
>gi|156858480|gb|EDO51911.1| hypothetical protein BACUNI_04461 [Bacteroides uniformis ATCC 8492]
Length = 844
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 232 ARKTVKLTTLRQGEEATIAGISKACRGANRRRLLDLGFVRGSRIAIDLTSPLGNPTAYVV 291
RKT++L+ L GE+ I + G R+R++++GF++G + + L +PL +P Y V
Sbjct: 18 GRKTMRLSELNTGEKGVIVKVLG--HGGFRKRIVEMGFIKGKTVEVLLNAPLRDPIKYKV 75
Query: 292 RGTAIALRRDQARYILI 308
G I+LRR +A I I
Sbjct: 76 MGYEISLRRQEAEMIEI 92
>gi|86157991|ref|YP_464776.1| Iron (metal) dependent repressor [Anaeromyxobacter dehalogenans
2CP-C]
gi|85774502|gb|ABC81339.1| Iron (metal) dependent repressor [Anaeromyxobacter dehalogenans
2CP-C]
Length = 225
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 33/73 (45%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 70 LTESGRKYALKVIRRHRLLEKYLSE--HSGYEPSEWHTQACKEEHYLSDEEQERIAVRLG 127
LTE G + A V+RRHRL E+ + G EP E QAC+ EH LS E + + LG
Sbjct: 65 LTEEGERQARDVVRRHRLTERLFRDLLDLGEEPME--KQACEFEHILSPEATDSVCTLLG 122
Query: 128 NPLFDPHGDPIPT 140
+P PHG PIP+
Sbjct: 123 HPPTCPHGKPIPS 135
>gi|49258436|pdb|1P92|A Chain A, Crystal Structure Of (H79a)dtxr
Length = 226
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 3/131 (2%)
Query: 12 DVRRLSEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDS--- 68
D+ +E L+ IY LEE+G+ R+A + + + G +
Sbjct: 3 DLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSL 62
Query: 69 HLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
+T +GR A V+R+ RL E+ L++ G + ++ H +AC+ EH +SDE + R+ L +
Sbjct: 63 QMTPTGRTLATAVMRKARLAERLLTDIIGLDINKVHDEACRWEHVMSDEVERRLVKVLKD 122
Query: 129 PLFDPHGDPIP 139
P G+PIP
Sbjct: 123 VSRSPFGNPIP 133
>gi|15922357|ref|NP_378026.1| hypothetical diphtheria toxin repressor [Sulfolobus tokodaii str.
7]
gi|15623146|dbj|BAB67135.1| 211aa long hypothetical diphtheria toxin repressor [Sulfolobus
tokodaii str. 7]
Length = 211
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 3/151 (1%)
Query: 70 LTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNP 129
LT G+K A K+IR HRL E+ L++ G + H A + EH ++ ++I LG P
Sbjct: 62 LTAEGKKIAEKLIRAHRLSERLLTDIIGLDWIRAHQLAHRLEHIWPEDVVDKIDELLGKP 121
Query: 130 LFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRGAVF 189
L PHG PIP E +V G+ E + +VI I E + + + G
Sbjct: 122 LTCPHGHPIPGREVKVN---GIKLSEAECNKKYKVIMIIREEEWILSMADELNIKPGVEI 178
Query: 190 HLLRTDTDGVHLSFEGEQFLLPQEAAHNLTV 220
L++ + + + + ++ +P+ A + V
Sbjct: 179 KLIKKNENDFVIEIDNKKESIPKALAEEVLV 209
>gi|69244702|ref|ZP_00602966.1| Iron dependent repressor:FeoA [Enterococcus faecium DO]
gi|68196293|gb|EAN10722.1| Iron dependent repressor:FeoA [Enterococcus faecium DO]
Length = 215
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 49/156 (31%), Positives = 71/156 (45%), Gaps = 3/156 (1%)
