BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= TDE1593
(596 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|42527101|ref|NP_972199.1| Fe-hydrogenase [Treponema dent... 1226 0.0
gi|153855001|ref|ZP_01996214.1| hypothetical protein DORLON... 834 0.0
gi|139438951|ref|ZP_01772411.1| Hypothetical protein COLAER... 645 0.0
gi|125972863|ref|YP_001036773.1| hydrogenase, Fe-only [Clos... 536 e-150
gi|4927278|gb|AAD33071.1| hydrogenase-1 [Clostridium thermo... 533 e-150
gi|146296869|ref|YP_001180640.1| hydrogenase, Fe-only [Cald... 529 e-148
gi|118725240|ref|ZP_01573883.1| hydrogenases, Fe-only [Clos... 528 e-148
gi|154498755|ref|ZP_02037133.1| hypothetical protein BACCAP... 514 e-144
gi|20807375|ref|NP_622546.1| NADH dehydrogenase/NADH:ubiqui... 511 e-143
gi|14250935|emb|CAC39231.1| HymC protein [Eubacterium acida... 503 e-140
gi|83590553|ref|YP_430562.1| Iron hydrogenase, small subuni... 502 e-140
gi|76795773|ref|ZP_00778144.1| Ferredoxin:4Fe-4S ferredoxin... 494 e-138
gi|106887714|ref|ZP_01355000.1| Ferredoxin:4Fe-4S ferredoxi... 491 e-137
gi|118725455|ref|ZP_01574095.1| hydrogenases, Fe-only [Clos... 487 e-136
gi|89211311|ref|ZP_01189682.1| Ferredoxin:4Fe-4S ferredoxin... 485 e-135
gi|153814131|ref|ZP_01966799.1| hypothetical protein RUMTOR... 484 e-135
gi|106894819|ref|ZP_01361933.1| Ferredoxin:4Fe-4S ferredoxi... 483 e-134
gi|147678345|ref|YP_001212560.1| hypothetical hydrogenase s... 479 e-133
gi|121534125|ref|ZP_01665950.1| hydrogenases, Fe-only [Ther... 476 e-132
gi|57235003|ref|YP_180897.1| [Fe] hydrogenase, large subuni... 473 e-131
gi|150391798|ref|YP_001321847.1| hydrogenase, Fe-only [Alka... 470 e-130
gi|150385823|ref|ZP_01924420.1| hydrogenase, Fe-only [Victi... 469 e-130
gi|153940304|ref|YP_001391107.1| [Fe] hydrogenase [Clostrid... 468 e-130
gi|148379807|ref|YP_001254348.1| catalytic subunit of iron-... 467 e-129
gi|85858940|ref|YP_461142.1| iron only hydrogenase large su... 466 e-129
gi|134299508|ref|YP_001113004.1| hydrogenases, Fe-only [Des... 465 e-129
gi|147668873|ref|YP_001213691.1| hydrogenase, Fe-only [Deha... 465 e-129
gi|73748099|ref|YP_307338.1| putative [Fe] hydrogenase, lar... 464 e-129
gi|116748289|ref|YP_844976.1| hydrogenases, Fe-only [Syntro... 459 e-127
gi|148269859|ref|YP_001244319.1| hydrogenase, Fe-only [Ther... 459 e-127
gi|89210761|ref|ZP_01189146.1| Ferredoxin:4Fe-4S ferredoxin... 457 e-126
gi|114566548|ref|YP_753702.1| iron hydrogenase, small subun... 457 e-126
gi|51894344|ref|YP_077035.1| iron hydrogenase [Symbiobacter... 455 e-126
gi|15642974|ref|NP_228016.1| NADP-reducing hydrogenase, sub... 454 e-126
gi|126701030|ref|YP_001089927.1| putative iron-only hydroge... 454 e-125
gi|145952557|ref|ZP_01801566.1| hypothetical protein CdifQ_... 453 e-125
gi|154495355|ref|ZP_02034360.1| hypothetical protein PARMER... 450 e-124
gi|94448908|emb|CAJ44289.1| ferredoxin hydrogenase [Helioba... 449 e-124
gi|147677712|ref|YP_001211927.1| hypothetical hydrogenase s... 447 e-124
gi|150021476|ref|YP_001306830.1| hydrogenase, Fe-only [Ther... 445 e-123
gi|154248935|ref|YP_001409760.1| hydrogenase, Fe-only [Ferv... 444 e-122
gi|150007689|ref|YP_001302432.1| NADH:ubiquinone oxidoreduc... 441 e-122
gi|134301119|ref|YP_001114615.1| hydrogenases, Fe-only [Des... 436 e-120
gi|77919232|ref|YP_357047.1| NAD-reducing iron-only hydroge... 431 e-119
gi|106893586|ref|ZP_01360711.1| Ferredoxin:4Fe-4S ferredoxi... 426 e-117
gi|156107991|gb|EDO09736.1| hypothetical protein BACOVA_056... 424 e-117
gi|77919204|ref|YP_357019.1| NAD-reducing iron-only hydroge... 423 e-116
gi|29345534|ref|NP_809037.1| NADH:ubiquinone oxidoreductase... 423 e-116
gi|145621664|ref|ZP_01777633.1| hydrogenase, Fe-only [Petro... 423 e-116
gi|145623074|ref|ZP_01779022.1| hydrogenase, Fe-only [Petro... 421 e-116
gi|150385266|ref|ZP_01923911.1| hydrogenase, Fe-only [Victi... 421 e-116
gi|39933211|ref|NP_945487.1| hydrogenase gamma-fused hydrog... 419 e-115
gi|466366|gb|AAA87057.1| potential NAD-reducing hydrogenase... 417 e-114
gi|150388476|ref|YP_001318525.1| hydrogenase, Fe-only [Alka... 416 e-114
gi|488597|gb|AAA85785.1| hydrogenase-1 [Clostridium sacchar... 414 e-114
gi|74229867|gb|ABA00462.1| Fe-hydrogenase large subunit [Et... 414 e-114
gi|115525856|ref|YP_782767.1| hydrogenases, Fe-only [Rhodop... 414 e-113
gi|89210553|ref|ZP_01188941.1| Ferredoxin:4Fe-4S ferredoxin... 413 e-113
gi|149384911|gb|ABR25256.1| hydrogenase [Clostridium butyri... 413 e-113
gi|120602429|ref|YP_966829.1| hydrogenases, Fe-only [Desulf... 411 e-113
gi|46580181|ref|YP_010989.1| [Fe] hydrogenase gamma [Desulf... 411 e-113
gi|56387327|gb|AAV86076.1| uptake hydrogenase [Clostridium ... 408 e-112
gi|114567942|ref|YP_755096.1| (Fe) hydrogenase, large subun... 407 e-111
gi|50344697|dbj|BAD29951.1| hydrogenase [Clostridium parapu... 406 e-111
gi|134299511|ref|YP_001113007.1| hydrogenases, Fe-only [Des... 402 e-110
gi|106886332|ref|ZP_01353674.1| Ferredoxin:4Fe-4S ferredoxi... 402 e-110
gi|156864730|gb|EDO58161.1| hypothetical protein CLOL250_01... 399 e-109
gi|19547863|gb|AAK60409.1| hydrogenase [Neocallimastix fron... 394 e-107
gi|153954875|ref|YP_001395640.1| Predicted Fe-only hydrogen... 393 e-107
gi|114843909|ref|ZP_01454368.1| hydrogenase large subunit-l... 392 e-107
gi|150018922|ref|YP_001311176.1| hydrogenase, Fe-only [Clos... 387 e-105
gi|153812805|ref|ZP_01965473.1| hypothetical protein RUMOBE... 385 e-105
gi|125972951|ref|YP_001036861.1| hydrogenase, Fe-only [Clos... 383 e-104
gi|110799871|ref|YP_697035.1| iron hydrogenase [Clostridium... 383 e-104
gi|18311328|ref|NP_563262.1| hydrogenase [Clostridium perfr... 383 e-104
gi|110803368|ref|YP_699606.1| iron hydrogenase [Clostridium... 382 e-104
gi|77920096|ref|YP_357911.1| iron-containing hydrogenase, H... 380 e-103
gi|130069|sp|P29166|PHF1_CLOPA Iron hydrogenase 1 ([Fe] hyd... 377 e-102
gi|19548180|gb|AAL90459.1|AF446076_1 [Fe]-hydrogenase [Piro... 375 e-102
gi|15893326|ref|NP_346675.1| Hydrogene dehydrogenase [Clost... 375 e-102
gi|118725176|ref|ZP_01573819.1| hydrogenases, Fe-only [Clos... 372 e-101
gi|118579914|ref|YP_901164.1| hydrogenases, Fe-only [Peloba... 369 e-100
gi|154248924|ref|YP_001409749.1| hydrogenase, Fe-only [Ferv... 369 e-100
gi|150020388|ref|YP_001305742.1| hydrogenase large subunit ... 367 1e-99
gi|109648206|ref|ZP_01372109.1| Twin-arginine translocation... 365 5e-99
gi|89897458|ref|YP_520945.1| putative hydrogenase large sub... 364 7e-99
gi|154505523|ref|ZP_02042261.1| hypothetical protein RUMGNA... 362 3e-98
gi|51947501|gb|AAU14235.1| hydrogenosomal Fe- hydrogenase [... 355 3e-96
gi|148270497|ref|YP_001244957.1| hydrogenase large subunit ... 347 9e-94
gi|15644177|ref|NP_229226.1| Fe-hydrogenase, subunit alpha ... 346 3e-93
gi|4034791|emb|CAA76373.1| hydrogenase [Nyctotherus ovalis] 346 3e-93
gi|147677003|ref|YP_001211218.1| iron only hydrogenase larg... 345 5e-93
gi|134298338|ref|YP_001111834.1| hydrogenases, Fe-only [Des... 344 1e-92
gi|118444478|ref|YP_878332.1| hydrogenase [Clostridium novy... 343 2e-92
gi|153807872|ref|ZP_01960540.1| hypothetical protein BACCAC... 342 3e-92
gi|123420195|ref|XP_001305709.1| 64kDa iron hydrogenase, pu... 342 3e-92
gi|123438804|ref|XP_001310180.1| 64kDa iron hydrogenase, pu... 340 1e-91
gi|11127701|gb|AAG31037.1|AF262401_1 putative 64kDa iron hy... 339 3e-91
gi|125975482|ref|YP_001039392.1| hydrogenase, Fe-only [Clos... 335 5e-90
gi|133908168|gb|ABO42543.1| iron-only hydrogenase large sub... 321 1e-85
gi|109646734|ref|ZP_01370638.1| hydrogenase large subunit-l... 316 3e-84
gi|118443000|ref|YP_877778.1| hydrogenase (Fe) large chain ... 315 5e-84
gi|154496519|ref|ZP_02035215.1| hypothetical protein BACCAP... 315 5e-84
gi|110799819|ref|YP_695522.1| [Fe] hydrogenase [Clostridium... 310 2e-82
gi|89893682|ref|YP_517169.1| hypothetical protein DSY0936 [... 309 5e-82
gi|156866470|gb|EDO59842.1| hypothetical protein CLOLEP_038... 306 3e-81
gi|51244331|ref|YP_064215.1| Fe-center hydrogenase, large s... 300 2e-79
gi|78355522|ref|YP_386971.1| Ferredoxin hydrogenase [Desulf... 298 7e-79
gi|145953834|ref|ZP_01802842.1| hypothetical protein CdifQ_... 296 2e-78
gi|126700933|ref|YP_001089830.1| hydrogenase [Clostridium d... 296 2e-78
gi|83590717|ref|YP_430726.1| Ferredoxin hydrogenase [Moorel... 294 1e-77
gi|154414518|ref|XP_001580286.1| Iron only hydrogenase larg... 293 2e-77
gi|154421999|ref|XP_001584012.1| TvhydB protein, putative [... 292 4e-77
gi|50953715|gb|AAT90438.1| plastid FeFe-hydrogenase precurs... 292 5e-77
gi|110801841|ref|YP_698262.1| periplasmic [Fe] hydrogenase ... 292 5e-77
gi|23664246|gb|AAN39277.1| iron hydrogenase precursor [Neoc... 292 5e-77
gi|150018615|ref|YP_001310869.1| hydrogenase, Fe-only [Clos... 291 1e-76
gi|51894427|ref|YP_077118.1| iron hydrogenase [Symbiobacter... 289 5e-76
gi|6650985|gb|AAF22114.1| Fe-only hydrogenase [Megasphaera ... 288 7e-76
gi|123977205|ref|XP_001330775.1| iron hydrogenase [Trichomo... 288 9e-76
gi|13311187|emb|CAC34419.1| Fe-hydrogenase [Scenedesmus obl... 287 2e-75
gi|9837540|gb|AAG00591.1|AF289201_1 Fe-hydrogenase precurso... 284 1e-74
gi|1171117|gb|AAC47159.1| iron hydrogenase [Trichomonas vag... 283 2e-74
gi|106886998|ref|ZP_01354322.1| Ferredoxin hydrogenase [Clo... 283 2e-74
gi|114567439|ref|YP_754593.1| Ferredoxin hydrogenase [Syntr... 283 2e-74
gi|18073435|emb|CAC83291.1| Fe-hydrogenase ['Chlorella' fus... 282 5e-74
gi|153953475|ref|YP_001394240.1| Predicted Fe-Fe hydrogenas... 282 6e-74
gi|123479045|ref|XP_001322682.1| Iron only hydrogenase larg... 281 1e-73
gi|150016647|ref|YP_001308901.1| hydrogenase, Fe-only [Clos... 278 1e-72
gi|4029298|emb|CAA76342.1| hydrogenase [Nyctotherus ovalis] 270 2e-70
gi|123505468|ref|XP_001328981.1| Iron only hydrogenase larg... 269 4e-70
gi|78357324|ref|YP_388773.1| Ferredoxin hydrogenase [Desulf... 266 4e-69
gi|1914864|emb|CAA72423.1| cytochrome-c3 hydrogenase [Desul... 265 6e-69
gi|1345094|gb|AAC47160.1| TvhydB protein 263 4e-68
gi|116748293|ref|YP_844980.1| hydrogenases, Fe-only [Syntro... 262 5e-68
gi|24375408|ref|NP_719451.1| periplasmic Fe hydrogenase, la... 261 1e-67
gi|113971582|ref|YP_735375.1| hydrogenases, Fe-only [Shewan... 260 2e-67
gi|88660702|gb|ABD48098.1| periplasmic Fe-hydrogenase large... 259 3e-67
gi|117919163|ref|YP_868355.1| response regulator receiver p... 257 2e-66
gi|83282978|gb|ABC01050.1| Fe-hydrogenase [uncultured bacte... 245 5e-63
gi|77921079|gb|ABB05318.1| Fe-hydrogenase [uncultured bacte... 244 2e-62
gi|77921081|gb|ABB05319.1| Fe-hydrogenase [uncultured bacte... 243 2e-62
gi|130071|sp|P13629|PHFL_DESVO Periplasmic [Fe] hydrogenase... 243 2e-62
gi|77921087|gb|ABB05322.1| Fe-hydrogenase [uncultured bacte... 238 8e-61
gi|77921083|gb|ABB05320.1| Fe-hydrogenase [uncultured bacte... 237 1e-60
gi|123471484|ref|XP_001318941.1| TvhydB protein, putative [... 236 5e-60
gi|78355128|ref|YP_386577.1| Ferredoxin hydrogenase [Desulf... 235 7e-60
gi|83282984|gb|ABC01053.1| Fe-hydrogenase [uncultured bacte... 235 7e-60
gi|13022069|gb|AAK11625.1|AF331719_1 [Fe] hydrogenase large... 235 8e-60
gi|40890031|pdb|1E08|A Chain A, Structural Model Of The [fe... 232 6e-59
gi|46580179|ref|YP_010987.1| periplasmic [Fe] hydrogenase, ... 232 7e-59
gi|83282982|gb|ABC01052.1| Fe-hydrogenase [uncultured bacte... 230 3e-58
gi|154414924|ref|XP_001580488.1| Iron only hydrogenase larg... 229 3e-58
gi|19547861|gb|AAK26192.1| iron hydrogenase HDGL2 [Trichomo... 225 5e-57
gi|77921071|gb|ABB05314.1| Fe-hydrogenase [uncultured bacte... 225 8e-57
gi|19547859|gb|AAK26191.1| iron hydrogenase HDGL1 [Trichomo... 224 1e-56
gi|77921069|gb|ABB05313.1| Fe-hydrogenase [uncultured bacte... 222 7e-56
gi|77921085|gb|ABB05321.1| Fe-hydrogenase [uncultured bacte... 222 7e-56
gi|77921093|gb|ABB05325.1| Fe-hydrogenase [uncultured bacte... 222 7e-56
gi|19548182|gb|AAL90460.1|AF446077_1 [Fe]-hydrogenase [Tric... 221 1e-55
gi|12581498|gb|AAG59621.1|AF276706_1 Fe-hydrogenase [Scened... 220 2e-55
gi|77921075|gb|ABB05316.1| Fe-hydrogenase [uncultured bacte... 218 7e-55
gi|11127703|gb|AAG31038.1|AF262402_1 putative iron hydrogen... 209 5e-52
gi|50404218|gb|AAT76846.1| hydrogenase [uncultured Clostrid... 206 5e-51
gi|92399064|gb|ABE76296.1| hydrogenase [Clostridium butyricum] 204 1e-50
gi|52854761|gb|AAU88253.1| hydrogenase [Clostridium sp. CCH... 204 1e-50
gi|50404216|gb|AAT76845.1| hydrogenase [uncultured Clostrid... 201 2e-49
gi|52854759|gb|AAU88252.1| hydrogenase [Clostridium sp. CCH... 197 1e-48
gi|16754852|emb|CAD10687.1| Narf-like protein [Medicago tru... 195 6e-48
gi|71074885|ref|XP_769974.1| Fe-hydrogenase [Giardia lambli... 193 2e-47
gi|18026272|gb|AAL23573.1| iron-hydrogenase HydA2 [Chlamydo... 193 3e-47
gi|150018812|ref|YP_001311066.1| Ferredoxin hydrogenase [Cl... 193 3e-47
gi|37911261|gb|AAR04931.1| iron-hydrogenase HydA2; Fe-only ... 192 4e-47
gi|83282948|gb|ABC01035.1| Fe-hydrogenase [uncultured bacte... 191 1e-46
gi|83282972|gb|ABC01047.1| Fe-hydrogenase [uncultured bacte... 191 2e-46
gi|118099604|ref|XP_415606.2| PREDICTED: similar to nuclear... 191 2e-46
gi|115613918|ref|XP_001191432.1| PREDICTED: hypothetical pr... 190 2e-46
gi|37911254|gb|AAR04930.1| iron-hydrogenase HydA2; Fe-only ... 189 3e-46
gi|77921097|gb|ABB05327.1| Fe-hydrogenase [uncultured bacte... 188 1e-45
gi|77921077|gb|ABB05317.1| Fe-hydrogenase [uncultured bacte... 186 4e-45
gi|61557212|ref|NP_001013201.1| nuclear prelamin A recognit... 186 5e-45
gi|83282970|gb|ABC01046.1| Fe-hydrogenase [uncultured bacte... 185 9e-45
gi|149750886|ref|XP_001496296.1| PREDICTED: hypothetical pr... 184 1e-44
gi|11127699|gb|AAG31036.1|AF262400_1 putative iron hydrogen... 182 4e-44
gi|9963974|gb|AAG09783.1|AF248542_1 Fe-hydrogenase [Entamoe... 182 4e-44
gi|67482769|ref|XP_656685.1| Fe-hydrogenase [Entamoeba hist... 182 5e-44
gi|149637614|ref|XP_001513248.1| PREDICTED: similar to nucl... 182 5e-44
gi|83282966|gb|ABC01044.1| Fe-hydrogenase [uncultured bacte... 180 2e-43