Query: 18 EDTLKAIYSLEEDGLPVNADRL-AALTGLKISNQQYILDLLHKQGYCLPP--DSHLTESG 74
ED LK I L D VN ++ ++L S + I L+ ++ P LT SG
Sbjct: 6 EDYLKIILELGGDTTKVNNKQIVSSLDVSAASVSEMISKLVKEELVEHSPYQGVQLTASG 65
Query: 75 RKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDPH 134
+ A +IR+HRL E +L EH Y +E H A EH S+ + + L +P PH
Sbjct: 66 LQKASSLIRKHRLWEVFLVEHLDYSWNEVHDDAEVLEHVTSEHLADHLENYLNHPEHCPH 125
Query: 135 GDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDE 170
G IP +E V + P + VR+ + DE
Sbjct: 126 GGSIPKKEEVVHEERRQTLESYPVGTKVRIARVLDE 161
>gi|16975069|pdb|1G3S|A Chain A, Cys102ser Dtxr
gi|16975070|pdb|1G3T|A Chain A, Cys102ser Dtxr
gi|16975071|pdb|1G3T|B Chain B, Cys102ser Dtxr
gi|16975073|pdb|1G3W|A Chain A, Cd-Cys102ser Dtxr
Length = 226
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 3/131 (2%)
Query: 12 DVRRLSEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDS--- 68
D+ +E L+ IY LEE+G+ R+A + + + G +
Sbjct: 3 DLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSL 62
Query: 69 HLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
+T +GR A V+R+HRL E+ L++ G + ++ H +A + EH +SDE + R+ L +
Sbjct: 63 QMTPTGRTLATAVMRKHRLAERLLTDIIGLDINKVHDEASRWEHVMSDEVERRLVKVLKD 122
Query: 129 PLFDPHGDPIP 139
P G+PIP
Sbjct: 123 VSRSPFGNPIP 133
>gi|156867185|gb|EDO60557.1| hypothetical protein CLOLEP_02153 [Clostridium leptum DSM 753]
Length = 80
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 229 IDLARKTVKLTTLRQGEEATIAGISKACRGANRRRLLDLGFVRGSRIAIDLTSPLGNPTA 288
+D + + L L GE + + G RRR+LDLG V G+ + SP G+PTA
Sbjct: 1 MDFLDQYIPLNLLPIGETGIVQKLLST--GTQRRRMLDLGLVNGTPVEALQKSPSGDPTA 58
Query: 289 YVVRGTAIALRRDQARYILIYR 310
Y +RG IALR + A IL+ R
Sbjct: 59 YFIRGAVIALRSEDAGKILVER 80
>gi|30260862|ref|NP_843239.1| ferrous iron transport protein A, putative [Bacillus anthracis str.
Ames]
gi|47525996|ref|YP_017345.1| ferrous iron transport protein a, putative [Bacillus anthracis str.
'Ames Ancestor']
gi|49183705|ref|YP_026957.1| ferrous iron transport protein A, putative [Bacillus anthracis str.
Sterne]
gi|49480272|ref|YP_034970.1| ferrous iron transport protein A [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|65318141|ref|ZP_00391100.1| COG1918: Fe2+ transport system protein A [Bacillus anthracis str.
A2012]
gi|118476390|ref|YP_893541.1| ferrous iron transport protein A [Bacillus thuringiensis str. Al
Hakam]
gi|30254311|gb|AAP24725.1| ferrous iron transport protein A, putative [Bacillus anthracis str.
Ames]
gi|47501144|gb|AAT29820.1| ferrous iron transport protein A, putative [Bacillus anthracis str.
'Ames Ancestor']
gi|49177632|gb|AAT53008.1| ferrous iron transport protein A, putative [Bacillus anthracis str.
Sterne]
gi|49331828|gb|AAT62474.1| ferrous iron transport protein A [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|118415615|gb|ABK84034.1| ferrous iron transport protein A [Bacillus thuringiensis str. Al
Hakam]
Length = 85
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 231 LARKTVKLTTLRQGEEATIAGISKACRGANRRRLLDLGFVRGSRIAIDLTSPLGNPTAYV 290
++ T L+ + GE I I G +RRLLDLGF+ G+ I + SPLG+P AY
Sbjct: 2 VSANTKPLSEFKTGEFVQIEKIQ--LEGTMKRRLLDLGFIPGATIKVLQRSPLGDPVAYQ 59
Query: 291 VRGTAIALRRDQARYIL 307
V T IALR++++ I
Sbjct: 60 VSNTTIALRKEESSLIF 76
>gi|75761689|ref|ZP_00741634.1| Ferrous iron transport protein A [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74490820|gb|EAO54091.1| Ferrous iron transport protein A [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 85
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 231 LARKTVKLTTLRQGEEATIAGISKACRGANRRRLLDLGFVRGSRIAIDLTSPLGNPTAYV 290
++ T L+ + GE I I G +RRLLDLGF+ G+ I + SPLG+P AY
Sbjct: 2 VSANTKPLSDFKTGEFVQIEKIQ--LEGTMKRRLLDLGFIPGATIKVLQRSPLGDPVAYQ 59
Query: 291 VRGTAIALRRDQARYIL 307
V T IALR++++ I
Sbjct: 60 VSNTTIALRKEESSLIF 76
>gi|149370062|ref|ZP_01889913.1| Mn-dependent transcriptional regulator [unidentified eubacterium
SCB49]
gi|149356553|gb|EDM45109.1| Mn-dependent transcriptional regulator [unidentified eubacterium
SCB49]
Length = 218
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 65/131 (49%), Gaps = 3/131 (2%)
Query: 16 LSEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDS---HLTE 72
+ E+ +KA++ L + ++ L + + ++ L +G + +TE
Sbjct: 5 IRENYIKALFYLHQKNEDISLSDLGTELQVSKPSANDMIKKLQHEGIVISKKYKPIRITE 64
Query: 73 SGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFD 132
G++ A ++IR+HRL E +L + + E H A + EH +D+ +R+ +G P D
Sbjct: 65 KGKQRAAEIIRKHRLSEMFLMQIMKFGWEEVHEIAEELEHIKTDQFFDRMDELMGFPKTD 124
Query: 133 PHGDPIPTEEG 143
PHG PIP + G
Sbjct: 125 PHGSPIPDKNG 135
>gi|5542114|pdb|1BI1| Chain , Structure Of Apo- And Holo-Diphtheria Toxin Repressor
gi|5542117|pdb|1BI3|A Chain A, Structure Of Apo- And Holo-Diphtheria Toxin Repressor
gi|5542118|pdb|1BI3|B Chain B, Structure Of Apo- And Holo-Diphtheria Toxin Repressor
gi|5821818|pdb|1BI0| Chain , Structure Of Apo- And Holo-Diphtheria Toxin Repressor
Length = 226
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 3/131 (2%)
Query: 12 DVRRLSEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDS--- 68
D+ +E L+ IY LEE+G+ R+A + + + G +
Sbjct: 3 DLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSL 62
Query: 69 HLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
+T +GR A V+R+HRL E+ L++ G + ++ H +A + EH +SDE + R+ L +
Sbjct: 63 QMTPTGRTLATAVMRKHRLAERLLTDIIGLDINKVHDEAXRWEHVMSDEVERRLVKVLKD 122
Query: 129 PLFDPHGDPIP 139
P G+PIP
Sbjct: 123 VSRSPFGNPIP 133
>gi|16752695|ref|NP_444962.1| ABC transporter, permease protein, putative [Chlamydophila
pneumoniae AR39]
gi|33241687|ref|NP_876628.1| putative integral membrane protein [Chlamydophila pneumoniae
TW-183]
gi|7189337|gb|AAF38257.1| ABC transporter, permease protein, putative [Chlamydophila
pneumoniae AR39]
gi|33236196|gb|AAP98285.1| putative integral membrane protein [Chlamydophila pneumoniae
TW-183]
Length = 451
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 70 LTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNP 129