gi|152941142|gb|ABS45008.1| nuclear prelamin A recognition ... 179 5e-43
gi|84794308|emb|CAJ55835.1| hypothetical protein [Medicago ... 179 6e-43
gi|75042593|sp|Q5RF36|NARFL_PONPY Nuclear prelamin A recogn... 179 7e-43
gi|150387422|sp|A4FV58|NARFL_BOVIN Nuclear prelamin A recog... 178 7e-43
gi|11968051|ref|NP_071938.1| nuclear prelamin A recognition... 178 1e-42
gi|77921095|gb|ABB05326.1| Fe-hydrogenase [uncultured bacte... 177 1e-42
gi|118097948|ref|XP_414836.2| PREDICTED: hypothetical prote... 177 1e-42
gi|50539744|ref|NP_001002342.1| hypothetical protein LOC436... 177 1e-42
gi|67472697|ref|XP_652137.1| Fe-hydrogenase [Entamoeba hist... 177 2e-42
gi|31981017|ref|NP_080514.2| nuclear prelamin A recognition... 177 2e-42
gi|12851667|dbj|BAB29126.1| unnamed protein product [Mus mu... 177 2e-42
gi|14336719|gb|AAK61251.1|AE006464_19 Weakly similar to ORF... 177 2e-42
gi|148887155|sp|Q7TMW6|NARFL_MOUSE Nuclear prelamin A recog... 177 2e-42
gi|62897571|dbj|BAD96725.1| nuclear prelamin A recognition ... 177 3e-42
gi|31217349|gb|AAH52830.1| Nuclear prelamin A recognition f... 176 6e-42
gi|74211319|dbj|BAE26421.1| unnamed protein product [Mus mu... 175 9e-42
gi|126309437|ref|XP_001368190.1| PREDICTED: similar to nucl... 174 1e-41
gi|52854763|gb|AAU88254.1| hydrogenase [Clostridium roseum]... 174 2e-41
gi|10438504|dbj|BAB15261.1| unnamed protein product [Homo s... 174 2e-41
gi|126335307|ref|XP_001365922.1| PREDICTED: hypothetical pr... 174 2e-41
gi|115455341|ref|NP_001051271.1| Os03g0748700 [Oryza sativa... 173 3e-41
gi|124430522|ref|NP_001074460.1| hypothetical protein LOC56... 172 4e-41
gi|83282976|gb|ABC01049.1| Fe-hydrogenase [uncultured bacte... 171 1e-40
gi|16330687|ref|NP_441415.1| NAD-reducing hydrogenase subun... 171 2e-40
gi|149758758|ref|XP_001490420.1| PREDICTED: similar to nucl... 170 2e-40
gi|47218040|emb|CAG11445.1| unnamed protein product [Tetrao... 170 3e-40
gi|15020824|emb|CAC44620.1| Narf-like protein [Arabidopsis ... 170 3e-40
gi|118791474|ref|XP_319772.3| ENSANGP00000006535 [Anopheles... 169 4e-40
gi|83282952|gb|ABC01037.1| Fe-hydrogenase [uncultured bacte... 169 4e-40
gi|114660220|ref|XP_510719.2| PREDICTED: nuclear prelamin A... 169 4e-40
gi|148236349|ref|NP_001085771.1| MGC80731 protein [Xenopus ... 169 5e-40
gi|6912524|ref|NP_036468.1| nuclear prelamin A recognition ... 169 6e-40
gi|119610203|gb|EAW89797.1| hCG30379, isoform CRA_g [Homo s... 168 1e-39
gi|81904446|sp|Q9CYQ7|NARF_MOUSE Nuclear prelamin A recogni... 168 1e-39
gi|31541951|ref|NP_080548.2| nuclear prelamin A recognition... 168 1e-39
gi|125587922|gb|EAZ28586.1| hypothetical protein OsJ_012069... 167 1e-39
gi|74013283|ref|XP_537935.2| PREDICTED: similar to nuclear ... 167 2e-39
gi|83282964|gb|ABC01043.1| Fe-hydrogenase [uncultured bacte... 166 5e-39
gi|109119243|ref|XP_001113550.1| PREDICTED: similar to nucl... 166 6e-39
gi|109119241|ref|XP_001113522.1| PREDICTED: similar to nucl... 165 7e-39
gi|114660222|ref|XP_001157570.1| PREDICTED: hypothetical pr... 165 8e-39
gi|85861200|ref|NP_001034296.1| nuclear prelamin A recognit... 164 1e-38
gi|84452151|ref|NP_001033707.1| nuclear prelamin A recognit... 164 1e-38
gi|156545553|ref|XP_001605725.1| PREDICTED: similar to ENSA... 164 1e-38
gi|73959191|ref|XP_547207.2| PREDICTED: similar to nuclear ... 164 2e-38
gi|126656037|ref|ZP_01727421.1| NAD-reducing hydrogenase su... 163 3e-38
gi|77921073|gb|ABB05315.1| Fe-hydrogenase [uncultured bacte... 163 4e-38
gi|76258515|ref|ZP_00766170.1| Ferredoxin:4Fe-4S ferredoxin... 163 4e-38
gi|14717798|gb|AAB18330.2| formate dehydrogenase alpha subu... 162 5e-38
gi|134284357|ref|NP_001077077.1| nuclear prelamin A recogni... 162 6e-38
gi|146386149|gb|ABC20599.2| formate dehydrogenase alpha sub... 162 7e-38
gi|148283121|ref|YP_431142.2| formate dehydrogenase subunit... 162 7e-38
gi|149055127|gb|EDM06944.1| rCG33233 [Rattus norvegicus] 162 7e-38
gi|118047436|ref|ZP_01516072.1| ferredoxin [Chloroflexus ag... 161 1e-37
gi|108871353|gb|EAT35578.1| nitrate, fromate, iron dehydrog... 161 1e-37
gi|109119247|ref|XP_001113437.1| PREDICTED: similar to nucl... 160 3e-37
gi|77993214|dbj|BAE46794.1| bidirectional hydrogenase U sub... 160 3e-37
gi|83591134|ref|YP_431143.1| Molybdopterin oxidoreductase F... 159 5e-37
gi|91200126|emb|CAJ73169.1| similar to molybdopterin contai... 159 5e-37
gi|109119245|ref|XP_001113463.1| PREDICTED: similar to nucl... 159 5e-37
gi|17228257|ref|NP_484805.1| NAD-reducing hydrogenase subun... 159 6e-37
gi|91202656|emb|CAJ72295.1| similar to molybdopterin oxidor... 159 7e-37
gi|75910853|ref|YP_325149.1| NAD-reducing hydrogenase subun... 158 8e-37
gi|87303134|ref|ZP_01085932.1| NAD-reducing hydrogenase sub... 158 9e-37
gi|37787353|gb|AAP50521.1| HoxU [Thiocapsa roseopersicina] 157 1e-36
gi|50404212|gb|AAT76843.1| hydrogenase [uncultured Clostrid... 157 2e-36
gi|50404197|gb|AAT76836.1| hydrogenase [uncultured Clostrid... 157 2e-36
gi|22652022|gb|AAN03566.1|AF381045_3 hydrogenase small diap... 157 2e-36
gi|152979362|ref|YP_001344991.1| formate dehydrogenase, alp... 157 3e-36
gi|50404220|gb|AAT76847.1| hydrogenase [uncultured Clostrid... 156 4e-36
gi|118744354|ref|ZP_01592348.1| ferredoxin [Geobacter lovle... 155 5e-36
gi|50404204|gb|AAT76839.1| hydrogenase [uncultured Clostrid... 155 6e-36
gi|116624102|ref|YP_826258.1| Hydrogen dehydrogenase [Solib... 155 6e-36
gi|156741351|ref|YP_001431480.1| ferredoxin [Roseiflexus ca... 154 2e-35
gi|119510366|ref|ZP_01629501.1| NAD-reducing hydrogenase su... 154 2e-35
gi|62632271|gb|AAX89150.1| HoxU [Allochromatium vinosum] 154 2e-35
gi|83590722|ref|YP_430731.1| Ferredoxin [Moorella thermoace... 154 2e-35
gi|13366094|dbj|BAB39384.1| hydrogenase diaphorase small su... 154 2e-35
gi|94265735|ref|ZP_01289472.1| Ferredoxin:4Fe-4S ferredoxin... 154 2e-35
gi|56751562|ref|YP_172263.1| NAD-reducing hydrogenase subun... 152 5e-35
gi|78044647|ref|YP_359587.1| NAD-dependent formate dehydrog... 152 5e-35
gi|81301366|ref|YP_401574.1| NAD-reducing hydrogenase HoxS ... 152 6e-35
gi|50404199|gb|AAT76837.1| hydrogenase [uncultured Clostrid... 152 9e-35
gi|148657644|ref|YP_001277849.1| ferredoxin [Roseiflexus sp... 151 1e-34
gi|14165461|ref|NP_114174.1| nuclear prelamin A recognition... 151 1e-34
gi|52424787|ref|YP_087924.1| hypothetical protein MS0732 [M... 151 1e-34
gi|150018600|ref|YP_001310854.1| ferredoxin [Clostridium be... 151 1e-34
gi|118746658|ref|ZP_01594587.1| molybdopterin oxidoreductas... 151 1e-34
gi|89055049|ref|YP_510500.1| formate dehydrogenase, alpha s... 151 1e-34
gi|70733834|ref|YP_257474.1| formate dehydrogenase, alpha s... 150 2e-34
gi|156376379|ref|XP_001630338.1| predicted protein [Nematos... 150 2e-34
gi|145618281|ref|ZP_01774341.1| molybdopterin oxidoreductas... 150 2e-34
gi|83591650|ref|YP_425402.1| Ferredoxin hydrogenase [Rhodos... 150 3e-34
gi|39997814|ref|NP_953765.1| NAD-reducing hydrogenase subun... 150 3e-34
gi|47215781|emb|CAG02577.1| unnamed protein product [Tetrao... 150 3e-34
gi|148554393|ref|YP_001261975.1| formate dehydrogenase, alp... 149 6e-34
gi|134299709|ref|YP_001113205.1| molybdopterin oxidoreducta... 149 7e-34
gi|119489272|ref|ZP_01622079.1| NAD-reducing hydrogenase su... 148 8e-34
gi|52854767|gb|AAU88256.1| hydrogenase [Clostridium roseum] 148 1e-33
gi|109492430|ref|XP_001081834.1| PREDICTED: similar to nucl... 148 1e-33
gi|90416712|ref|ZP_01224642.1| formate dehydrogenase, alpha... 148 1e-33
gi|83630912|gb|ABC26909.1| HoxU [Arthrospira platensis FACH... 148 1e-33
gi|118594392|ref|ZP_01551739.1| formate dehydrogenase, alph... 147 1e-33
gi|118470937|ref|YP_884577.1| formate dehydrogenase, alpha ... 147 2e-33
gi|118746217|ref|ZP_01594167.1| molybdopterin oxidoreductas... 147 2e-33
gi|78222329|ref|YP_384076.1| NAD-reducing hydrogenase subun... 147 2e-33
gi|119475816|ref|ZP_01616168.1| formate dehydrogenase, alph... 146 4e-33
gi|146305429|ref|YP_001185894.1| formate dehydrogenase, alp... 146 4e-33
gi|110601983|ref|ZP_01390138.1| Ferredoxin:4Fe-4S ferredoxi... 146 5e-33
gi|115421907|emb|CAJ48427.1| NAD-dependent formate dehydrog... 145 5e-33
gi|51246062|ref|YP_065946.1| NAD-reducing hydrogenase subun... 145 6e-33
gi|118581920|ref|YP_903170.1| formate dehydrogenase, alpha ... 145 6e-33
gi|14250937|emb|CAC39233.1| FdhB-I protein [Eubacterium aci... 145 7e-33
gi|84686203|ref|ZP_01014098.1| NAD-dependent formate dehydr... 145 8e-33
gi|50404222|gb|AAT76848.1| hydrogenase [uncultured Clostrid... 144 1e-32
gi|148259850|ref|YP_001233977.1| formate dehydrogenase, alp... 144 1e-32
gi|134096579|ref|YP_001101654.1| probable NAD dependent for... 144 2e-32
gi|106894049|ref|ZP_01361171.1| Ferredoxin:4Fe-4S ferredoxi... 143 3e-32
gi|147678981|ref|YP_001213196.1| hypothetical formate dehyd... 143 3e-32
gi|152981248|ref|YP_001355342.1| NAD-dependent formate dehy... 143 3e-32
gi|39933811|ref|NP_946087.1| NAD-dependent formate dehydrog... 143 3e-32
gi|116007466|ref|NP_001036429.1| CG17683-PD, isoform D [Dro... 143 4e-32
gi|85707196|ref|ZP_01038282.1| NAD-dependent formate dehydr... 143 4e-32
gi|89896715|ref|YP_520202.1| NADH dehydrogenase I chain G [... 143 4e-32
gi|18414657|ref|NP_567496.1| iron hydrogenase family protei... 143 4e-32
gi|15890285|ref|NP_355957.1| hypothetical protein AGR_L_347... 143 4e-32
gi|17938397|ref|NP_535186.1| formate dehydrogenase alpha su... 143 4e-32
gi|116254124|ref|YP_769962.1| putative NAD-dependent format... 143 4e-32
gi|148265659|ref|YP_001232365.1| molybdopterin oxidoreducta... 142 5e-32
gi|148266248|ref|YP_001232954.1| molybdopterin oxidoreducta... 142 5e-32
gi|116750140|ref|YP_846827.1| ferredoxin [Syntrophobacter f... 142 5e-32
gi|146341847|ref|YP_001206895.1| Formate dehydrogenase, alp... 142 6e-32
gi|149203818|ref|ZP_01880787.1| NAD-dependent formate dehyd... 142 6e-32
gi|110599310|ref|ZP_01387550.1| Ferredoxin:4Fe-4S ferredoxi... 142 6e-32
gi|116007468|ref|NP_001036430.1| CG17683-PC, isoform C [Dro... 142 6e-32
gi|14250944|emb|CAC39239.1| FdhA-II protein [Eubacterium ac... 142 7e-32
gi|109647342|ref|ZP_01371246.1| molybdopterin oxidoreductas... 142 8e-32
gi|116007464|ref|NP_001036428.1| CG17683-PA, isoform A [Dro... 142 8e-32
gi|145344368|ref|XP_001416706.1| predicted protein [Ostreoc... 142 9e-32
gi|29375957|ref|NP_815111.1| NAD-dependent formate dehydrog... 142 9e-32
gi|33600307|ref|NP_887867.1| NAD-dependent formate dehydrog... 142 1e-31
gi|33595781|ref|NP_883424.1| NAD-dependent formate dehydrog... 142 1e-31
gi|66803034|ref|XP_635360.1| hypothetical protein DDBDRAFT_... 141 1e-31
gi|86747850|ref|YP_484346.1| formate dehydrogenase, alpha s... 141 1e-31
gi|26988909|ref|NP_744334.1| formate dehydrogenase, alpha s... 141 2e-31
gi|114765412|ref|ZP_01444527.1| NAD-dependent formate dehyd... 140 2e-31
gi|14250943|emb|CAC39238.1| FdhB-II protein [Eubacterium ac... 140 2e-31
gi|78224215|ref|YP_385962.1| Fe(III) reductase, alpha subun... 140 2e-31
gi|148548759|ref|YP_001268861.1| formate dehydrogenase, alp... 140 2e-31
gi|146278885|ref|YP_001169044.1| formate dehydrogenase, alp... 140 2e-31
gi|78224539|ref|YP_386286.1| NADH dehydrogenase I, G subuni... 140 2e-31
gi|104780977|ref|YP_607475.1| formate dehydrogenase, alpha ... 140 2e-31
gi|147678982|ref|YP_001213197.1| hypothetical membrane prot... 140 2e-31
gi|86359438|ref|YP_471330.1| formate dehydrogenase, alpha s... 140 2e-31
gi|116056721|emb|CAL53010.1| putative polyamine oxidase (IS... 140 3e-31
gi|126463501|ref|YP_001044615.1| formate dehydrogenase, alp... 140 3e-31
gi|119859537|ref|ZP_01640951.1| formate dehydrogenase, alph... 140 3e-31
gi|115526636|ref|YP_783547.1| formate dehydrogenase, alpha ... 140 3e-31
gi|118029233|ref|ZP_01500694.1| formate dehydrogenase, alph... 140 4e-31
gi|91975103|ref|YP_567762.1| formate dehydrogenase, alpha s... 139 4e-31
gi|27378247|ref|NP_769776.1| formate dehydrogenase alpha su... 139 5e-31
gi|148254528|ref|YP_001239113.1| Formate dehydrogenase, alp... 139 5e-31
gi|11545455|gb|AAG37855.1|AF298190_5 NAD-dependent formate ... 139 5e-31
gi|126359641|ref|ZP_01716634.1| formate dehydrogenase, alph... 139 5e-31
gi|126665577|ref|ZP_01736559.1| formate dehydrogenase, alph... 139 6e-31
gi|77464661|ref|YP_354165.1| NAD-dependent formate dehydrog... 139 8e-31
gi|90426116|ref|YP_534486.1| formate dehydrogenase, alpha s... 138 9e-31
gi|114566560|ref|YP_753714.1| NADH dehydrogenase I chain G ... 138 9e-31
gi|116619258|ref|YP_821414.1| NADH-quinone oxidoreductase, ... 138 9e-31
gi|50404208|gb|AAT76841.1| hydrogenase [uncultured Clostrid... 138 1e-30
gi|94968337|ref|YP_590385.1| NADH-quinone oxidoreductase, c... 138 1e-30
gi|39995616|ref|NP_951567.1| Fe(III) reductase, alpha subun... 138 1e-30
gi|69936445|ref|ZP_00631271.1| Formate dehydrogenase, alpha... 138 1e-30
gi|71278181|ref|YP_270682.1| formate dehydrogenase, alpha s... 138 1e-30
gi|73540325|ref|YP_294845.1| Formate dehydrogenase, alpha s... 138 1e-30
gi|116750928|ref|YP_847615.1| formate dehydrogenase, alpha ... 138 1e-30
gi|50404206|gb|AAT76840.1| hydrogenase [uncultured Clostrid... 138 1e-30
gi|39995453|ref|NP_951404.1| NADH dehydrogenase I, G subuni... 137 2e-30
gi|150391790|ref|YP_001321839.1| molybdopterin oxidoreducta... 137 2e-30
gi|50404210|gb|AAT76842.1| hydrogenase [uncultured Clostrid... 137 2e-30
gi|152996296|ref|YP_001341131.1| formate dehydrogenase, alp... 137 2e-30
gi|150398095|ref|YP_001328562.1| formate dehydrogenase, alp... 137 3e-30
gi|91775073|ref|YP_544829.1| formate dehydrogenase, alpha s... 136 3e-30
gi|15966762|ref|NP_387115.1| PROBABLE NAD-DEPENDENT FORMATE... 136 3e-30
gi|99911789|ref|ZP_01318605.1| hypothetical protein Bpse1_0... 136 4e-30
gi|114571228|ref|YP_757908.1| formate dehydrogenase, alpha ... 136 5e-30
gi|145617419|ref|ZP_01773484.1| molybdopterin oxidoreductas... 135 5e-30
gi|114567346|ref|YP_754500.1| NADH dehydrogenase I chain G ... 135 6e-30
gi|67642933|ref|ZP_00441684.1| COG3383: Uncharacterized ana... 135 7e-30