LT+ GR AL+++R HRL E YL + H A + EH L++E + L +P
Sbjct: 376 LTKKGRSEALRLVRAHRLWESYLVNSLDFSKESVHELAEEIEHVLTEELDHTLTEILNDP 435
Query: 130 LFDPHGDPIPTEEGEV 145
+DPH IP ++ EV
Sbjct: 436 CYDPHRQIIPNKKKEV 451
>gi|15618262|ref|NP_224547.1| Integral Membrane Protein [Chlamydophila pneumoniae CWL029]
gi|15835880|ref|NP_300404.1| integral membrane protein [Chlamydophila pneumoniae J138]
gi|14195422|sp|Q9Z8J6|Y347_CHLPN Probable metal transport system membrane protein
CPn_0347/CP_0413/CPj0347/CpB0354
gi|4376622|gb|AAD18491.1| Integral Membrane Protein [Chlamydophila pneumoniae CWL029]
gi|8978719|dbj|BAA98555.1| integral membrane protein [Chlamydophila pneumoniae J138]
Length = 448
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 70 LTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNP 129
LT+ GR AL+++R HRL E YL + H A + EH L++E + L +P
Sbjct: 373 LTKKGRSEALRLVRAHRLWESYLVNSLDFSKESVHELAEEIEHVLTEELDHTLTEILNDP 432
Query: 130 LFDPHGDPIPTEEGEV 145
+DPH IP ++ EV
Sbjct: 433 CYDPHRQIIPNKKKEV 448
>gi|81427994|ref|YP_394993.1| Putative metal(Iron)-dependent transcriptional regulator, DtxR
family [Lactobacillus sakei subsp. sakei 23K]
gi|78609635|emb|CAI54681.1| Putative metal(Iron)-dependent transcriptional regulator, DtxR
family [Lactobacillus sakei subsp. sakei 23K]
Length = 220
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 3/132 (2%)
Query: 18 EDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYC--LPPDS-HLTESG 74
ED LK I+ L D V + A + ++ +++ L K+ Y P LT G
Sbjct: 6 EDYLKIIFELGGDAKKVTNKEILAGLNVSAASVTEMVNKLVKENYVNHTPYQGIQLTSEG 65
Query: 75 RKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDPH 134
+ A ++R HRL E +L + Y+ + H +A + EH + + ER+A LG+P PH
Sbjct: 66 AREAALLVRNHRLWEVFLVDKLHYQFNTVHPEAEQLEHVTNHDLAERLADFLGHPKRCPH 125
Query: 135 GDPIPTEEGEVQ 146
G IP +GE +
Sbjct: 126 GGIIPNAKGEFE 137
>gi|3891798|pdb|2TDX| Chain , Diphtheria Tox Repressor (C102d Mutant) Complexed With
Nickel
gi|3891903|pdb|1DDN|A Chain A, Diphtheria Tox Repressor (C102d Mutant) Complexed With
Nickel And With Tox Dna Operator
gi|3891904|pdb|1DDN|B Chain B, Diphtheria Tox Repressor (C102d Mutant) Complexed With
Nickel And With Tox Dna Operator
gi|3891905|pdb|1DDN|C Chain C, Diphtheria Tox Repressor (C102d Mutant) Complexed With
Nickel And With Tox Dna Operator
gi|3891906|pdb|1DDN|D Chain D, Diphtheria Tox Repressor (C102d Mutant) Complexed With
Nickel And With Tox Dna Operator
Length = 226
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 3/131 (2%)
Query: 12 DVRRLSEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDS--- 68
D+ +E L+ IY LEE+G+ R+A + + + G +
Sbjct: 3 DLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSL 62
Query: 69 HLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
+T +GR A V+R+HRL E+ L++ G + ++ H +A + EH +SDE + R+ L +
Sbjct: 63 QMTPTGRTLATAVMRKHRLAERLLTDIIGLDINKVHDEADRWEHVMSDEVERRLVKVLKD 122
Query: 129 PLFDPHGDPIP 139
P G+PIP
Sbjct: 123 VSRSPFGNPIP 133
>gi|89210787|ref|ZP_01189172.1| FeoA [Halothermothrix orenii H 168]
gi|89159641|gb|EAR79304.1| FeoA [Halothermothrix orenii H 168]
Length = 73
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 238 LTTLRQGEEATIAGISKACRGANRRRLLDLGFVRGSRIAIDLTSPLGNPTAYVVRGTAIA 297
LT L G + + I+ RG RRRLLDLG + G+ + SP G+PTAY++RGT +A
Sbjct: 3 LTQLPIGTKGKV--INLTARGNKRRRLLDLGLIPGTTVEPRRRSPSGDPTAYLIRGTVLA 60
Query: 298 LRRDQ 302
LR+++
Sbjct: 61 LRKEE 65
>gi|77919546|ref|YP_357361.1| iron repressor, putative [Pelobacter carbinolicus DSM 2380]
gi|77545629|gb|ABA89191.1| iron repressor, putative [Pelobacter carbinolicus DSM 2380]
Length = 218
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 8/129 (6%)
Query: 17 SEDTLKAIY-SLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDS--HLTES 73
+ED L+A++ ++ E+G D A+L L + ++ L L +Q +L
Sbjct: 7 AEDILEAVWIAVVEEG-----DNSASLEALDVEAREPALMDLERQALIEVKGERVYLRSE 61
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
GR KV+RRHRL E+ + + + S + +AC+ EH L++ RI L +P P
Sbjct: 62 GRIAGEKVVRRHRLAERLMMDILDLKGSNANAKACEFEHLLNEGVDTRICTLLNHPTTCP 121
Query: 134 HGDPIPTEE 142
HG PIP E
Sbjct: 122 HGRPIPLGE 130
>gi|62425787|ref|ZP_00380918.1| COG1321: Mn-dependent transcriptional regulator [Brevibacterium
linens BL2]
Length = 219
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 21 LKAIYSLEEDGL-PVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDSHL--TESGRKY 77
LK+I LEE + P+ A L + Q + + + D HL T GR+
Sbjct: 3 LKSIIELEEQSIVPLRARIAERLDHSGPTVSQTVARMERDGLLHVSNDRHLELTAEGRRI 62
Query: 78 ALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDPHGDP 137
A +V+R+HRL E+ L++ G E H +AC+ EH +S++ + ++ L P+G+P
Sbjct: 63 ATEVMRKHRLAERLLADVVGLEWELVHDEACRWEHVMSEQVERKLVTLLPEIASGPYGNP 122
Query: 138 IP 139
IP
Sbjct: 123 IP 124
>gi|116621297|ref|YP_823453.1| iron (metal) dependent repressor, DtxR family [Solibacter usitatus
Ellin6076]
gi|116224459|gb|ABJ83168.1| iron (metal) dependent repressor, DtxR family [Solibacter usitatus
Ellin6076]
Length = 218
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 54/207 (26%), Positives = 93/207 (44%), Gaps = 5/207 (2%)
Query: 18 EDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGY---CLPPDSHLTESG 74
E+ LKAI E +G V A LA + + L + LT G
Sbjct: 10 ENYLKAIAEAESEGETVKAVTLARWLHVSAPAVTMAIKRLRRDALIHVAAEGQLSLTAPG 69
Query: 75 RKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDPH 134
R+ A +++ RH L+E+ L+E G E + H +A + EH +S + + ++ RLG PH
Sbjct: 70 REIANRLLNRHHLIERMLTEIFGLEWYKVHDEAEQLEHAVSADFERKLIERLGVESECPH 129
Query: 135 GDPIPTEEGEVQSVEGVHA-DELPDDSYVRVIHIEDEPADLYRQIETIGFFRGAVFHLLR 193
G+ + + + G+ DE V V+ + + +L ++++G G +L
Sbjct: 130 GNRVGMDSPGDRRRRGLKTLDETAPGERVAVVSVFERDRELLEHLDSVGIRPGVELEVL- 188
Query: 194 TDTDGVHLSFEGEQFLLPQEAAHNLTV 220
D + LS GE+F L + +A + V
Sbjct: 189 ADGAELELSAAGERFTLDRTSAARVWV 215
>gi|15678956|ref|NP_276073.1| iron repressor [Methanothermobacter thermautotrophicus str. Delta
H]
gi|2622034|gb|AAB85434.1| iron repressor [Methanothermobacter thermautotrophicus str. Delta
H]
Length = 140
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 73/142 (51%), Gaps = 5/142 (3%)
Query: 1 MNLFSNLLFRFDVRRLSEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQ 60
MN++S +F ++ R E+ L+ +Y L G+ +D L++ ++ ++ +L LH+
Sbjct: 1 MNIYSIGVF-MELTRSMENYLETLYRLSSHGIVKTSD-LSSRMNVRPASVTQMLKRLHEM 58
Query: 61 G---YCLPPDSHLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDE 117
G Y + LT+ GR+ A V+RRH +LE + G + + +A + +H L E
Sbjct: 59 GLVIYHPYLGAELTDEGREIAEMVLRRHMILECFFHNVLGMDLDSSYEEASRMKHELFRE 118
Query: 118 EQERIAVRLGNPLFDPHGDPIP 139
+ + L NP PHG PIP
Sbjct: 119 TELALMRYLRNPARCPHGIPIP 140
>gi|92090162|ref|ZP_01275059.1| Iron dependent repressor:FeoA [Lactobacillus reuteri 100-23]