gi|126438525|ref|YP_001059920.1| formate dehydrogenase, alp... 135 7e-30
gi|53720140|ref|YP_109126.1| NAD-dependent formate dehydrog... 135 8e-30
gi|100122106|ref|ZP_01327961.1| hypothetical protein BpseS_... 135 8e-30
gi|53724804|ref|YP_102259.1| formate dehydrogenase, alpha s... 135 8e-30
gi|134277066|ref|ZP_01763781.1| formate dehydrogenase, alph... 135 8e-30
gi|82538364|ref|ZP_00897357.1| hypothetical protein Bpse110... 135 9e-30
gi|100916214|ref|ZP_01344698.1| hypothetical protein Bmal10... 135 1e-29
gi|153814717|ref|ZP_01967385.1| hypothetical protein RUMTOR... 135 1e-29
gi|53804301|ref|YP_113849.1| formate dehydrogenase, alpha s... 135 1e-29
gi|118730159|ref|ZP_01578675.1| formate dehydrogenase, alph... 134 1e-29
gi|121609340|ref|YP_997147.1| formate dehydrogenase, alpha ... 134 1e-29
gi|91784828|ref|YP_560034.1| NAD-dependent formate dehydrog... 134 2e-29
gi|94309500|ref|YP_582710.1| formate dehydrogenase, alpha s... 134 2e-29
gi|116749582|ref|YP_846269.1| molybdopterin oxidoreductase ... 134 2e-29
gi|154502471|ref|ZP_02039531.1| hypothetical protein RUMGNA... 134 2e-29
gi|118043676|ref|ZP_01512404.1| formate dehydrogenase, alph... 134 3e-29
gi|83718922|ref|YP_442160.1| formate dehydrogenase, alpha s... 134 3e-29
gi|871456|emb|CAA61208.1| putative alpha subunit of formate... 134 3e-29
gi|87120635|ref|ZP_01076529.1| formate dehydrogenase, alpha... 133 3e-29
gi|115350949|ref|YP_772788.1| formate dehydrogenase, alpha ... 133 3e-29
gi|50545922|ref|XP_500499.1| hypothetical protein [Yarrowia... 133 3e-29
gi|153853057|ref|ZP_01994466.1| hypothetical protein DORLON... 133 4e-29
gi|114328598|ref|YP_745755.1| NAD-dependent formate dehydro... 132 5e-29
gi|134085726|ref|NP_001076880.1| hypothetical protein LOC51... 132 6e-29
gi|144897651|emb|CAM74515.1| formate dehydrogenase, alpha s... 132 7e-29
gi|84361165|ref|ZP_00985845.1| COG3383: Uncharacterized ana... 132 9e-29
gi|15810673|gb|AAL08586.1|AF299114_2 putative formate dehyd... 132 9e-29
gi|118720857|ref|ZP_01573378.1| formate dehydrogenase, alph... 132 1e-28
gi|119504735|ref|ZP_01626813.1| formate dehydrogenase alpha... 132 1e-28
gi|3724145|emb|CAA11235.1| NAD-dependent formate dehydrogen... 131 1e-28
gi|124895552|gb|EAY69432.1| hypothetical protein BDAG_02189... 131 1e-28
gi|113866669|ref|YP_725158.1| NAD-dependent formate dehydro... 131 1e-28
gi|134295063|ref|YP_001118798.1| formate dehydrogenase, alp... 131 2e-28
gi|154247407|ref|YP_001418365.1| formate dehydrogenase, alp... 131 2e-28
gi|116747481|ref|YP_844168.1| molybdopterin oxidoreductase ... 131 2e-28
gi|85858923|ref|YP_461125.1| formate dehydrogenase, iron-su... 131 2e-28
gi|14250938|emb|CAC39234.1| FdhA-I protein [Eubacterium aci... 131 2e-28
gi|51244534|ref|YP_064418.1| formate dehydrogenase, alpha c... 131 2e-28
gi|114566323|ref|YP_753477.1| NADH dehydrogenase I chain G ... 130 2e-28
gi|152990043|ref|YP_001355765.1| NADH-quinone oxidoreductas... 130 2e-28
gi|124268894|ref|YP_001022898.1| NAD-dependent formate dehy... 130 2e-28
gi|78065616|ref|YP_368385.1| Formate dehydrogenase, alpha s... 130 3e-28
gi|108744330|gb|ABG02415.1| FdsA [Xanthobacter flavus] 130 3e-28
gi|86359332|ref|YP_471224.1| NADH-ubiquinone oxidoreductase... 130 3e-28
gi|118701217|ref|ZP_01559281.1| formate dehydrogenase, alph... 130 3e-28
gi|107022109|ref|YP_620436.1| formate dehydrogenase, alpha ... 130 3e-28
gi|84357173|ref|ZP_00982001.1| COG3383: Uncharacterized ana... 130 3e-28
gi|124515810|gb|EAY57319.1| Anaerobic dehydrogenase [Leptos... 130 3e-28
gi|116750131|ref|YP_846818.1| molybdopterin oxidoreductase ... 130 3e-28
gi|154496907|ref|ZP_02035603.1| hypothetical protein BACCAP... 129 4e-28
gi|95928556|ref|ZP_01311303.1| molybdopterin oxidoreductase... 129 6e-28
gi|15679548|ref|NP_276665.1| formate dehydrogenase, alpha s... 129 7e-28
gi|106894050|ref|ZP_01361172.1| Ferredoxin:4Fe-4S ferredoxi... 128 9e-28
gi|28212003|ref|NP_782947.1| periplasmic [Fe] hydrogenase 1... 128 1e-27
gi|109645706|ref|ZP_01369626.1| ferredoxin [Desulfitobacter... 128 1e-27
gi|87198759|ref|YP_496016.1| formate dehydrogenase, alpha s... 127 2e-27
gi|89895362|ref|YP_518849.1| hypothetical protein DSY2616 [... 127 2e-27
gi|118049187|ref|ZP_01517738.1| formate dehydrogenase, alph... 127 2e-27
gi|84499617|ref|ZP_00997905.1| NAD-dependent formate dehydr... 127 2e-27
gi|153900628|ref|ZP_02021189.1| formate dehydrogenase, alph... 127 2e-27
gi|156453513|ref|ZP_02059871.1| formate dehydrogenase, alph... 127 2e-27
gi|145622321|ref|ZP_01778281.1| formate dehydrogenase, alph... 127 2e-27
gi|71278992|ref|YP_268786.1| formate dehydrogenase, alpha s... 127 2e-27
gi|89897072|ref|YP_520559.1| hypothetical protein DSY4326 [... 126 4e-27
gi|109648728|ref|ZP_01372627.1| hydrogenase large subunit-l... 126 4e-27
gi|15605931|ref|NP_213308.1| NADH dehydrogenase I chain G [... 125 9e-27
gi|56418994|ref|YP_146312.1| formate dehydrogenase chain A ... 125 9e-27
gi|89210579|ref|ZP_01188967.1| 4Fe-4S ferredoxin, iron-sulf... 125 1e-26
gi|5650750|emb|CAB51635.1| putative NADH-ubiquinone oxidore... 125 1e-26
gi|16263281|ref|NP_436074.1| NuoG2 NADH I CHAIN G 2 [Sinorh... 125 1e-26
gi|149909799|ref|ZP_01898450.1| NuoG2 NADH I CHAIN G 2 [Mo... 125 1e-26
gi|114705202|ref|ZP_01438110.1| probable nad-dependent form... 124 1e-26
gi|71995015|ref|NP_498092.4| Y54H5A.4 [Caenorhabditis elega... 124 1e-26
gi|34556903|ref|NP_906718.1| NADH dehydrogenase gamma subun... 124 2e-26
gi|121540851|ref|ZP_01672610.1| molybdopterin oxidoreductas... 124 2e-26
gi|89210772|ref|ZP_01189157.1| 4Fe-4S ferredoxin, iron-sulf... 124 2e-26
gi|91203920|emb|CAJ71573.1| similar to molybdopterin oxidor... 124 3e-26
gi|150375768|ref|YP_001312364.1| molybdopterin oxidoreducta... 123 3e-26
gi|77918447|ref|YP_356262.1| anaerobic dehydrogenase [Pelob... 123 4e-26
gi|110802004|ref|YP_699826.1| [Fe] hydrogenase [Clostridium... 123 4e-26
gi|121535135|ref|ZP_01666951.1| hydrogenase large subunit d... 123 4e-26
gi|28207555|gb|AAO32146.1| NAD-linked formate dehydrogenase... 122 5e-26
gi|118478818|ref|YP_895969.1| formate dehydrogenase, alpha ... 121 1e-25
gi|30263522|ref|NP_845899.1| molybdopterin oxidoreductase f... 121 1e-25
gi|65320849|ref|ZP_00393808.1| COG3383: Uncharacterized ana... 121 1e-25
gi|49481746|ref|YP_037653.1| formate dehydrogenase, alpha s... 121 1e-25
gi|46107184|ref|XP_380651.1| hypothetical protein FG00475.1... 121 1e-25
gi|23664244|gb|AAN39276.1| iron hydrogenase precursor [Neoc... 121 2e-25
gi|109671704|ref|ZP_01373952.1| ferredoxin [Campylobacter c... 121 2e-25
gi|52141962|ref|YP_084867.1| formate dehydrogenase, alpha s... 121 2e-25
gi|138894138|ref|YP_001124591.1| Formate dehydrogenase chai... 120 3e-25
gi|110800553|ref|YP_697264.1| [Fe] hydrogenase [Clostridium... 120 3e-25
gi|148381245|ref|YP_001255786.1| iron-dependent hydrogenase... 120 4e-25
gi|153938019|ref|YP_001392647.1| [Fe] hydrogenase [Clostrid... 120 4e-25
gi|153932223|ref|YP_001385620.1| [Fe] hydrogenase [Clostrid... 119 4e-25
gi|18311557|ref|NP_563491.1| probable hydrogenase [Clostrid... 119 4e-25
gi|153812810|ref|ZP_01965478.1| hypothetical protein RUMOBE... 119 5e-25
gi|46446199|ref|YP_007564.1| putative NADH-ubiquinone oxido... 119 6e-25
gi|47568933|ref|ZP_00239625.1| formate dehydrogenase, alpha... 119 6e-25
gi|42782638|ref|NP_979885.1| molybdopterin oxidoreductase f... 119 6e-25
gi|116754225|ref|YP_843343.1| formate dehydrogenase, alpha ... 118 9e-25
gi|78778017|ref|YP_394332.1| Ferredoxin [Thiomicrospira den... 118 1e-24
gi|114671181|ref|XP_511766.2| PREDICTED: nuclear prelamin A... 117 2e-24
gi|113867076|ref|YP_725565.1| NADH dehydrogenase chain G [R... 117 2e-24
gi|83643018|ref|YP_431453.1| probable hydrogen dehydrogenas... 117 2e-24
gi|110667103|ref|YP_656914.1| NADH:ubiquinone oxidoreductas... 117 2e-24
gi|119610197|gb|EAW89791.1| hCG30379, isoform CRA_a [Homo s... 117 2e-24
gi|114330931|ref|YP_747153.1| NADH-quinone oxidoreductase, ... 117 2e-24
gi|91776407|ref|YP_546163.1| NADH-quinone oxidoreductase, c... 117 2e-24
gi|94309878|ref|YP_583088.1| NADH-quinone oxidoreductase, c... 117 3e-24
gi|11465863|ref|NP_066412.1| NADH dehydrogenase subunit 11 ... 117 3e-24
gi|153938366|ref|YP_001392904.1| [Fe] hydrogenase [Clostrid... 117 3e-24
gi|119610198|gb|EAW89792.1| hCG30379, isoform CRA_b [Homo s... 116 3e-24
gi|148381490|ref|YP_001256031.1| iron-only hydrogenase [Clo... 116 4e-24
gi|30249731|ref|NP_841801.1| NADH dehydrogenase gamma subun... 116 4e-24
gi|109946839|ref|YP_664067.1| NADH dehydrogenase I chain G ... 116 4e-24
gi|14324457|dbj|BAB59385.1| formate hydrogenase [Thermoplas... 116 4e-24
gi|13541074|ref|NP_110762.1| Uncharacterized anaerobic dehy... 116 5e-24
gi|83746303|ref|ZP_00943356.1| NADH-quinone oxidoreductase ... 116 5e-24
gi|148285161|ref|YP_001249251.1| NADH dehydrogenase I chain... 116 5e-24
gi|53718853|ref|YP_107839.1| NADH dehydrogenase gamma subun... 116 5e-24
gi|53725813|ref|YP_103428.1| NADH dehydrogenase gamma subun... 116 5e-24
gi|76810119|ref|YP_332850.1| NADH dehydrogenase gamma subun... 116 5e-24
>gi|42527101|ref|NP_972199.1| Fe-hydrogenase [Treponema denticola ATCC 35405]
gi|41817525|gb|AAS12110.1| Fe-hydrogenase [Treponema denticola ATCC 35405]
Length = 596
Score = 1226 bits (3171), Expect = 0.0, Method: Composition-based stats.
Identities = 596/596 (100%), Positives = 596/596 (100%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT
Sbjct: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD
Sbjct: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
Query: 121 VLYEEQLEDQPWDKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGS 180
VLYEEQLEDQPWDKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGS
Sbjct: 121 VLYEEQLEDQPWDKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGS 180
Query: 181 RTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIG 240
RTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIG
Sbjct: 181 RTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIG 240
Query: 241 LDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCC 300
LDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCC
Sbjct: 241 LDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCC 300
Query: 301 PGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKS 360
PGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKS
Sbjct: 301 PGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKS 360
Query: 361 EIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGA 420
EIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGA
Sbjct: 361 EIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGA 420
Query: 421 TGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLA 480
TGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLA
Sbjct: 421 TGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLA 480
Query: 481 NTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSKVR 540
NTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSKVR
Sbjct: 481 NTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSKVR 540
Query: 541 YSHENECIKALYNDFFEKPNSHKAHSLLHTDHFIWEMPRSPKRDRKGYVINEKFQS 596
YSHENECIKALYNDFFEKPNSHKAHSLLHTDHFIWEMPRSPKRDRKGYVINEKFQS
Sbjct: 541 YSHENECIKALYNDFFEKPNSHKAHSLLHTDHFIWEMPRSPKRDRKGYVINEKFQS 596
>gi|153855001|ref|ZP_01996214.1| hypothetical protein DORLON_02220 [Dorea longicatena DSM 13814]
gi|149752498|gb|EDM62429.1| hypothetical protein DORLON_02220 [Dorea longicatena DSM 13814]
Length = 578
Score = 834 bits (2154), Expect = 0.0, Method: Composition-based stats.
Identities = 390/573 (68%), Positives = 470/573 (82%), Gaps = 1/573 (0%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
MVNLTID KI+ KEN TIMEAA GIPIPKLC+LKGINEIAACRVCVVELEGKEKLIT
Sbjct: 1 MVNLTIDGRKITVKENTTIMEAAAQNGIPIPKLCYLKGINEIAACRVCVVELEGKEKLIT 60
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
+CNN +EGMV++TNSPKVR RR TV++ILSQHDC+C C RSGNC+LQT+ANDLNI +
Sbjct: 61 SCNNVAKEGMVIHTNSPKVRRHRRTTVELILSQHDCECVTCSRSGNCSLQTVANDLNIIE 120
Query: 121 VLYEEQLEDQPWDKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGS 180
+ ++ ++E QPW+K FPLIRDS KCIKCMRC+QVC+K+QSL +W++EGTG+RTTINV+G
Sbjct: 121 IPFKMEIERQPWNKEFPLIRDSSKCIKCMRCVQVCEKVQSLGVWDVEGTGSRTTINVAGH 180
Query: 181 RTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIG 240
RTI +A C+LCGQCITHCPVGALR RDDTE W A+A+PDK+VV QVAPA+RTAWGE G
Sbjct: 181 RTIEEASCALCGQCITHCPVGALRARDDTEDVWDAIADPDKIVVAQVAPAVRTAWGEEFG 240
Query: 241 LDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCC 300
L K+A+V KI DALKR+G DY FDT FSADLTIMEE EF+ RF+ GELK++PMFTSCC
Sbjct: 241 LSDKEATVGKILDALKRMGVDYAFDTTFSADLTIMEEGTEFLHRFTAGELKERPMFTSCC 300
Query: 301 PGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKS 360
PGW+RFIKSQYPHLV LS+AKSP QMFGAVMK+YFAEK+G PE I++V++MPCVAKK
Sbjct: 301 PGWLRFIKSQYPHLVRQLSTAKSPQQMFGAVMKTYFAEKLGVSPEKIYTVSVMPCVAKKG 360
Query: 361 EIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGA 420
E +MELFY EYAGHD+D V+TTRE +M+KSAHI P+TL + + D+ D +GAG+IFGA
Sbjct: 361 EKEMELFYQEYAGHDIDAVITTRELTKMIKSAHISPDTLADIDSDRPMQDGTGAGVIFGA 420
Query: 421 TGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSS-QEESGIIEASFTLKENNLRIAVTSGL 479
TGGVMEAALRTAYY + G+N P DAFK VR + + GI EA+F + +R A SGL
Sbjct: 421 TGGVMEAALRTAYYLLKGENPPEDAFKAVRSTGFNQNQGIQEANFQIDNVTVRTAAVSGL 480
Query: 480 ANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSKV 539
N R L+D I GE HYDFVE+MACPGGCVGGGGQPIH+ ELA +RG LY +DKN+K
Sbjct: 481 GNARALLDRINKGEVHYDFVEVMACPGGCVGGGGQPIHDGRELAYERGQKLYSLDKNAKR 540
Query: 540 RYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
R+SHEN+ ++ +Y ++F KPNS K+H LLHT+H
Sbjct: 541 RFSHENQDVQKMYEEYFVKPNSPKSHMLLHTEH 573
>gi|139438951|ref|ZP_01772411.1| Hypothetical protein COLAER_01417 [Collinsella aerofaciens ATCC
25986]
gi|133775662|gb|EBA39482.1| Hypothetical protein COLAER_01417 [Collinsella aerofaciens ATCC
25986]
Length = 603
Score = 645 bits (1664), Expect = 0.0, Method: Composition-based stats.
Identities = 313/583 (53%), Positives = 408/583 (69%), Gaps = 9/583 (1%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
MV LTIDN ++ E+ TI++AA+SAGI IP LC+L+ +NEI CRVCVVE+EG ++L+
Sbjct: 20 MVKLTIDNCEVMVPEHTTILDAAKSAGIQIPTLCYLRDLNEIGGCRVCVVEVEGCDQLVA 79
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
ACNN V +GMVV+TNSPK R RR VQ++LSQHD +C CVRSGNC LQT+ANDL I
Sbjct: 80 ACNNYVLDGMVVHTNSPKAREARRTNVQLLLSQHDSRCTSCVRSGNCNLQTIANDLGIFY 139
Query: 121 VLYEEQLEDQPWDKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGS 180
+ YE+ L + WD +FP+IRD+ KCIKCMRCI+VC+ +Q L IW+L T + G
Sbjct: 140 LPYEQHLAREGWDFDFPIIRDNDKCIKCMRCIKVCESVQGLGIWDLTNRATHTAVGTRGR 199
Query: 181 RTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIG 240
I DC CGQCITHCP GALRERDDTE + A+A+PDK+V+VQ+APA+R+AWGE +G
Sbjct: 200 APIGKTDCVACGQCITHCPTGALRERDDTETVFDAIADPDKIVLVQIAPAVRSAWGEELG 259
Query: 241 LDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSK-----GELKDKPM 295
+ ++A+V ++ AL+R+G +YVFDT FSADLTIMEE E +ER K G+ + PM
Sbjct: 260 ISREEATVERLACALRRVGFEYVFDTDFSADLTIMEEGSELLERLGKAAKGEGDSRGWPM 319
Query: 296 FTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPC 355
FTSCCPGWVRF+K++YP V LS++KSP QMFGA+ K+Y+A+ +G +PE +F V++MPC
Sbjct: 320 FTSCCPGWVRFVKARYPEFVDRLSTSKSPQQMFGAIAKTYYAKVLGVEPERLFVVSVMPC 379
Query: 356 VAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAG 415
AKK+E + GE D+D LT RE VRM++++H+ +TL E D +GAG
Sbjct: 380 TAKKAECALPSMMGEDGAPDVDVALTVREMVRMIRASHVSVDTLVEEPLDTPLGFGTGAG 439
Query: 416 IIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAV 475
+IFGATGGVMEAA+R+AYY + GKN D F VR G EA + +R+AV
Sbjct: 440 VIFGATGGVMEAAVRSAYYLVTGKNPDADFFTDVRGL----EGWKEAVADIDGTKVRVAV 495
Query: 476 TSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDK 535
GL N RL+D+I G YDFVE+MACPGGCVGGGGQPIH+ ELA +RG L+ +D
Sbjct: 496 AHGLGNAARLLDAIRDGRVRYDFVEVMACPGGCVGGGGQPIHDGCELAAERGQVLWSLDA 555
Query: 536 NSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDHFIWEMP 578
+ +R+SHEN ++A Y +F P S A LLHTDH W MP
Sbjct: 556 KADIRFSHENPDVQACYREFLGAPLSPLAEELLHTDHHAWSMP 598
>gi|125972863|ref|YP_001036773.1| hydrogenase, Fe-only [Clostridium thermocellum ATCC 27405]
gi|125713088|gb|ABN51580.1| hydrogenase, Fe-only [Clostridium thermocellum ATCC 27405]
Length = 582
Score = 536 bits (1382), Expect = e-150, Method: Composition-based stats.
Identities = 280/579 (48%), Positives = 369/579 (63%), Gaps = 15/579 (2%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
MVN+TIDN KI N T++EAA+ A I IP LCFLK INE+ ACR+CVVE++G L
Sbjct: 3 MVNVTIDNCKIQVPANYTVLEAAKQANIDIPTLCFLKDINEVGACRMCVVEVKGARSLQA 62
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
AC V EG+ VYT +P VR R+ T+++ILS H+ KC CVRS NC LQ LA DLN++D
Sbjct: 63 ACVYPVSEGLEVYTQTPAVREARKVTLELILSNHEKKCLTCVRSENCELQRLAKDLNVKD 122
Query: 121 VLYEEQLEDQPWDKNFP-LIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSG 179
+ +E ++ + P D P ++RD KC+ C RC+ +C +Q++ ++ G RTT++ +
Sbjct: 123 IRFEGEMSNLPIDDLSPSVVRDPNKCVLCRRCVSMCKNVQTVGAIDVTERGFRTTVSTAF 182
Query: 180 SRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHI 239
++ +++ C CGQCI CPVGALRE+DD +K W A+ANP+ VVVQ APA+R A GE
Sbjct: 183 NKPLSEVPCVNCGQCINVCPVGALREKDDIDKVWEALANPELHVVVQTAPAVRVALGEEF 242
Query: 240 GLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSC 299
G+ + K+ AL R+G VFDT +ADLTIMEE E I R G P+ TSC
Sbjct: 243 GMPIGSRVTGKMVAALSRLGFKKVFDTDTAADLTIMEEGTELINRIKNG--GKLPLITSC 300
Query: 300 CPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKK 359
PGW++F + YP + +LSS KSP +MFGAV+KSY+A+K G P +F V+IMPC AKK
Sbjct: 301 SPGWIKFCEHNYPEFLDNLSSCKSPHEMFGAVLKSYYAQKNGIDPSKVFVVSIMPCTAKK 360
Query: 360 SEIDM-ELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIF 418
E EL Y D+D VLTTRE RM+K I +L + + D +ASGAG+IF
Sbjct: 361 FEAQRPELSSTGYP--DVDVVLTTRELARMIKETGIDFNSLPDKQFDDPMGEASGAGVIF 418
Query: 419 GATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSG 478
GATGGVMEAA+RT + GK P D K+ + GI EAS L L+ AV G
Sbjct: 419 GATGGVMEAAIRTVGELLSGK--PAD--KIEYTEVRGLDGIKEASIELDGFTLKAAVAHG 474
Query: 479 LANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESG-----ELAVKRGSNLYFI 533
L N R+L+D I+AGE Y F+EIMACPGGC+ GGGQPI S ++ +R +Y
Sbjct: 475 LGNARKLLDKIKAGEADYHFIEIMACPGGCINGGGQPIQPSSVRNWKDIRCERAKAIYEE 534
Query: 534 DKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
D++ +R SHEN IK LY +FF +P SHKAH LLHT +
Sbjct: 535 DESLPIRKSHENPKIKMLYEEFFGEPGSHKAHELLHTHY 573
>gi|4927278|gb|AAD33071.1| hydrogenase-1 [Clostridium thermocellum]
Length = 579
Score = 533 bits (1374), Expect = e-150, Method: Composition-based stats.
Identities = 279/579 (48%), Positives = 368/579 (63%), Gaps = 15/579 (2%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
MVN+TIDN KI N T++EAA+ A I IP LCFLK INE+ ACR+CVVE++G L
Sbjct: 1 MVNVTIDNCKIQVPANYTVLEAAKQANIDIPTLCFLKDINEVGACRMCVVEVKGARSLQA 60
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
AC V EG+ VYT +P VR R+ T+++ILS H+ KC CVRS NC LQ LA DLN++D
Sbjct: 61 ACVYPVSEGLEVYTQTPAVREARKVTLELILSNHEKKCLTCVRSENCELQRLAKDLNVKD 120
Query: 121 VLYEEQLEDQPWDKNFP-LIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSG 179
+ +E ++ + P D P ++RD KC+ C RC+ +C +Q++ ++ G RTT++ +
Sbjct: 121 IRFEGEMSNLPIDDLSPSVVRDPNKCVLCRRCVSMCKNVQTVGAIDVTERGFRTTVSTAF 180
Query: 180 SRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHI 239
++ +++ C CGQCI CPVGALRE+DD +K W A+ANP+ VVVQ APA+R A GE
Sbjct: 181 NKPLSEVPCVNCGQCINVCPVGALREKDDIDKVWEALANPELHVVVQTAPAVRVALGEEF 240
Query: 240 GLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSC 299
G+ + K+ AL R+G VFDT +ADLTIMEE E I R G P+ TSC
Sbjct: 241 GMPIGSRVTGKMVAALSRLGFKKVFDTDTAADLTIMEEGTELINRIKNG--GKLPLITSC 298
Query: 300 CPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKK 359
PGW++F + YP + +LSS KSP +MFGAV+KSY+A+K G P +F +IMPC AKK
Sbjct: 299 SPGWIKFCEHNYPEFLDNLSSCKSPHEMFGAVLKSYYAQKNGIDPSKVFVGSIMPCTAKK 358
Query: 360 SEIDM-ELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIF 418
E EL Y D+D VLTTRE RM+K I +L + + D +ASGAG+IF
Sbjct: 359 FEAQRPELSSTGYP--DVDVVLTTRELARMIKETGIDFNSLPDKQFDDPMGEASGAGVIF 416
Query: 419 GATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSG 478
GATGGVMEAA+RT + GK P D K+ + GI EAS L L+ AV G
Sbjct: 417 GATGGVMEAAIRTVGELLSGK--PAD--KIEYTEVRGLDGIKEASIELDGFTLKAAVAHG 472
Query: 479 LANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESG-----ELAVKRGSNLYFI 533
L N R+L+D I+AGE Y F+EIMACPGGC+ GGGQPI S ++ +R +Y
Sbjct: 473 LGNARKLLDKIKAGEADYHFIEIMACPGGCINGGGQPIQPSSVRNWKDIRCERAKAIYEE 532
Query: 534 DKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
D++ +R SHEN IK LY +FF +P SHKAH LLHT +
Sbjct: 533 DESLPIRKSHENPKIKMLYEEFFGEPGSHKAHELLHTHY 571
>gi|146296869|ref|YP_001180640.1| hydrogenase, Fe-only [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|145410445|gb|ABP67449.1| hydrogenase, Fe-only [Caldicellulosiruptor saccharolyticus DSM
8903]
Length = 579
Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats.
Identities = 271/579 (46%), Positives = 367/579 (63%), Gaps = 15/579 (2%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
MVN+TID K+ ++ T+++AA AG+ IP LC+LKGINEI ACR+CVVE++G L
Sbjct: 3 MVNITIDGKKLQVPKDYTVLQAAREAGVEIPTLCYLKGINEIGACRMCVVEIKGARSLQA 62
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
AC V EGM V TNS +VR R+ +++ILS HD C C+RSGNC LQ LA DLN++
Sbjct: 63 ACVYPVSEGMEVITNSERVRRARKVNLELILSNHDRNCLTCIRSGNCELQRLAEDLNVKQ 122
Query: 121 VLYEEQLEDQPWDKNFP-LIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSG 179
+ YE + +P D P ++RD KC+ C RCI VC +Q + + G RT ++ +
Sbjct: 123 IRYEGENIRRPLDDFSPSIVRDPNKCVLCKRCINVCRNVQEVGVINANYRGFRTVVSTAF 182
Query: 180 SRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHI 239
R++ D C++CGQCI CPVGALRE+D T+ W+A+A+ +K VVVQ APA+R A GE
Sbjct: 183 DRSLNDVACTMCGQCIQACPVGALREKDSTDIVWKALADKNKYVVVQTAPAVRVALGEEF 242
Query: 240 GLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSC 299
GL + K+ ALK +G D VFDT ADLTIMEE E I R G P+ TSC
Sbjct: 243 GLPIGTRVTGKMVTALKMLGFDKVFDTDTGADLTIMEEGTELINRIKNG--GKLPLITSC 300
Query: 300 CPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKK 359
PGW++F + +P + +LS+ KSP +MFGA++K+Y+A+K+G P ++F V+IMPC AKK
Sbjct: 301 SPGWIKFCEHYFPEFLDNLSTCKSPHEMFGAILKTYYAQKMGIDPANMFVVSIMPCTAKK 360
Query: 360 SEIDMELFYGEYAGH-DMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIF 418
E E +G+ D+D VLTTRE RM+K A I L + D DA+GAG+IF
Sbjct: 361 FEAQREELAA--SGYPDVDAVLTTRELARMIKEAGIDFVNLPDNHFDDPMGDATGAGVIF 418
Query: 419 GATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSG 478
G TGGVMEAALRT Y + GK P + ++ + E GI EA + ++ AV G
Sbjct: 419 GTTGGVMEAALRTVYEILTGK--PLENVEITQVRGLE--GIREAEIDVGTMKIKAAVAHG 474
Query: 479 LANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPI-----HESGELAVKRGSNLYFI 533
LAN ++L++ ++ GEK Y F+EIMACPGGC+ GGGQPI E ++A R S +Y
Sbjct: 475 LANAKKLLEMVKNGEKEYHFIEIMACPGGCIMGGGQPIVPAKVREKIDVAKLRASAIYDE 534
Query: 534 DKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
D++ +R SHEN IK LY +F PNS KAH +LHT +
Sbjct: 535 DRSLPIRKSHENPTIKKLYEEFLGHPNSEKAHHILHTHY 573
>gi|118725240|ref|ZP_01573883.1| hydrogenases, Fe-only [Clostridium cellulolyticum H10]
gi|118665472|gb|EAV72091.1| hydrogenases, Fe-only [Clostridium cellulolyticum H10]
Length = 582
Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats.
Identities = 272/577 (47%), Positives = 369/577 (63%), Gaps = 13/577 (2%)
Query: 2 VNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLITA 61
VN+TID K+ ++ +TI+EAA A I IP LCFLK INEI ACR+C+VE++G L +
Sbjct: 4 VNITIDGKKLQVEQGITILEAARQANIKIPTLCFLKDINEIGACRMCLVEIKGARALQAS 63
Query: 62 CNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQDV 121
C V EG+ +YT SP VR R+ T+++ILS HD KC CVRS NC LQ LA +LNI+D+
Sbjct: 64 CVYPVAEGLEIYTQSPDVREARKVTLELILSNHDKKCLTCVRSKNCELQNLAEELNIKDI 123
Query: 122 LYEEQLEDQPWDKNFP-LIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGS 180
+E D P D P ++RD KC+ C RC+ +C IQ++++ G ++TI+ +
Sbjct: 124 RFEGASIDLPLDDFSPSIVRDPNKCVLCKRCVSMCKNIQTVSVISAAERGFKSTISCAFD 183
Query: 181 RTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIG 240
R++ + C++CGQCI+ CPVGALRE+DDT+K W A+A+ + VVVQ APA+R A GE G
Sbjct: 184 RSLEEVPCTMCGQCISVCPVGALREKDDTDKVWSALADKELHVVVQTAPAVRVALGEEFG 243
Query: 241 LDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCC 300
L + K+ AL +G VFDT +ADLTIMEE E + R G P+ TSC
Sbjct: 244 LPIGTRVTGKMAAALNHLGFAKVFDTDTAADLTIMEEGTELLNRIKNG--GKLPVITSCS 301
Query: 301 PGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKS 360
PGW++F + YP + +LSS KSP +MFGAV+K+Y+AEK+G P+ IF V++MPC AKK
Sbjct: 302 PGWIKFCEHNYPEFLENLSSCKSPHEMFGAVLKTYYAEKMGIDPKKIFVVSVMPCTAKKF 361
Query: 361 EIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGA 420
E D+D V+TTRE RM+K A I L++ + D +A+GAG+IFGA
Sbjct: 362 EAQRPELSAT-GLPDVDVVITTRELARMIKEAGIDFNNLEDMDFDDPMGNATGAGVIFGA 420
Query: 421 TGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLA 480
TGGVMEAALRT + GK+ + VR GI EA+ + + ++ AV +GL
Sbjct: 421 TGGVMEAALRTVSEIVAGKSFEDIEYTAVRGI----EGIKEATVAIGDMKVKAAVANGLG 476
Query: 481 NTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESG-----ELAVKRGSNLYFIDK 535
N R+L+DSI+AGE YDFVEIMACPGGCV GGGQPI S +L +R +Y D
Sbjct: 477 NARKLLDSIKAGEAAYDFVEIMACPGGCVNGGGQPIQPSSVRSWTDLRTERAKAIYEEDV 536
Query: 536 NSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
+ +R SHEN IK +Y+ +F +P SHKAH +LHT +
Sbjct: 537 SLPIRKSHENPVIKEMYDKYFGEPGSHKAHEILHTHY 573
>gi|154498755|ref|ZP_02037133.1| hypothetical protein BACCAP_02746 [Bacteroides capillosus ATCC
29799]
gi|150272145|gb|EDM99349.1| hypothetical protein BACCAP_02746 [Bacteroides capillosus ATCC
29799]
Length = 584
Score = 514 bits (1324), Expect = e-144, Method: Composition-based stats.
Identities = 266/578 (46%), Positives = 353/578 (61%), Gaps = 13/578 (2%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
MVNL IDNI +S T++EAA +AGI IP LCFLK INEI ACR+CVVE++G + L+
Sbjct: 5 MVNLKIDNIPVSVPAGTTVLEAARNAGIKIPSLCFLKEINEIGACRICVVEVKGAKSLVA 64
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
+C V EGM V+TN+ KVR R+ T+++ILS H C C RSG C LQ LA DL I
Sbjct: 65 SCVYPVSEGMEVFTNTEKVRHSRQLTLELILSNHRMDCLTCSRSGRCELQDLARDLGIDA 124
Query: 121 VLY-EEQLEDQPWDKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSG 179
V Y + L Q D LIRD+ KC+ C RC VC K Q + + G T + +
Sbjct: 125 VRYAADNLPPQIEDSAPHLIRDNSKCVLCRRCTAVCRKSQEVGVIGCNDRGFATHVGCAF 184
Query: 180 SRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHI 239
R + + DC CGQCI CP GAL+E+DDT K W A+ +P K VVV AP+IR GE
Sbjct: 185 DRDLNEVDCVSCGQCIVACPTGALQEKDDTAKVWAALNDPTKHVVVGPAPSIRVTLGECF 244
Query: 240 GLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSC 299
G+ + K+ AL+R+G D VFD +AD TIMEE EF+ R G P+ TSC
Sbjct: 245 GMPIGTNVEGKMVTALRRLGFDKVFDVDNAADFTIMEEGTEFLHRLQNG--GTLPLITSC 302
Query: 300 CPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKK 359
PGW+RF + YP +V +LSS KSP QMFG ++K+Y+AEK+G P DIF V+IMPC AKK
Sbjct: 303 SPGWIRFCEQHYPDMVPNLSSCKSPQQMFGTLVKTYYAEKMGINPRDIFVVSIMPCTAKK 362
Query: 360 SEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFG 419
E+ E ++ +D LTTRE RM+ A +L + L + E D++ ++GA IFG
Sbjct: 363 YEVRREEMR-QHGWLPVDVSLTTRELGRMITRAGLLFQNLPDGEFDEMLGVSTGAATIFG 421
Query: 420 ATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGL 479
A+GGVMEAALRT + P F VR +GI EAS+ L +R+ VTSGL
Sbjct: 422 ASGGVMEAALRTVVEIVTKGEMKPLEFTEVRGM----TGIKEASYDLPGKTVRVCVTSGL 477
Query: 480 ANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESG-----ELAVKRGSNLYFID 534
AN ++++D +++GE YDF+EIMACPGGC+ GGGQPI + ++ R LY D
Sbjct: 478 ANAKKVLDGVKSGEMQYDFIEIMACPGGCINGGGQPIQHADVRNWTDIRSLRAKALYTQD 537
Query: 535 KNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
+ R SHEN ++ +Y ++ +P H+AH LLHT +
Sbjct: 538 EGMTYRRSHENPIVQQVYKEYLGEPGGHRAHELLHTTY 575
>gi|20807375|ref|NP_622546.1| NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit
(chain G) [Thermoanaerobacter tengcongensis MB4]
gi|20515894|gb|AAM24150.1| NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit
(chain G) [Thermoanaerobacter tengcongensis MB4]
Length = 581
Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats.