gi|91803070|gb|EAS87972.1| Iron dependent repressor:FeoA [Lactobacillus reuteri 100-23]
Length = 224
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 3/136 (2%)
Query: 16 LSEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCL-PPDS--HLTE 72
+ ED LK I+ L V+ ++ G+ + ++ L +G + P + LTE
Sbjct: 4 MKEDYLKIIFELGGSHKKVSNKEISLGLGIAAGSVTEMISKLADEGLVVHEPYAGISLTE 63
Query: 73 SGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFD 132
G+KYA +++R+HRL E +L + Y ++ H++A EH SD + L +P
Sbjct: 64 KGQKYAAELVRKHRLWETFLVDKLHYNFADVHSEAEILEHQTSDRLATALDAFLQHPDHC 123
Query: 133 PHGDPIPTEEGEVQSV 148
PHG IP+ G+ V
Sbjct: 124 PHGGVIPSANGKFPDV 139
>gi|134046009|ref|YP_001097495.1| iron dependent repressor [Methanococcus maripaludis C5]
gi|132663634|gb|ABO35280.1| iron dependent repressor [Methanococcus maripaludis C5]
Length = 134
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 18 EDTLKAIY-SLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQG---YCLPPDSHLTES 73
ED L+ I+ + E+ P+ LA L ++ + + LH G Y +L ES
Sbjct: 7 EDYLENIFLFIRENKRPIKTTELAKLMNVQPAAVTSMAKKLHGDGLIDYQPYVGINLKES 66
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
G K A + IR+HR++E +L+E G + +ACK EH +SD+ E++ + P P
Sbjct: 67 GEKIAKETIRKHRIIECFLTEILGLDLEFAQEEACKIEHAVSDKTIEKLYEFIDRPEKCP 126
Query: 134 HG 135
HG
Sbjct: 127 HG 128
>gi|15988215|pdb|1FWZ|A Chain A, Glu20ala Dtxr
Length = 226
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 3/131 (2%)
Query: 12 DVRRLSEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDS--- 68
D+ +E L+ IY LE +G+ R+A + + + G +
Sbjct: 3 DLVDTTEMYLRTIYELEAEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSL 62
Query: 69 HLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGN 128
+T +GR A V+R+HRL E+ L++ G + ++ H +A + EH +SDE + R+ L +
Sbjct: 63 QMTPTGRTLATAVMRKHRLAERLLTDIIGLDINKVHDEAXRWEHVMSDEVERRLVKVLKD 122
Query: 129 PLFDPHGDPIP 139
P G+PIP
Sbjct: 123 VSRSPFGNPIP 133
>gi|150403570|ref|YP_001330864.1| iron dependent repressor [Methanococcus maripaludis C7]
gi|150034600|gb|ABR66713.1| iron dependent repressor [Methanococcus maripaludis C7]
Length = 134
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 18 EDTLKAIY-SLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQG---YCLPPDSHLTES 73
ED L+ I+ + E+ P+ LA L ++ + + LH G Y +L ES
Sbjct: 7 EDYLENIFLFIRENKRPIKTTELAKLMNVQPAAVTSMAKKLHGDGLIDYQPYIGINLKES 66
Query: 74 GRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDP 133
G K A + IR+HR++E +L+E G + +ACK EH +SD+ E++ + P P
Sbjct: 67 GEKIAKETIRKHRIIECFLTEILGLDLEFAQEEACKIEHAVSDKTIEKLYEFIDRPEKCP 126
Query: 134 HG 135
HG
Sbjct: 127 HG 128
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.320 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,177,762,511
Number of Sequences: 5470121
Number of extensions: 52662407
Number of successful extensions: 119298
Number of sequences better than 1.0e-05: 224
Number of HSP's better than 0.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 119026
Number of HSP's gapped (non-prelim): 235
length of query: 310
length of database: 1,894,087,724
effective HSP length: 132
effective length of query: 178
effective length of database: 1,172,031,752
effective search space: 208621651856
effective search space used: 208621651856
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)