Identities = 266/575 (46%), Positives = 361/575 (62%), Gaps = 11/575 (1%)
Query: 2 VNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLITA 61
V +TID I + T++EAA+ AGI IP LC+LK IN+I ACR+C+VE+EG L T+
Sbjct: 4 VRVTIDGITVEVPSYYTVLEAAKEAGIDIPTLCYLKEINQIGACRICLVEIEGVRNLQTS 63
Query: 62 CNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQDV 121
C V +GM VYTN+PK+R RR +++ILS HD C CVRS NC LQ LA L ++++
Sbjct: 64 CTYPVFDGMKVYTNTPKIREARRLNLELILSNHDRNCLTCVRSTNCELQALAKRLGVEEI 123
Query: 122 LYEEQLEDQPWDKNFP-LIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGS 180
+E + P D P ++RD KC+ C RC+ VC ++Q++ + G +T + S
Sbjct: 124 RFEGENIKYPIDDASPAVVRDPNKCVLCRRCVAVCSEVQNVFAIGMVNRGFKTMVAPSFG 183
Query: 181 RTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIG 240
R++ D+ C CGQCI CPVGA+ E+D T++ + A+A+ K VV Q APA+R A GE G
Sbjct: 184 RSLKDSPCISCGQCIMVCPVGAIYEKDHTKRVYEALADDKKYVVAQTAPAVRVALGEEFG 243
Query: 241 LDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCC 300
+ + K+ AL+R+G D VFDT F+ADLTIMEE E +ER G PM TSC
Sbjct: 244 MPVGTIVTGKMAAALRRMGFDAVFDTNFAADLTIMEEGSELLERIKHG--GKLPMITSCS 301
Query: 301 PGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKS 360
PGW+ F + YP + +LS+ KSP M GA++KSY+AEK G P+DIF V+IMPC AKK
Sbjct: 302 PGWIAFCEKYYPEFIDNLSTCKSPHMMMGALVKSYYAEKKGLDPKDIFVVSIMPCTAKKL 361
Query: 361 EIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGA 420
EI+ E D+D VLTTRE RM+K I LK+ E D+ ++GAG IFGA
Sbjct: 362 EIEREEMI-RNGMKDVDAVLTTRELARMIKEMGIDFVNLKDEEFDEPLGMSTGAGAIFGA 420
Query: 421 TGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLA 480
TGGVMEAALRT + G++ F+ VR G+ EA+ T+ +++IA+ +G
Sbjct: 421 TGGVMEAALRTVAEIVEGRDIGKIDFEEVRGL----EGVREATITIDGMDIKIAIANGTG 476
Query: 481 NTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGEL-AVK--RGSNLYFIDKNS 537
N ++L+D ++AGE Y F+E+M CPGGC+ GGGQPIH E+ VK R +Y IDKN
Sbjct: 477 NAKKLLDKVKAGEVEYHFIEVMGCPGGCIMGGGQPIHNPNEMEEVKKLRAKAIYEIDKNL 536
Query: 538 KVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
+R SHEN IK LY +F P S K+H LLHT +
Sbjct: 537 PIRKSHENPAIKRLYEEFLGYPLSEKSHELLHTHY 571
>gi|14250935|emb|CAC39231.1| HymC protein [Eubacterium acidaminophilum]
Length = 578
Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats.
Identities = 258/578 (44%), Positives = 353/578 (61%), Gaps = 12/578 (2%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
MVN+TID +++ N T+++AA GI IP LC+LK IN+ ACR+C+VE+EG L T
Sbjct: 1 MVNITIDGRQVTVPANSTVLDAARDMGINIPTLCYLKDINKTGACRMCLVEVEGIRNLQT 60
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
AC V +G+VV TN+ +VR RR +Q+ILS H C C R+G+C LQ L +D+ + +
Sbjct: 61 ACTFPVRDGLVVKTNTKRVRDARRDNLQLILSNHHRDCLSCFRNGSCELQALCDDMGLSE 120
Query: 121 VLYEEQLEDQPWDK-NFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSG 179
+ +E E +P D + ++RD KCI C RC+ VC+K+Q + I G T + +
Sbjct: 121 LDFEAPKELKPVDMLSHSIVRDPNKCILCGRCVAVCNKVQEVGILAFTNRGVETEVAPAF 180
Query: 180 SRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHI 239
+ ++ADA C CGQC+ CPV ALRE+ D EK W + + K VVVQVAPA+R A GE
Sbjct: 181 ATSMADAPCIYCGQCVNVCPVAALREKTDIEKVWEVLEDETKHVVVQVAPAVRAALGEMF 240
Query: 240 GLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSC 299
G + K+F ALK +G VFDT F+ADLTIMEE E + R G PM TSC
Sbjct: 241 GNPIGTRVTGKMFTALKMLGFQKVFDTNFAADLTIMEEGTELLGRIKNG--GTLPMITSC 298
Query: 300 CPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKK 359
PGW+R+++ YP L+ H+SS KSP QM GAV+KSY+AEK PE++ V++MPC+AKK
Sbjct: 299 SPGWIRYVEHFYPELLDHVSSCKSPQQMMGAVLKSYYAEKNNIAPENMIVVSVMPCIAKK 358
Query: 360 SEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFG 419
+E E + D+D VLTTRE +M+K A I L+++ PD+ F D +GA +IFG
Sbjct: 359 TESAKEEMKNVHGTRDVDIVLTTRELGKMIKEARIEFNDLQDSNPDEFFGDYTGAAVIFG 418
Query: 420 ATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGL 479
ATGGVMEAA+RT + G+ + VR GI EA+ + + +++AV G
Sbjct: 419 ATGGVMEAAIRTVADIVSGQELEDIEYTAVRGL----EGIKEAAVKIGDLEVKVAVAHGT 474
Query: 480 ANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQP-----IHESGELAVKRGSNLYFID 534
AN +L+D + G+ Y F+EIM C GGCV GGGQP E + ++R LY D
Sbjct: 475 ANAGKLMDLVRDGKADYHFIEIMGCSGGCVTGGGQPHVDSRTKEKVNVKLERAKALYTED 534
Query: 535 KNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
K R SH NE +K LY ++ KPN HKAH LLHT +
Sbjct: 535 KLRDKRKSHHNESVKRLYEEYLGKPNGHKAHELLHTHY 572
>gi|83590553|ref|YP_430562.1| Iron hydrogenase, small subunit [Moorella thermoacetica ATCC 39073]
gi|83573467|gb|ABC20019.1| Iron hydrogenase, small subunit [Moorella thermoacetica ATCC 39073]
Length = 573
Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats.
Identities = 276/574 (48%), Positives = 372/574 (64%), Gaps = 13/574 (2%)
Query: 2 VNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLITA 61
V LTIDNI + + TI++AAE AGI IP LC+L+GINEI ACRVCVVE+EG L+ +
Sbjct: 4 VKLTIDNIPVEVEAGTTILKAAEEAGIHIPTLCYLEGINEIGACRVCVVEVEGARNLMAS 63
Query: 62 CNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQDV 121
C V EGMVV TNSP+VR+ RR V+++LS H+ +C C+R+ NC LQ+LA L I+ V
Sbjct: 64 CVAPVAEGMVVKTNSPRVRMARRLNVELLLSNHEMECPTCIRNLNCELQSLARGLGIRQV 123
Query: 122 LYEEQLEDQPWDKNFP-LIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGS 180
++ + + P D + P L+R+ KCI C RC+ VC+K+Q + G G T I +
Sbjct: 124 RFKGKKSEHPVDDSTPALVREPDKCILCRRCVAVCEKVQGVMAIAPLGRGFDTVIAPAFQ 183
Query: 181 RTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIG 240
+ D C CGQC CPVGAL E+D T + W A+A+P+K VVVQ APA R + G+ G
Sbjct: 184 EKLVDIACVECGQCTLVCPVGALYEKDYTSEVWAALADPEKFVVVQTAPATRVSIGQEFG 243
Query: 241 LDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSK-GELKDKPMFTSC 299
L + ++ AL+R+G D VFDT FSADLTIMEE EFIERF+K G L P+ TSC
Sbjct: 244 LAPGSINTGQMVAALRRLGFDRVFDTDFSADLTIMEEGSEFIERFTKDGPL---PLITSC 300
Query: 300 CPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKK 359
PGW++F++ YP L+ ++S+ KSP QMFGAV K+Y+A K G P + V+IMPC AKK
Sbjct: 301 SPGWIKFMEHFYPELIPNVSTCKSPQQMFGAVAKTYYARKAGVDPARMVVVSIMPCTAKK 360
Query: 360 SEIDM-ELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIF 418
E E+ Y D+D VLTTRE RM++ A I + L E + D +++GAG+IF
Sbjct: 361 FECQRPEMRDSGY--QDVDYVLTTRELARMIREAGIDFKNLPEEQYDDPLGESTGAGVIF 418
Query: 419 GATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSG 478
GATGGVMEAALRTAY I G+ P F +R GI EA+ +K +R+AV
Sbjct: 419 GATGGVMEAALRTAYELITGETLPALDFYDIRGL----KGIKEATVDIKGTKVRVAVAHS 474
Query: 479 LANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSK 538
L + R+L++ ++AGE+ Y F+EIM CPGGC+GGGGQPI + E+ +R +Y +D
Sbjct: 475 LGHARQLLERVKAGEQ-YHFIEIMCCPGGCIGGGGQPIPTNTEIREQRIKGIYQVDMEMP 533
Query: 539 VRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
+R SHEN ++ALY +F KP S K+H LLHT++
Sbjct: 534 IRKSHENPSVQALYREFLGKPLSEKSHHLLHTEY 567
>gi|76795773|ref|ZP_00778144.1| Ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding:Iron hydrogenase,
small subunit:Hydrogenase large subunit, C-terminal
[Thermoanaerobacter ethanolicus ATCC 33223]
gi|76588758|gb|EAO65159.1| Ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding:Iron hydrogenase,
small subunit:Hydrogenase large subunit, C-terminal
[Thermoanaerobacter ethanolicus ATCC 33223]
Length = 581
Score = 494 bits (1271), Expect = e-138, Method: Composition-based stats.
Identities = 255/576 (44%), Positives = 359/576 (62%), Gaps = 13/576 (2%)
Query: 2 VNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLITA 61
V +TID I + + T++EAA+ AGI IP LC+LK IN+I ACR+CVVE+EG L T+
Sbjct: 4 VRVTIDGITVEVPSHYTVLEAAKEAGIDIPTLCYLKEINQIGACRICVVEIEGVRNLQTS 63
Query: 62 CNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQDV 121
C V +GM VYTN+ K+R R+ +++ILS HD C C+R+ NC LQ+L+ L + ++
Sbjct: 64 CTYPVFDGMKVYTNTAKIREARKLNLELILSNHDRSCLTCIRNTNCELQSLSKKLGVNEI 123
Query: 122 LYEEQLEDQPWDKNFP-LIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGS 180
+E + D P ++RD KC+ C RC+ VC ++Q++ + G +T + S
Sbjct: 124 RFEGENIKYSIDNASPAIVRDPNKCVLCRRCVAVCSEVQNVFAIGMVNRGFKTMVAPSFG 183
Query: 181 RTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIG 240
R++ D+ C CGQCI CPVGA+ E+D T++ + A+A+ K VV Q APA+R A GE G
Sbjct: 184 RSLKDSPCISCGQCIEVCPVGAIYEKDHTKRVYEALADEKKYVVAQTAPAVRVALGEEFG 243
Query: 241 LDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCC 300
+ + K+ ALKR+G D VFDT F+ADLTIMEE E +ER G PM TSC
Sbjct: 244 MPIGSIVTGKMVAALKRMGFDAVFDTDFAADLTIMEEGSELLERLKNG--GKLPMITSCS 301
Query: 301 PGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKS 360
PGW+ F + YP + +LS+ KSP M GA++KSY+AEK G PEDI+ V+IMPC AKK
Sbjct: 302 PGWIAFCEKYYPEFIDNLSTCKSPHMMMGALVKSYYAEKKGLNPEDIYIVSIMPCTAKKL 361
Query: 361 EIDMELFYGEYAG-HDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFG 419
EI+ ++ G D+D VLTTRE RM+K I L + E D+ ++GA +IFG
Sbjct: 362 EIERPEM--QHNGIKDVDAVLTTRELARMIKEMGIDFVNLPDEEYDEPLGMSTGAAVIFG 419
Query: 420 ATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGL 479
ATGGVMEAALRT + GK+ ++ VR G+ EA+ + ++++A+ +G
Sbjct: 420 ATGGVMEAALRTVADIVEGKDLDKFDYEEVRGL----EGVREATIRIDGKDIKVAIANGT 475
Query: 480 ANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGEL-AVK--RGSNLYFIDKN 536
N ++L+D ++AGE Y F+E+M CPGGC+ GGGQPIH E+ VK R +Y DKN
Sbjct: 476 GNAKKLLDKVKAGEVEYHFIEVMGCPGGCIMGGGQPIHNPNEMEKVKELRAKAIYEADKN 535
Query: 537 SKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
+R SH+N I+ LY +F P S K+H LLHT +
Sbjct: 536 LPIRKSHKNPAIQKLYEEFLGSPLSEKSHHLLHTHY 571
>gi|106887714|ref|ZP_01355000.1| Ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding:Iron hydrogenase,
small subunit:Hydrogenase large subunit-like
[Clostridium phytofermentans ISDg]
gi|106764777|gb|EAT21570.1| Ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding:Iron hydrogenase,
small subunit:Hydrogenase large subunit-like
[Clostridium phytofermentans ISDg]
Length = 582
Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats.
Identities = 257/580 (44%), Positives = 356/580 (61%), Gaps = 17/580 (2%)
Query: 2 VNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLITA 61
+NL I+ + +SA TI+EAA A I IP LC+LK INEI ACR+CVVE++G L+ +
Sbjct: 4 INLKINGMDVSAPAGSTILEAARLAHIEIPTLCYLKEINEIGACRICVVEVKGARSLVAS 63
Query: 62 CNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD- 120
C + EGM V+TN+PKV R++T+Q+ILS HD +C CVRSG+C LQ L +L + D
Sbjct: 64 CVYPINEGMEVFTNTPKVLKSRKKTLQLILSNHDRRCLSCVRSGDCELQKLCKELGVDDE 123
Query: 121 VLYEEQLEDQPWDKNFP-LIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSG 179
LY+ + D+ ++RD+ KCI C RC VC Q + + G +T I +
Sbjct: 124 ALYDGEKGLYELDETAAHMVRDNNKCILCRRCTAVCSMTQGIGVIGANERGFKTNIGSAF 183
Query: 180 SRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHI 239
+ + C CGQCI CP GAL E+D + A+A+P+K V VQ APA+R GE
Sbjct: 184 EMGLGETSCVSCGQCIAVCPTGALYEKDSIDAVLEAIADPEKFVFVQTAPAVRAGLGEAF 243
Query: 240 GLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSC 299
GL + K+ AL+RIG D VFDT FSADLTIMEEA EF++R G + P+ TSC
Sbjct: 244 GLPIGTNVEGKMVAALRRIGFDKVFDTNFSADLTIMEEATEFLDRVQNGGV--LPLITSC 301
Query: 300 CPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKK 359
PGW+++ + +P + +LSS KSP QMFGA+ K+Y+AEK+G P + SV+IMPC AKK
Sbjct: 302 SPGWIKYCEHYFPDMTENLSSCKSPQQMFGAIAKTYYAEKLGIDPAKMVSVSIMPCTAKK 361
Query: 360 SEIDMELFYGEYAG-HDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIF 418
E+ + AG D+D LT REF R++ + +L + + D ++GA +IF
Sbjct: 362 FELGRD--DQSAAGVPDVDYSLTVREFARLIDKVGLKFLSLPDEQYDNPLGISTGAAVIF 419
Query: 419 GATGGVMEAALRTAYYAIMGKNC-PPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTS 477
GATGGVMEAALRTA + + G+N P F VR GI EA+F + ++ +AV S
Sbjct: 420 GATGGVMEAALRTAVWKLTGENSDSPIEFNEVRGV----QGIKEATFQVAGMDVNVAVAS 475
Query: 478 GLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQP-----IHESGELAVKRGSNLYF 532
GL+N R L++ +++GE +Y F+EIM CPGGCV GGGQP + ++ R LY
Sbjct: 476 GLSNARELLEKVKSGEANYHFIEIMGCPGGCVNGGGQPQVPASVRNFTDIRALRAKVLYD 535
Query: 533 IDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
D + +R SHENE +K +Y++F P SHKAH +LHT +
Sbjct: 536 SDAANPLRMSHENEAVKMVYDEFLGAPGSHKAHDILHTTY 575
>gi|118725455|ref|ZP_01574095.1| hydrogenases, Fe-only [Clostridium cellulolyticum H10]
gi|118665115|gb|EAV71737.1| hydrogenases, Fe-only [Clostridium cellulolyticum H10]
Length = 574
Score = 487 bits (1254), Expect = e-136, Method: Composition-based stats.
Identities = 257/576 (44%), Positives = 346/576 (60%), Gaps = 11/576 (1%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
MVNL ID I+ +N TI+EAA+ I IP LCF+KGINE +CRVCVVE+EG L
Sbjct: 3 MVNLKIDGFDITVPKNTTILEAAKKLNIDIPTLCFMKGINEPGSCRVCVVEVEGWRGLHP 62
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
AC V EG+VV T S VR R+ +++I++ H+ +C C R+ C LQTL ND I
Sbjct: 63 ACATKVFEGIVVKTASSAVREARKNILELIMANHNRECLSCPRNLKCELQTLCNDNGIDT 122
Query: 121 VLYEEQLEDQPWDKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGS 180
+ YE +++ D + P++RD KC+ C RC+ VC KIQ ++ + GA T+ +
Sbjct: 123 IPYEGKVDKGCLDTSGPIVRDPNKCVLCGRCVSVCSKIQDVSAIDFAFRGANMTVTTAYE 182
Query: 181 RTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIG 240
+A +C CGQCI CPVGAL+ERDDTEK W+A+ NPD VVVQ APA+R A GE G
Sbjct: 183 EGLASQECINCGQCIKICPVGALQERDDTEKVWKALENPDLHVVVQTAPAVRVALGEEFG 242
Query: 241 LDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCC 300
K+ AL+R+G D VFDT FSADLTI+EE E I R G P+ TSC
Sbjct: 243 FAPGTNVEGKMVAALRRLGFDKVFDTNFSADLTIIEEGNELINRIQNG--GKLPLITSCS 300
Query: 301 PGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKS 360
PGW+++ + Y + +LSS KSP QMFGA+ KSY+ K P +F V++MPC AKK
Sbjct: 301 PGWIKYCEHNYHDFIENLSSCKSPQQMFGAIAKSYYPTKADVDPRKVFVVSVMPCTAKKY 360
Query: 361 EIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGA 420
E D E + D+D V+TTRE +M++ A I E L++++ D + SGAG IFG
Sbjct: 361 EADREEMSVD-GLKDIDAVITTRELAKMIRQAGIKFEELEDSKQDSILGTYSGAGTIFGN 419
Query: 421 TGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLA 480
TGGVMEAALRT + GK+ + VR GI EA+ + +++AV +G
Sbjct: 420 TGGVMEAALRTVADKLTGKSLDCIEYTAVRGL----DGIKEATVNVAGMEIKVAVANGTG 475
Query: 481 NTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPI----HESGELAVKRGSNLYFIDKN 536
N +L+D I AGE +Y F+E+M C GGC+ GGGQPI + ++ R LY ID +
Sbjct: 476 NASKLLDKIRAGEANYHFIEVMGCEGGCINGGGQPIIKDKSTTDDVKAARIKGLYNIDVS 535
Query: 537 SKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
+ R SHEN I+ LY ++ + HKAH LLHT +
Sbjct: 536 CEKRKSHENPKIQKLYAEYLGEAGGHKAHKLLHTHY 571
>gi|89211311|ref|ZP_01189682.1| Ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding:Iron hydrogenase,
small subunit:Hydrogenase large subunit, C-terminal
[Halothermothrix orenii H 168]
gi|89159099|gb|EAR78776.1| Ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding:Iron hydrogenase,
small subunit:Hydrogenase large subunit, C-terminal
[Halothermothrix orenii H 168]
Length = 578
Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats.
Identities = 265/575 (46%), Positives = 356/575 (61%), Gaps = 16/575 (2%)
Query: 2 VNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLITA 61
VN+T+D ++ ++ TI+E A AGI IP LC+L+ INEI +CRVCVVE+ GK + A
Sbjct: 5 VNITLDGKSLTVDKDKTILEVAREAGIKIPTLCYLEEINEIGSCRVCVVEVNGK--IQPA 62
Query: 62 CNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQDV 121
C V EG+ + T SP++R RR ++++I+S H +C C R+GNC LQ LA D I ++
Sbjct: 63 CVTPVSEGLEITTTSPRIREARRISLELIISDHPMECLTCSRNGNCELQRLAEDFGISEI 122
Query: 122 LYE-EQLEDQPWDKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGS 180
YE EQ +P + ++RD KCI C RC+ VC+++Q + G T I +
Sbjct: 123 TYEGEQSHFEPDLSSPSIVRDPDKCILCRRCVSVCEQVQGVAALTPNERGFSTIITPAFG 182
Query: 181 RTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIG 240
+ + + C+ CGQCI CPVGAL E+DDTEK W A+ANPDK VVVQ APA+R + GE G
Sbjct: 183 QKLGEIACANCGQCINACPVGALSEKDDTEKVWEALANPDKHVVVQTAPAVRVSIGEVFG 242
Query: 241 LDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCC 300
+ K+ L+R+G D VFDT F+ADLTIMEE +E IER E P+ TSC
Sbjct: 243 MKPGSLVTGKLMAGLRRLGFDKVFDTNFTADLTIMEEGHELIERLKNNE--RLPLITSCS 300
Query: 301 PGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKS 360
PGW++FI+ YP + H+SS KSP QMFGA+ K+Y+ E G PED+F V++MPC AKK
Sbjct: 301 PGWIKFIEHFYPSYLEHISSCKSPQQMFGALAKTYYPENNGIDPEDVFVVSVMPCTAKKF 360
Query: 361 EIDMELFYGEYAGH-DMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFG 419
EI + +G+ D+D VLTTRE +M K A I L + E DK ++GAG IFG
Sbjct: 361 EITRPGM--DSSGYQDVDVVLTTRELAKMFKQAGIDFVNLPDEEYDKPLGISTGAGTIFG 418
Query: 420 ATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGL 479
TGGVMEAALRTAY + G+ P F+ VR GI E + +++AV GL
Sbjct: 419 TTGGVMEAALRTAYEVLTGEELPGLEFEDVRGL----EGIKECEIEINGQKIKVAVAHGL 474
Query: 480 ANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSKV 539
+N +++ +I+ Y F+EIMACPGGCVGGGGQP + E R LY DK ++
Sbjct: 475 SNAHKVLQNID----DYHFIEIMACPGGCVGGGGQPYPTNEETIRLRAQGLYRDDKEHQI 530
Query: 540 RYSHENECIKALYNDFFEKPNSHKAHSLLHTDHFI 574
R SHEN +K LY +F KP SHK+H LLHT + +
Sbjct: 531 RKSHENPVVKKLYEEFLGKPLSHKSHELLHTGYVV 565
>gi|153814131|ref|ZP_01966799.1| hypothetical protein RUMTOR_00340 [Ruminococcus torques ATCC 27756]
gi|145848527|gb|EDK25445.1| hypothetical protein RUMTOR_00340 [Ruminococcus torques ATCC 27756]
Length = 595
Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats.
Identities = 264/581 (45%), Positives = 358/581 (61%), Gaps = 20/581 (3%)
Query: 2 VNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLITA 61
VNL I+ + ++A TI+EAA++AGI IP LC+LK INEI ACR+CVVE++G L+ +
Sbjct: 19 VNLKINGLNVTAPAGSTILEAAQAAGIKIPTLCYLKEINEIGACRMCVVEVKGARNLVAS 78
Query: 62 CNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQDV 121
C + V EGM V TN+PK+ RRRT++++LS HD KC CVRSG C LQ L +L + D
Sbjct: 79 CVHPVAEGMEVQTNTPKLLDSRRRTLELLLSNHDKKCLSCVRSGQCELQELCQELGVTDE 138
Query: 122 LY-EEQLEDQPWDKN-FPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSG 179
Y E + D++ ++RD+ KCI C RC VC+K+QS+ + G T I
Sbjct: 139 NYFEGETTHYELDESAVHMVRDNNKCILCRRCSAVCEKVQSVGVIGPNNRGFATFIGSPF 198
Query: 180 SRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHI 239
+ D C CGQCI CP GAL E+ + + A+A+ K VVVQ AP++R A GE
Sbjct: 199 EMGLGDTSCVGCGQCIAACPTGALYEKSNIDDVLAAIADETKHVVVQPAPSVRAALGEEF 258
Query: 240 GLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERF-SKGELKDKPMFTS 298
G + K+ AL+RIG D VFDT FSADLTIMEEA+EF++R +KG L P+ TS
Sbjct: 259 GYPMGTDVEGKMAAALRRIGFDKVFDTNFSADLTIMEEAHEFLDRVKNKGVL---PLMTS 315
Query: 299 CCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAK 358
C PGWV++ + YP + HLSS KSP QMFGA+ K+Y+AEK+ PEDI V++MPC AK
Sbjct: 316 CSPGWVKYCEHYYPDQLDHLSSCKSPQQMFGAITKTYYAEKMNIAPEDIVCVSVMPCTAK 375
Query: 359 KSEIDMELFYGEYAGH--DMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGI 416
K EI E + AG D+D +TTRE R+++ I +L + D +++GAG+
Sbjct: 376 KFEIQRE---DQDAGGVPDVDISITTRELARLIRKVGINFRSLPDEGFDDPLGESTGAGV 432
Query: 417 IFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVT 476
IFGATGGVMEAALRTA + G+ F VR + GI EA + + ++++AV
Sbjct: 433 IFGATGGVMEAALRTAVEELTGETLEKVEFTEVRGT----EGIKEAVYNVAGMDVKVAVA 488
Query: 477 SGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQP-----IHESGELAVKRGSNLY 531
SGL+N + ++D I A E Y FVEIM CPGGCV GGGQP + ++ R LY
Sbjct: 489 SGLSNAKIIMDKIRAKEADYHFVEIMCCPGGCVNGGGQPQVHADVRNFEDVKAIRAKVLY 548
Query: 532 FIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
D +R SHEN IK +Y+++ +P S KAH +LHT +
Sbjct: 549 DNDAAKTLRKSHENPSIKRVYSEYLGEPGSEKAHHILHTTY 589
>gi|106894819|ref|ZP_01361933.1| Ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding:Iron hydrogenase,
small subunit:Hydrogenase large subunit-like
[Clostridium sp. OhILAs]
gi|106773891|gb|EAT30461.1| Ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding:Iron hydrogenase,
small subunit:Hydrogenase large subunit-like
[Clostridium sp. OhILAs]
Length = 578
Score = 483 bits (1242), Expect = e-134, Method: Composition-based stats.
Identities = 256/583 (43%), Positives = 362/583 (62%), Gaps = 21/583 (3%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
MV LTID I++ + TI+EAA + I IP LC LKG+N +CRVCVVE +L+
Sbjct: 1 MVKLTIDGIQVEVPKGTTILEAARTLDIHIPTLCHLKGVNNSGSCRVCVVE--SGPRLVA 58
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
+C+ E+GM + TN+ KVR R+ V++ILS H +C C+RS NC LQ+L+++LNI+D
Sbjct: 59 SCSIMAEDGMDIKTNTAKVRESRKTVVKLILSDHKRECTTCIRSENCELQSLSSELNIRD 118
Query: 121 VLYEEQLEDQPWDKNFPLI-RDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSG 179
+ Y+ + D P + RD +KCI C RCI C K+Q ++ G TT+ +
Sbjct: 119 IEYDGERLQLGTDSLSPSVSRDPEKCILCGRCISTCSKVQEVHAIGFIERGFDTTVAPAY 178
Query: 180 SRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHI 239
++++ D C+ CGQCIT CPVGAL E+++ + W+A+ + +K VVVQ APAIR A GE
Sbjct: 179 AKSLDDVFCTNCGQCITACPVGALYEKENIKDVWKAIYDKEKYVVVQTAPAIRAALGEEF 238
Query: 240 GLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSC 299
G+ + + K+ AL+R+G D VFDT F+ADLTIMEE E I R + GE + P+ TSC
Sbjct: 239 GIPVGTSVTGKMVAALRRLGFDKVFDTDFTADLTIMEEGTELISRLTSGE--NLPLMTSC 296
Query: 300 CPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKK 359
CPGW++F + YP ++ +LS+ KSP +M GA++KSYFAEK+ P+ I +V+IMPC AKK
Sbjct: 297 CPGWIKFAEHFYPDMLDNLSTCKSPHEMEGALIKSYFAEKMAMDPKKIVTVSIMPCTAKK 356
Query: 360 SEIDMELFYGEYAG---HDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGI 416
E GE + D+D VLTTRE RM+K A I E L E D F +++GA +
Sbjct: 357 ----FESARGELSNDGLQDVDLVLTTRELARMIKEAGIDFENLPVEEFDNPFGESTGAAV 412
Query: 417 IFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVT 476
IFG TGGV EAALRT + + GK + VR + +IE + N++ V
Sbjct: 413 IFGVTGGVAEAALRTVFEILSGKELETVNYTAVRGLEGVKEAVIELPNGMTINSI---VA 469
Query: 477 SGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHES-----GELAVKRGSNLY 531
GL N R+ +D + GEK Y F+E+MACPGGCV GGGQPI +S ++ ++R S +Y
Sbjct: 470 HGLGNARKALDVVRNGEKQYHFIEVMACPGGCVTGGGQPIVDSEYRMDHDIRLQRASAIY 529
Query: 532 FIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDHFI 574
D++ +R SH+N I +Y +F E PNS +H LHT H++
Sbjct: 530 AEDESKVLRKSHKNPYITKIYEEFLEAPNSEVSHKHLHT-HYV 571
>gi|147678345|ref|YP_001212560.1| hypothetical hydrogenase subunit [Pelotomaculum thermopropionicum
SI]
gi|146274442|dbj|BAF60191.1| hypothetical hydrogenase subunit [Pelotomaculum thermopropionicum
SI]
Length = 574
Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats.
Identities = 263/574 (45%), Positives = 359/574 (62%), Gaps = 10/574 (1%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
M+ LTIDN K++ + TI+EAA+ GI IP LC+LK IN I ACR+C+VE++G +
Sbjct: 1 MITLTIDNQKVAVEPGSTILEAAKKLGINIPTLCYLKDINVIGACRICMVEVQGARTFVP 60
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
AC V EGMVV TN+P V R+ +++ILS H +C CVR+ NC LQ LA I++
Sbjct: 61 ACVAPVAEGMVVRTNTPAVIKARKLVLELILSDHPMECLTCVRNQNCELQKLAEQFGIKE 120
Query: 121 VLYEEQLEDQPWDKNFP-LIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSG 179
V ++ + P D + P +IRD +KC+ C RC+ VC IQ++N + G T I +
Sbjct: 121 VRFDGAKTEYPIDDSSPAIIRDPRKCVLCRRCVAVCSNIQTVNALTAQERGFDTLIAPAF 180
Query: 180 SRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHI 239
+ +A+ +C CGQC CP A++E+DD +K W A+A+P K VVVQ APA R GE +
Sbjct: 181 NEKLANMECVQCGQCSLVCPTAAIQEKDDIDKVWAALADPKKHVVVQTAPATRVQLGETM 240
Query: 240 GLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSC 299
G++ K+ L+R+G + VFDT F+ADLTI+EE E ++R G + PM TSC
Sbjct: 241 GMEPGSIVTGKMVAGLRRLGFNKVFDTDFTADLTILEEGNELLQRIKTGGV--LPMITSC 298
Query: 300 CPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKK 359
PGW++F + YP L+ HLS+ KSP QMFGA+ K+Y+A+K G P DIF V+IMPC AKK
Sbjct: 299 SPGWIKFAEHFYPDLLPHLSTCKSPQQMFGALAKTYYAQKEGIDPADIFVVSIMPCTAKK 358
Query: 360 SEIDM-ELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIF 418
E E+ Y D+D VLT+RE RM K A+I L E E D ++GAG IF
Sbjct: 359 FECQRPEMKDSGY--QDVDVVLTSRELGRMFKQANINIAELPEEEYDAPLGISTGAGEIF 416
Query: 419 GATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSG 478
GATGGVMEAALRT Y + GK F R +G+ EA+ + + ++IA+T+G
Sbjct: 417 GATGGVMEAALRTVYEVVTGKELDNINFVECRGL----TGVKEATIQVGDLPVKIAITNG 472
Query: 479 LANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSK 538
L N R+++D + AGE Y F+EIM CPGGC+GGGG PI + E+ +KR Y D+
Sbjct: 473 LGNARKVLDKVRAGEADYHFIEIMCCPGGCIGGGGSPIPTNTEIRLKRIDATYTEDERMV 532
Query: 539 VRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
+R SHEN +KALY +F EKP HK+H LLHT +
Sbjct: 533 LRKSHENPAVKALYEEFLEKPLGHKSHELLHTHY 566
>gi|121534125|ref|ZP_01665950.1| hydrogenases, Fe-only [Thermosinus carboxydivorans Nor1]
gi|121307228|gb|EAX48145.1| hydrogenases, Fe-only [Thermosinus carboxydivorans Nor1]
Length = 574
Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats.
Identities = 265/574 (46%), Positives = 361/574 (62%), Gaps = 10/574 (1%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
MVN+TID K+ +N T++EAA S G+ IP LC+ + ACRVC+VE+EG L+
Sbjct: 3 MVNITIDGQKVQVPKNATVLEAARSCGVKIPSLCYHPELRPEGACRVCMVEVEGARTLVA 62
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
+C V EGMVV TN+P VR R+ V+++L+ H C C R+ NC LQT+A DL I+
Sbjct: 63 SCVYPVSEGMVVRTNTPAVRQARKLVVELLLANHPQDCLSCQRNLNCELQTIAADLGIRK 122
Query: 121 VLYEEQLEDQPWDKNFP-LIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSG 179
+ ++ + + P D + P L+RD KCI C RCI+ C + Q ++++ G TT+ +
Sbjct: 123 IRFDGEKKSYPLDADNPSLVRDPSKCILCGRCIRACSERQGVHVYSFVNRGFNTTVAPAF 182
Query: 180 SRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHI 239
++ + C+ CGQC + CP GA+ E+DDT W+A+++P K VVVQ APA+R A GE +
Sbjct: 183 NQGLHQVACTYCGQCASVCPTGAIVEKDDTAAVWQALSDPAKHVVVQTAPAVRVALGEAL 242
Query: 240 GLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSC 299
G+ K+ AL+R+G D VFDT F+ADLTIMEE EF++R +KG PM TSC
Sbjct: 243 GMGTGSIVTGKMVAALRRLGFDKVFDTDFTADLTIMEEGSEFLDRLAKG--GKLPMITSC 300
Query: 300 CPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKK 359
PGWV FI+ YP L+ HLS+AKSP QMFGA+ K+Y+AE++G P+DI SV+IMPC AKK
Sbjct: 301 SPGWVNFIELMYPDLLDHLSTAKSPQQMFGALAKTYYAERVGIDPKDIVSVSIMPCTAKK 360
Query: 360 SE-IDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIF 418
+E + E+ Y D+D VLTTRE RM++ A I L E E D ++GAG+IF
Sbjct: 361 AEAVRPEMRASGY--QDVDYVLTTRELARMIREAGIDFAGLPEEEYDAPLGISTGAGVIF 418
Query: 419 GATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSG 478
GATGGVMEAALRT + GK F H+ + +GI EA + + +++AV
Sbjct: 419 GATGGVMEAALRTVAELVTGKELECIDF----HNVRGLTGIKEAEVPVGDMTVKVAVAHT 474
Query: 479 LANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSK 538
LAN R L+D I GE Y F+EIMACPGGC+GGGGQPI E+ +R ++Y D S+
Sbjct: 475 LANARMLLDQIRRGEADYHFIEIMACPGGCIGGGGQPIPTCAEVRQQRIKSIYECDSCSQ 534
Query: 539 VRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
R SHEN IK LY + P K+H LLHT +
Sbjct: 535 FRKSHENPAIKELYETWLGTPLGEKSHRLLHTHY 568
>gi|57235003|ref|YP_180897.1| [Fe] hydrogenase, large subunit HymC, putative [Dehalococcoides
ethenogenes 195]
gi|57225451|gb|AAW40508.1| [Fe] hydrogenase, large subunit HymC, putative [Dehalococcoides
ethenogenes 195]
Length = 573
Score = 473 bits (1216), Expect = e-131, Method: Composition-based stats.
Identities = 262/574 (45%), Positives = 351/574 (61%), Gaps = 9/574 (1%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
MV L IDN +IS E TIM+AA+ A I IP LC+ +G+ + CRVCVVE+EG+ +L T
Sbjct: 1 MVTLNIDNKQISVPEGTTIMQAAKQANINIPHLCYFEGLKSYSGCRVCVVEIEGEPRLAT 60
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
+C+ V EGM V T+S +VR RR ++++L+ H C C R+ NC L LA + ++
Sbjct: 61 SCSRKVAEGMKVNTHSARVRRARRTILEILLANHPQDCFNCERNQNCDLLRLAFECGVKK 120
Query: 121 VLYEEQLED-QPWDKNFP-LIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVS 178
+ +EE + P D P +IRD KCI C RC++VC IQ++N G T + S
Sbjct: 121 LRFEESEKRVLPIDSTSPSIIRDPNKCIACGRCVRVCHDIQTVNAIGFINKGPDTMVATS 180
Query: 179 GSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEH 238
R + + C+ CGQCI CPVGA++ER + W A+A+P K VVVQ AP++R + GE
Sbjct: 181 MDRGMGNVACANCGQCILVCPVGAIKERSAVDAVWAAIADPTKHVVVQEAPSVRVSLGEE 240
Query: 239 IGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTS 298
+GL K++ AL+R+G D VFDT F+ADLTIMEE E +ER G + P TS
Sbjct: 241 LGLPAGTLVAKKMYAALRRLGFDAVFDTNFTADLTIMEEGSELVERVKDGGV--LPQITS 298
Query: 299 CCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAK 358
CCPGWV+F++ YP L ++SSAKSP QMFGAV K+Y+AEK G P+DI +V++MPC AK
Sbjct: 299 CCPGWVKFMEHYYPELAPNVSSAKSPQQMFGAVCKTYYAEKSGIDPKDIINVSVMPCTAK 358
Query: 359 KSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIF 418
K E + D+D VLTTRE RM+K A + +L E + L +GA IF
Sbjct: 359 KFECQRPEM-NDSGFKDVDYVLTTRELARMIKEAGLDFASLDEEPAEDLLGLYTGAATIF 417
Query: 419 GATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSG 478
GATGGVMEAA+R+AY I G+ + VR GI AS + +++AV G
Sbjct: 418 GATGGVMEAAIRSAYTLITGRELENLDIEPVRGL----EGIKTASVNIDGLEVKVAVAHG 473
Query: 479 LANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSK 538
L N R L+D I+ G Y F+EIMACPGGCVGGGGQPI L KRG LY D+N
Sbjct: 474 LGNARHLLDEIKEGVSPYHFIEIMACPGGCVGGGGQPIRFDSTLKKKRGEALYEEDRNMA 533
Query: 539 VRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
R SH N ++ +Y D+ EKP ++H LLHT++
Sbjct: 534 KRCSHHNPSVEKIYKDYLEKPLGKRSHKLLHTEY 567
>gi|150391798|ref|YP_001321847.1| hydrogenase, Fe-only [Alkaliphilus metalliredigens QYMF]
gi|149951660|gb|ABR50188.1| hydrogenase, Fe-only [Alkaliphilus metalliredigens QYMF]
Length = 551
Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats.
Identities = 249/551 (45%), Positives = 344/551 (62%), Gaps = 15/551 (2%)
Query: 2 VNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLITA 61
V LTIDNI + + TI+EAA++ G+ IP LCFLK NEI ACRVC+VE++G L +
Sbjct: 4 VTLTIDNITVEVPKEYTILEAAKTVGVDIPTLCFLKDANEIGACRVCLVEIQGARALQAS 63
Query: 62 CNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQDV 121
C + V EGMV+ TN+ K+R R+ TV++ILS H+ +C C R+ +C LQ+LA +LNI ++
Sbjct: 64 CVHPVAEGMVIKTNTKKLRDTRKSTVELILSNHNRECLTCFRNKSCELQSLAEELNISEI 123
Query: 122 LYE-EQLEDQPWDKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGS 180
+E E+ DK+ ++RDS KCI C RC+ VC +Q +I E G T I+ + +
Sbjct: 124 PFEGEKTVGTIDDKSTSIVRDSSKCILCGRCVNVCKNVQKTSILEFTNRGFETQISPAFN 183
Query: 181 RTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIG 240
+++ + C CGQCI CPV ALRE++D E+ W A+ +P+ VVVQ APA+R A GE G
Sbjct: 184 KSMNETPCIYCGQCIVSCPVAALREKEDIERVWDAIEDPEIHVVVQTAPAVRAALGEEFG 243
Query: 241 LDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERF-SKGELKDKPMFTSC 299
L + K+ +LKR+G D VFDT F ADLTIMEE +E + R + G+L PM TSC
Sbjct: 244 LPIGSRVTGKMVASLKRLGFDQVFDTNFGADLTIMEEGHELLHRLQNNGKL---PMITSC 300
Query: 300 CPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKK 359
PGWVR+ + YP + +LS+ KSP QM GA++KSY+AEK P+ IF V+IMPC +KK
Sbjct: 301 SPGWVRYCEFNYPEFIENLSTCKSPHQMLGAIIKSYYAEKQQIDPKKIFVVSIMPCTSKK 360
Query: 360 SEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFG 419
SE + D+D VLTTRE +M+K A I L++ E D + +GAG IFG
Sbjct: 361 SEAARPEMTVD-GLRDVDAVLTTRELAKMIKQARIEFLKLEDAEFDPALGEYTGAGAIFG 419
Query: 420 ATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGL 479
ATGGVMEAALRT + G+ ++ H+ + +GI EA L ++IAV G
Sbjct: 420 ATGGVMEAALRTLADTLTGQELE----EIEYHNIRGVAGIKEAEINLGGQTIKIAVVHGT 475
Query: 480 ANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQP-----IHESGELAVKRGSNLYFID 534
A +L++ I++GEK Y F+EIM C GGCV GGGQP + ++ V+R LY D
Sbjct: 476 AMASKLLEMIKSGEKEYHFIEIMGCSGGCVTGGGQPHVPARVKMDCDIRVERAKALYEED 535
Query: 535 KNSKVRYSHEN 545
++R SHEN
Sbjct: 536 TVKQLRKSHEN 546
>gi|150385823|ref|ZP_01924420.1| hydrogenase, Fe-only [Victivallis vadensis ATCC BAA-548]
gi|150257816|gb|EDM95131.1| hydrogenase, Fe-only [Victivallis vadensis ATCC BAA-548]
Length = 578
Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats.
Identities = 253/579 (43%), Positives = 347/579 (59%), Gaps = 20/579 (3%)
Query: 2 VNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGI-----NEIAACRVCVVELEGKE 56
+NL I+ +S TI+EAAE I IP LC K + A+CR+CVVE++G+
Sbjct: 3 INLKINGQPVSVAPGSTILEAAEKLEIKIPTLCHFKMDCFHVDHRSASCRICVVEVKGRP 62
Query: 57 KLITACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDL 116
L AC+ EGM V+TN+ + RR + ++LS H C IC ++ NC LQ LA ++
Sbjct: 63 NLAPACSTPAAEGMEVHTNTLRAINARRTILDLLLSDHPKDCLICPKNLNCQLQALAQEM 122
Query: 117 NIQDVLYEEQLEDQPWDKNFP---LIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGART 173
+ +LY+ E ++K+ + RD KCI C RC C+ IQ++ + G G
Sbjct: 123 GLHHLLYKG--EQSTYNKDLSSQAIARDLDKCIMCRRCETACNAIQTVGVLSGVGRGFNA 180
Query: 174 TINVSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRT 233
+ +G + +A+ +C CGQC+ CPVGAL E D WRA+ +P K VVVQ APA+R
Sbjct: 181 VVAPAGLKPLAETECVFCGQCVQACPVGALSEIDYKYPVWRALNDPAKTVVVQTAPAVRV 240
Query: 234 AWGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDK 293
A GE GL S K+ AL+ +G D VFDT F+ADLTIMEE E IER G ++
Sbjct: 241 AIGEAFGLPPGSVSTGKMVTALRMLGFDRVFDTDFAADLTIMEETTELIERIKSG--RNL 298
Query: 294 PMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIM 353
P+ TSCCPGWV+F++ Q+P L+ S+AKSP QMFGA+ K+YFA+K G PE++ V++M
Sbjct: 299 PILTSCCPGWVKFLEHQFPELIYMPSTAKSPQQMFGAITKTYFAQKAGIAPENLTVVSVM 358
Query: 354 PCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASG 413
PC++KK E E F + D+D V++TRE M++ A I + L+E E D +++G
Sbjct: 359 PCLSKKYEAAREEFSRD-GIRDVDIVISTRELADMIREAGIQFDQLEEGEYDSPLGESTG 417
Query: 414 AGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRI 473
A +IFGATGGV+EAALRTA I G++ F VR GI EA+ + L +
Sbjct: 418 AAVIFGATGGVLEAALRTAADWIAGEDLQEIDFTGVRGL----DGIKEAAVNINGLELHV 473
Query: 474 AVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAV--KRGSNLY 531
AV SGL N R+L++ I+ GE Y +EIMACPGGC+ GGGQP H G+ + KR LY
Sbjct: 474 AVCSGLGNARKLLEKIQKGEADYQAIEIMACPGGCLNGGGQPYHH-GDTTILQKRLEALY 532
Query: 532 FIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHT 570
DK+ VR SH N I+ LY +F +P SH AH LLHT
Sbjct: 533 RDDKSQPVRKSHRNPSIQRLYAEFLGEPGSHFAHQLLHT 571
>gi|153940304|ref|YP_001391107.1| [Fe] hydrogenase [Clostridium botulinum F str. Langeland]
gi|152936200|gb|ABS41698.1| [Fe] hydrogenase [Clostridium botulinum F str. Langeland]
Length = 577
Score = 468 bits (1203), Expect = e-130, Method: Composition-based stats.
Identities = 250/579 (43%), Positives = 348/579 (60%), Gaps = 14/579 (2%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFL-----KGINEIAACRVCVVELEGK 55
+V L I+ ++ ++ TI++AA+ I IP LC + N+ +CRVCVVE+EG+
Sbjct: 3 LVTLNINGKELKVEKGTTILDAAKLLNINIPTLCNFHLNDNRTENKPGSCRVCVVEVEGR 62
Query: 56 EKLITACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLAND 115
+ L AC V EGM+V TNS + RR V+++LS H C +C ++ C LQ LA D
Sbjct: 63 KNLAPACCTPVGEGMIVKTNSIRAIKARRAIVELLLSDHPKDCLLCEKNTKCELQKLAAD 122
Query: 116 LNIQDVLYEEQLEDQPWD-KNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTT 174
+ I+++ Y+ + P D ++ ++RD KCI C RCI +C+++Q++ G G T
Sbjct: 123 MGIREMKYQGDVSMYPIDISSYSIVRDMDKCILCRRCITMCNEVQTVGTLSAIGRGFETV 182
Query: 175 INVSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTA 234
+ + S I + +C+ CGQC++ CP GAL E ++T K W A++ DKVV+VQ APAIR A
Sbjct: 183 VAPAFSEAIKNTNCTFCGQCVSVCPTGALTEVNNTSKVWDALSQKDKVVIVQTAPAIRAA 242
Query: 235 WGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKP 294
GE GL+ A K+ AL+++G VFDT F+ADLTIMEEA EFI R G P
Sbjct: 243 LGEEFGLEPGTAVTGKMVAALRQLGFSKVFDTDFAADLTIMEEASEFIHRLEHG--GTLP 300
Query: 295 MFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMP 354
M TSCCPGW++F + + L+ SS KSP QMFGA+ KSY AEK+ P+DI V++MP
Sbjct: 301 MLTSCCPGWIKFFEHNFNDLMDIPSSCKSPQQMFGAIAKSYLAEKMKVDPKDIIVVSVMP 360
Query: 355 CVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGA 414
C+AKK E E D+D V++TRE +M+ A I +L+E E D ++GA
Sbjct: 361 CLAKKYEAKREEM-KRNGIPDVDIVISTRELAKMIVEAGIDFNSLQEEEFDNPLGQSTGA 419
Query: 415 GIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIA 474
+IFG TGGVMEAALRTAY + F VR E GI EA+ +K+ +++A
Sbjct: 420 SVIFGTTGGVMEAALRTAYEWVTKGTLKDVEFIEVRG----EDGIREATVNIKDTEVKVA 475
Query: 475 VTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQP-IHESGELAVKRGSNLYFI 533
+ SGL N R+L++ I G+ Y +EIMACP GCV GGGQP I+ + KR LY
Sbjct: 476 IASGLGNARKLLNDIRNGKSKYHMIEIMACPSGCVDGGGQPYIYGDTNILKKRTEALYKE 535
Query: 534 DKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
D N ++R SHEN IK LY ++ KP KAH LLHT +
Sbjct: 536 DSNKEIRKSHENPYIKKLYEEYLGKPYGEKAHELLHTKY 574
>gi|148379807|ref|YP_001254348.1| catalytic subunit of iron-only hydrogenase [Clostridium botulinum A
str. ATCC 3502]
gi|153932525|ref|YP_001384105.1| [Fe] hydrogenase [Clostridium botulinum A str. ATCC 19397]
gi|153935257|ref|YP_001387645.1| [Fe] hydrogenase [Clostridium botulinum A str. Hall]
gi|148289291|emb|CAL83387.1| putative catalytic subunit of iron-only hydrogenase [Clostridium
botulinum A str. ATCC 3502]
gi|152928569|gb|ABS34069.1| [Fe] hydrogenase [Clostridium botulinum A str. ATCC 19397]
gi|152931171|gb|ABS36670.1| [Fe] hydrogenase [Clostridium botulinum A str. Hall]
Length = 577
Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats.
Identities = 249/579 (43%), Positives = 346/579 (59%), Gaps = 14/579 (2%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFL-----KGINEIAACRVCVVELEGK 55
+V L I+ + + TI++AA+ I IP LC K N+ +CRVCVVE+EG+
Sbjct: 3 LVTLNINGKDLKVENGTTILDAAKLLNINIPTLCNFHLNDNKTENKPGSCRVCVVEVEGR 62
Query: 56 EKLITACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLAND 115
+ L AC V EGM+V TNS + RR V+++LS H C +C ++ C LQ LA D
Sbjct: 63 KNLAPACCTPVGEGMIVKTNSIRAIKARRAIVELLLSDHPKDCLLCEKNTKCELQKLAAD 122
Query: 116 LNIQDVLYEEQLEDQPWD-KNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTT 174
+ I+++ Y+ + P D ++ ++RD KCI C RCI +C+++Q++ G G T
Sbjct: 123 MGIREMKYQGDVSMYPIDISSYSIVRDMDKCILCRRCITICNEVQTVGTLSAIGRGFETV 182
Query: 175 INVSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTA 234
+ + S I + +C+ CGQC++ CP GAL E ++T K W A++ DK+V+VQ APAIR A
Sbjct: 183 VAPAFSEAIKNTNCTFCGQCVSVCPTGALTEVNNTSKVWDALSQKDKIVIVQTAPAIRAA 242
Query: 235 WGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKP 294
GE GL+ K+ AL+++G VFDT F+ADLTIMEEA EFI R G P
Sbjct: 243 LGEEFGLEPGTTVTGKMVAALRQLGFSKVFDTDFAADLTIMEEASEFIHRLEHG--GTLP 300
Query: 295 MFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMP 354
M TSCCPGW++F + + L+ SS KSP QMFGA+ KSY AEK+ P+DI V++MP
Sbjct: 301 MLTSCCPGWIKFFEHNFNDLMDIPSSCKSPQQMFGAIAKSYLAEKMKVDPKDIIVVSVMP 360
Query: 355 CVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGA 414
C+AKK E E D+D V++TRE +M+ A I +L+E E D +++GA
Sbjct: 361 CLAKKYEAKREEM-KRNGIPDVDIVISTRELAKMIVEAGIDFNSLQEEEFDNPLGESTGA 419
Query: 415 GIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIA 474
+IFG TGGVMEAALRTAY + F VR E GI EA+ +K+ +++A
Sbjct: 420 SVIFGTTGGVMEAALRTAYEWVTKGTLKDVEFIEVRG----EDGIREATVNIKDTEVKVA 475
Query: 475 VTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQP-IHESGELAVKRGSNLYFI 533
+ SGL N R+L++ I G+ Y +EIMACP GCV GGGQP I+ + KR LY
Sbjct: 476 IASGLGNARKLLNDIRNGKSKYHMIEIMACPSGCVDGGGQPYIYGDTNILKKRTEALYKE 535
Query: 534 DKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
D N ++R SHEN IK LY ++ KP KAH LLHT +
Sbjct: 536 DSNKEIRKSHENPYIKKLYEEYLGKPYGEKAHELLHTKY 574
>gi|85858940|ref|YP_461142.1| iron only hydrogenase large subunit [Syntrophus aciditrophicus SB]
gi|85722031|gb|ABC76974.1| iron only hydrogenase large subunit [Syntrophus aciditrophicus SB]
Length = 605
Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats.
Identities = 248/589 (42%), Positives = 354/589 (60%), Gaps = 14/589 (2%)
Query: 2 VNLTIDNIKISAKENMTIMEAAESAGIPIPKLC-FLKGINEIAACRVCVVELEGKEKLIT 60
+NLT++NI + + T+ +AA+ AG+ IP LC + + ACRVCVVE+EG L
Sbjct: 8 INLTVNNIDVEVEAGATLYQAAQKAGVNIPTLCAWFDKDHTPGACRVCVVEVEGMPSLAA 67
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
+C + GM V+TNS KVR R+ V++IL+ H +C CVR+GNC LQ +A + +++
Sbjct: 68 SCAYPAQNGMKVFTNSDKVRQARKMIVELILASHPQECNFCVRNGNCELQKVAEMVGVKN 127
Query: 121 VLY--EEQLEDQPWDKNFP-LIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINV 177
+ Y EE D+ D + P ++RDS KCI C RC+ VC+ IQ++ G +T++
Sbjct: 128 IRYDSEEFDRDRELDTSSPAIVRDSSKCINCRRCVTVCESIQTVAALSPMNRGYESTVSP 187
Query: 178 SGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGE 237
+ + + + +C CGQC+ CPVGAL E+D ++ W+A+ +P + VVVQ APAIR A GE
Sbjct: 188 AFNLPLNETNCVNCGQCVMACPVGALYEKDQVDEVWKALQDPTRHVVVQEAPAIRAALGE 247
Query: 238 HIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFT 297
G+ K+ AL+R+G D VFDT F+ADLTI+EE E ++R +G PM T
Sbjct: 248 EFGMPPGSLVTGKMIAALRRLGFDKVFDTNFTADLTIIEEGNELLKRVKEG--GTLPMIT 305
Query: 298 SCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVA 357
SC PGW++F + YP L+ HLS+ KSP QMFGA+ K+Y+A+ G P +IFSV+IMPC A
Sbjct: 306 SCSPGWIKFCEHFYPDLLGHLSTCKSPQQMFGALAKTYYAQVSGIDPANIFSVSIMPCTA 365
Query: 358 KKSEIDM-ELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGI 416
KK E E+ Y D+D VLTTRE RM+K A I L + + D + +GA
Sbjct: 366 KKYEAQRPEMKSSGY--QDVDVVLTTRELARMIKEAGIDFVNLPDEKYDDPMGEYTGAAT 423
Query: 417 IFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVT 476
IFGATGGVMEAALRT Y + G+ VR ++ + ++++AV
Sbjct: 424 IFGATGGVMEAALRTVYAVVTGEELSDLNIMPVRGLEGVKAAAVPVGAL---GDVKVAVA 480
Query: 477 SGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKN 536
GL N R+L+D I AG+ Y F+E+M CPGGCV GGG+PI + E+ + R LY D
Sbjct: 481 HGLGNARKLLDEIRAGKSEYAFIEVMCCPGGCVAGGGEPIPTTDEIRMLRAGALYRDDGE 540
Query: 537 -SKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDHFIWEMPRSPKRD 584
+ R SH++ +KA+Y F ++P HK+H LLHT H++ P D
Sbjct: 541 VQQYRQSHQSPPVKAVYEKFLKEPLGHKSHELLHT-HYVQRGQSLPHLD 588
>gi|134299508|ref|YP_001113004.1| hydrogenases, Fe-only [Desulfotomaculum reducens MI-1]
gi|134052208|gb|ABO50179.1| hydrogenases, Fe-only [Desulfotomaculum reducens MI-1]
Length = 593
Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats.
Identities = 261/591 (44%), Positives = 365/591 (61%), Gaps = 17/591 (2%)
Query: 2 VNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLITA 61
V LTIDN+K+ ++ TI++AA+ GI IP LC++K IN I ACR+CVVE+ G L A
Sbjct: 4 VTLTIDNVKVEVEQGSTILDAAKKIGINIPTLCYMKEINAIGACRICVVEVVGARALQAA 63
Query: 62 CNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQDV 121
C EGMVV TNS VR R+ T+++I S H +C C+R+ NC LQ L+ + +++V
Sbjct: 64 CVTPATEGMVVKTNSAAVRASRKMTLELIQSNHPQECNTCLRNNNCELQALSEAMGLKEV 123
Query: 122 LY----EEQLEDQPWDKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINV 177
+ + +D + + ++RD +KCI C RC+ VC+K+Q + G TTI
Sbjct: 124 RFIRPSQSHSKDDIDNSSPSIVRDPRKCILCRRCVAVCEKVQGVKCISAVNRGFETTIAP 183
Query: 178 SGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGE 237
++ + D +C++CGQC CP GA+ E DDT K WRA+ + K VVVQ APA+R A E
Sbjct: 184 PFNQGLFDVNCTMCGQCTLVCPTGAITEVDDTGKVWRALDDSTKHVVVQTAPAVRVAIAE 243
Query: 238 HIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFT 297
G++ S K+ AL+R+G D V DT F+ADLTI+EE EFI+R ++G + PM T
Sbjct: 244 EFGMEPGTVSTGKLVAALRRLGFDSVMDTDFAADLTILEEGNEFIKRVTEGGV--LPMIT 301
Query: 298 SCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVA 357
SC PGW+++I+ YP L++HLS+ KSP QMFGA++KS++AEK P +I SV+IMPC A
Sbjct: 302 SCSPGWIKYIEMYYPDLLAHLSTCKSPQQMFGALVKSFYAEKKAIDPANIVSVSIMPCTA 361
Query: 358 KKSEIDM-ELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGI 416
KK E EL Y D+D VLTTRE RML+ I + L + + D ++GA +
Sbjct: 362 KKFEAQRDELRDSGY--QDVDIVLTTRELARMLREIGIDWDNLSDDDYDAPMGLSTGAAV 419
Query: 417 IFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVT 476
IFG TGGVMEAA+RT Y + + P VR GI EA+ + + ++++AV
Sbjct: 420 IFGVTGGVMEAAVRTVYEVLTKEAMPNINLTPVRGM----EGIKEATLKVGDLDVKVAVA 475
Query: 477 SGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKN 536
L N R+L+D I AGE Y F+EIM CPGGC+GGGGQPI + E+ +KR + Y D+
Sbjct: 476 HTLGNARKLLDKIRAGEADYHFIEIMCCPGGCIGGGGQPIPTNLEVRLKRIAGTYRADEA 535
Query: 537 SKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDHFIWEMPRSPKRDRKG 587
+R SHEN IKA+Y +F +P K+H LLHT H++ PR R +G
Sbjct: 536 LPLRKSHENPAIKAIYEEFLGEPLGEKSHKLLHT-HYV---PRGVYRKPEG 582
>gi|147668873|ref|YP_001213691.1| hydrogenase, Fe-only [Dehalococcoides sp. BAV1]
gi|146269821|gb|ABQ16813.1| hydrogenase, Fe-only [Dehalococcoides sp. BAV1]
Length = 573
Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats.
Identities = 257/574 (44%), Positives = 350/574 (60%), Gaps = 9/574 (1%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
MV L IDN +++ E TI++AA+ A I IP LC+ +G+ + CRVCVVE+EG+ +L T
Sbjct: 1 MVTLNIDNKQVTVPEGTTILQAAKEANINIPHLCYFEGLKSYSGCRVCVVEIEGEPRLAT 60
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
+C+ V EGM V T+S +VR RR ++++L+ H C C R+ NC L LA + ++
Sbjct: 61 SCSRKVAEGMKVNTHSARVRRARRTILEILLANHPQDCFNCERNQNCDLLRLAFECGVKK 120
Query: 121 VLYEEQLED-QPWDKNFP-LIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVS 178
+ +EE + P D P +IRD KCI C RC++VC IQ++N G T + S
Sbjct: 121 LRFEESEKRVLPIDNTSPSIIRDPNKCIACGRCVRVCHDIQTVNAIGFINKGPDTMVATS 180
Query: 179 GSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEH 238
R + + C+ CGQCI CPVGA++ER + W A+A+P K VVVQ AP+IR + GE
Sbjct: 181 MDRGMGNVACANCGQCILVCPVGAIKERSAVDAVWAAIADPAKHVVVQEAPSIRVSLGEE 240
Query: 239 IGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTS 298
+GL K++ AL+R+G D VFDT F+ADLTI+EE E +ER +G + P TS
Sbjct: 241 LGLPAGTLVAKKMYAALRRLGFDAVFDTNFTADLTILEEGSELVERVKEGGV--LPQLTS 298
Query: 299 CCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAK 358
CCPGWV+F++ YP L ++SSAKSP QMFGAV K+Y+AEK G P+ I +V++MPC AK
Sbjct: 299 CCPGWVKFMEHYYPELAPNVSSAKSPQQMFGAVCKTYYAEKAGIDPKTIVNVSVMPCTAK 358
Query: 359 KSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIF 418
K E + D+D VLTTRE RM+K A + +L E + L +GA IF
Sbjct: 359 KFECQRPEM-NDSGFKDVDYVLTTRELARMIKEAGLDFVSLDEEPAEDLLGLYTGAATIF 417
Query: 419 GATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSG 478
GATGGVMEAA+R+AY I G+ + VR G+ A+ + L++AV G
Sbjct: 418 GATGGVMEAAIRSAYMLITGRELENLDIEPVRGL----EGVKTATLNVDGLELKVAVAHG 473
Query: 479 LANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSK 538
L N R L++ I+ G Y F+EIMACPGGCVGGGGQPI L KRG LY D+N
Sbjct: 474 LGNARALLEEIKEGTSPYHFIEIMACPGGCVGGGGQPIRFDSSLKKKRGEALYEEDRNMP 533
Query: 539 VRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
R SH N I +Y D+ EKP ++H LLHT++
Sbjct: 534 KRCSHHNPSIAKIYADYLEKPLGKRSHKLLHTEY 567
>gi|73748099|ref|YP_307338.1| putative [Fe] hydrogenase, large subunit HymC [Dehalococcoides sp.
CBDB1]
gi|73659815|emb|CAI82422.1| putative [Fe] hydrogenase, large subunit HymC [Dehalococcoides sp.
CBDB1]
Length = 573
Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats.
Identities = 257/574 (44%), Positives = 350/574 (60%), Gaps = 9/574 (1%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
MV L IDN +++ E TI++AA+ A I IP LC+ +G+ + CRVCVVE+EG+ +L T
Sbjct: 1 MVTLNIDNKQVTVPEGATILQAAKEANINIPHLCYFEGLKSYSGCRVCVVEIEGEPRLAT 60
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
+C+ V EGM V T+S +VR RR ++++L+ H C C R+ NC L LA + ++
Sbjct: 61 SCSRKVAEGMKVNTHSARVRRARRTILEILLANHPQDCFNCERNQNCDLLRLAFECGVKK 120
Query: 121 VLYEEQLED-QPWDKNFP-LIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVS 178
+ +EE + P D P +IRD KCI C RC++VC IQ++N G T + S
Sbjct: 121 LRFEESEKRVLPIDNTSPSIIRDPNKCIACGRCVRVCHDIQTVNAIGFINKGPDTMVATS 180
Query: 179 GSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEH 238
R + + C+ CGQCI CPVGA++ER + W A+A+P K VVVQ AP+IR + GE
Sbjct: 181 MDRGMGNVACANCGQCILVCPVGAIKERSAVDAVWAAIADPAKHVVVQEAPSIRVSLGEE 240
Query: 239 IGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTS 298
+GL K++ AL+R+G D VFDT F+ADLTI+EE E +ER +G + P TS
Sbjct: 241 LGLPAGTLVAKKMYAALRRLGFDAVFDTNFTADLTILEEGSELVERVKEGGV--LPQITS 298
Query: 299 CCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAK 358
CCPGWV+F++ YP L ++SSAKSP QMFGAV K+Y+AEK G P+ I +V++MPC AK
Sbjct: 299 CCPGWVKFMEHYYPELAPNVSSAKSPQQMFGAVCKTYYAEKAGIDPKTIVNVSVMPCTAK 358
Query: 359 KSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIF 418
K E + D+D VLTTRE RM+K A + +L E + L +GA IF
Sbjct: 359 KFECQRPEM-NDSGFKDVDYVLTTRELARMIKEAGLDFVSLDEEPAEDLLGLYTGAATIF 417
Query: 419 GATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSG 478
GATGGVMEAA+R+AY I G+ + VR G+ A+ + L++AV G
Sbjct: 418 GATGGVMEAAIRSAYMLITGRELENLDIEPVRGL----EGVKTATLNVDGLELKVAVAHG 473
Query: 479 LANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSK 538
L N R L++ I+ G Y F+EIMACPGGCVGGGGQPI L KRG LY D+N
Sbjct: 474 LGNARALLEEIKEGTSPYHFIEIMACPGGCVGGGGQPIRFDSSLKKKRGEALYEEDRNMP 533
Query: 539 VRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
R SH N I +Y D+ EKP ++H LLHT++
Sbjct: 534 KRCSHHNPSIAKIYADYLEKPLGKRSHKLLHTEY 567
>gi|116748289|ref|YP_844976.1| hydrogenases, Fe-only [Syntrophobacter fumaroxidans MPOB]
gi|116697353|gb|ABK16541.1| hydrogenases, Fe-only [Syntrophobacter fumaroxidans MPOB]
Length = 576
Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats.
Identities = 252/574 (43%), Positives = 348/574 (60%), Gaps = 10/574 (1%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
M++L ID +S E TI++AA G+ IP LC+LK IN I ACR+C+V+++G ++
Sbjct: 3 MISLMIDKQNVSVPEGSTILQAAGKIGVRIPTLCYLKDINVIGACRICMVQVQGARTMMA 62
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
AC V EGM+V TN+P+V RR +++ILS H +C CVR+ NC LQ LA + NI+
Sbjct: 63 ACVTPVTEGMIVRTNTPEVIAARRVVLELILSDHPMECLTCVRNQNCELQRLAEEFNIKG 122
Query: 121 VLYEEQLEDQPWDKNFPLI-RDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSG 179
+ ++ + D + P I RD +KCI C RCI VC ++Q + G T I +
Sbjct: 123 IRFDGARTEYGIDDSSPAIQRDPRKCILCRRCISVCSEVQGVKALTTGHRGFNTLIAPAF 182
Query: 180 SRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHI 239
+ +A+ +C CGQC CP GA+ E DDTEK W A+A+P K VVVQ APA R GE +
Sbjct: 183 NERLANVECVQCGQCSLVCPTGAIHEVDDTEKVWAALADPKKHVVVQTAPATRVQVGETM 242
Query: 240 GLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSC 299
G ++ L+R+G D VFDT F+ADLTI+EE E ++R G PM TSC
Sbjct: 243 GAAPGSIVTGQMVAGLRRLGFDKVFDTDFTADLTILEEGNELLQRLQNG--GALPMITSC 300
Query: 300 CPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKK 359
PGW++F + YP L+ HLS+ KSP QMFGA+ K+Y+A+K G P D+F V++MPC AKK
Sbjct: 301 SPGWIKFAEHFYPELLPHLSTCKSPQQMFGALAKTYYAQKAGIDPSDVFVVSVMPCTAKK 360
Query: 360 SE-IDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIF 418
E I E+ Y D+D VLT+RE RM K A + E L E D ++GAG IF
Sbjct: 361 FECIRPEMRSSGY--QDVDVVLTSRELGRMFKQAGLSMENLPPEEYDAPLGISTGAGEIF 418
Query: 419 GATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSG 478
GA+GGVMEAALRT Y + G++ FK R G+ EA+ + +R+A+T+G
Sbjct: 419 GASGGVMEAALRTVYEVVTGQSLETIEFKECRGL----DGVKEATVQVGALPVRVAITNG 474
Query: 479 LANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSK 538
L N R++++ I G + F+EIM CPGGCVGGGG PI + E+ + R +Y D+
Sbjct: 475 LGNARKVLEKIREGSSDHHFIEIMCCPGGCVGGGGSPIPTNKEIRLNRIDAVYREDERMA 534
Query: 539 VRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
+R SH+N + LY +F EKP HK+H LLHT +
Sbjct: 535 LRKSHDNPAVAELYKEFLEKPLGHKSHQLLHTHY 568
>gi|148269859|ref|YP_001244319.1| hydrogenase, Fe-only [Thermotoga petrophila RKU-1]
gi|147735403|gb|ABQ46743.1| hydrogenase, Fe-only [Thermotoga petrophila RKU-1]
Length = 582
Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats.
Identities = 253/572 (44%), Positives = 342/572 (59%), Gaps = 10/572 (1%)
Query: 2 VNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINE-IAACRVCVVELEGKEKLIT 60
V + I+ ++ +N+T++EA E AGI IP LC + E I ACRVCVVE+EG L
Sbjct: 4 VRIVINGRTLTVPDNLTVIEACEKAGIEIPALCHHPRLGESIGACRVCVVEVEGARNLQP 63
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
AC V +GMV+ T+S +V+ R+ + ++LS+H C C +G C Q L ++ D
Sbjct: 64 ACVTKVRDGMVIKTSSDRVKTARKFNLALLLSEHPNDCMTCEANGRCEFQDLIYKYDV-D 122
Query: 121 VLYEEQLEDQPWDKNFP-LIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSG 179
++ ++ +DK+ P ++RD KC+KC RC++ C ++Q ++I+ + G RT
Sbjct: 123 PIFGYGTKEGLFDKSSPAIVRDLSKCVKCQRCVRTCSELQGMHIYSMVERGHRTYPGTPF 182
Query: 180 SRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHI 239
+ + DC CGQC CP GA+ E + + +K++VVQ AP++R A GE
Sbjct: 183 DMPVYETDCIGCGQCAAFCPTGAIVENSAVKVVLEELEKKEKILVVQTAPSVRVAIGEEF 242
Query: 240 GLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSC 299
G S ++ AL+R+G DYVFDT F ADLTIMEE EF+ER KG+L+D PMFTSC
Sbjct: 243 GYAPGTISTGQMVAALRRLGFDYVFDTNFGADLTIMEEGSEFLERLEKGDLEDLPMFTSC 302
Query: 300 CPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKK 359
CPGWV ++ YP L + LSSAKSP M A++K+YFAEK+G KPEDIF V+IMPC AKK
Sbjct: 303 CPGWVNLVEKVYPELRTRLSSAKSPQGMLSALVKTYFAEKLGVKPEDIFHVSIMPCTAKK 362
Query: 360 SE-IDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIF 418
E + +L +D VLTTRE ++++ I L E E D ++GA ++F
Sbjct: 363 DEALRKQLMVNGVPA--VDVVLTTRELGKLIRMKKIPFANLPEEEYDAPLGISTGAAVLF 420
Query: 419 GATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSG 478
G TGGVMEAALRTAY GK P F+ VR G+ EA L +RIAV G
Sbjct: 421 GVTGGVMEAALRTAYELKTGKTLPKIVFEDVRGL----KGVKEAEIDLDGKKIRIAVVHG 476
Query: 479 LANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSK 538
AN R L++ I E Y FVE+MACPGGC+GGGGQP E+ KR +Y ID+
Sbjct: 477 TANVRNLVEKILRREVKYHFVEVMACPGGCIGGGGQPYSRDPEILRKRAEAIYTIDERMV 536
Query: 539 VRYSHENECIKALYNDFFEKPNSHKAHSLLHT 570
+R SHEN IK LY ++ E P SHKAH LLHT
Sbjct: 537 LRKSHENPAIKKLYEEYLEHPLSHKAHELLHT 568
>gi|89210761|ref|ZP_01189146.1| Ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding:Iron hydrogenase,
small subunit:Hydrogenase large subunit, C-terminal
[Halothermothrix orenii H 168]
gi|89159615|gb|EAR79278.1| Ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding:Iron hydrogenase,
small subunit:Hydrogenase large subunit, C-terminal
[Halothermothrix orenii H 168]
Length = 570
Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats.
Identities = 268/582 (46%), Positives = 359/582 (61%), Gaps = 24/582 (4%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
MV + ID + + ++ ++I+EAA A I IP LC+ +G++ CR+CVVE+EG+ L
Sbjct: 1 MVKINIDGLDLEVRDGISILEAARQAHIKIPTLCYEEGLSVYGGCRLCVVEIEGEALLKP 60
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQH--DCK--CAICVRSGNCTLQTLANDL 116
AC V +GMV+ T+SPKVR RR ++I++ H DC+ C C R+G+C L+ +A D+
Sbjct: 61 ACATEVNDGMVIKTHSPKVRDVRRTLFELIVASHNIDCQLNCLTCSRAGSCELREIAEDI 120
Query: 117 ---NIQDVLYEEQLEDQPWDKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGART 173
NI+ Y++ D ++ ++R+ KCI C RCI+ C+++Q + I+ G T
Sbjct: 121 GVSNIRLATYDKGYRDD--RSSYSIVREPNKCITCGRCIRKCEEVQEVGIFTTANRGPAT 178
Query: 174 TINVSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRT 233
+ + + + +C+ CGQCI CP GAL E EK W + + DK VVVQ APA+R
Sbjct: 179 VVTTFKEKGMGNVECTNCGQCIHACPTGALHEVYHYEKVWEVLHDRDKYVVVQTAPAVRV 238
Query: 234 AWGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERF-SKGELKD 292
A E GL ++ L+R+G D VFDT F+ADLTIMEE E IER + GEL
Sbjct: 239 ALSEAFGLKPGTIFTGQMVAGLRRLGFDRVFDTNFTADLTIMEEGTELIERLNNNGEL-- 296
Query: 293 KPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAI 352
PMFTSC PGW+++I+ YP + +LS+ KSP QMFGA+ KSY+A+K + I V++
Sbjct: 297 -PMFTSCSPGWIKYIEHFYPEFIDNLSTCKSPQQMFGAIAKSYYADKSNIPRDKIVVVSV 355
Query: 353 MPCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDAS 412
MPC AKK E G D+D VLTTRE RM+K A I L E DKL +S
Sbjct: 356 MPCTAKKFEARRPEMEG-----DVDYVLTTRELARMIKEAGIDITNLNAEEHDKLMGTSS 410
Query: 413 GAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLR 472
GA IFGATGGVMEAALRTAY + G+ FK VR E+GI EA TL L+
Sbjct: 411 GAADIFGATGGVMEAALRTAYELVTGEKLGQLDFKNVRG----EAGIKEAEVTLNGTQLK 466
Query: 473 IAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYF 532
+AV GL N R+L++ I++G K Y FVE+MACPGGC+GGGGQPI S ++ KR LY
Sbjct: 467 VAVAHGLGNVRKLMELIKSG-KEYHFVELMACPGGCIGGGGQPIPTSEDIRRKRIEALYK 525
Query: 533 IDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDHFI 574
IDKN K+R SHEN IK LY +F +K SHKAH LLHT H+I
Sbjct: 526 IDKNKKLRKSHENPYIKKLYQEFLDKHGSHKAHELLHT-HYI 566
>gi|114566548|ref|YP_753702.1| iron hydrogenase, small subunit [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
gi|114337483|gb|ABI68331.1| iron hydrogenase, small subunit [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 574
Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats.
Identities = 260/574 (45%), Positives = 356/574 (62%), Gaps = 10/574 (1%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
MVNLTID IK+S E TI++AA GI IP LCF + A CRVCV E+EG L
Sbjct: 1 MVNLTIDGIKVSVPEGSTILQAASEVGIKIPTLCFHPDQSIKANCRVCVCEVEGNRLLQA 60
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
AC V EGMVV T +PKV R+ +++ILS H C C+R+GNC LQ LA + I++
Sbjct: 61 ACAMPVFEGMVVKTRTPKVLDARKTILELILSNHPQDCLNCIRNGNCELQDLAQEYCIRE 120
Query: 121 VLYEEQLEDQPWDKNFP-LIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSG 179
+E ++ D + P L RD KCI C RCI+ C IQS+N +EG G + + +
Sbjct: 121 NPFEYKVRGFAKDFSTPSLFRDQDKCILCRRCIEACSVIQSVNALGMEGRGYNSMVVPTL 180
Query: 180 SRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHI 239
+ + D+ C +CGQCI CPVGA+ ER+ ++F AVANPDKVV+ Q+APA+R A E I
Sbjct: 181 GKALIDSPCVMCGQCIHACPVGAIGEREQIDEFLAAVANPDKVVITQIAPAVRVAIAEEI 240
Query: 240 GLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSC 299
G+ + + L++IG D+V T F+ADLTI+EE E ++R +G PMFTSC
Sbjct: 241 GMMTGELPMGTFVQGLRQIGFDHVLHTNFTADLTILEEGNELLKRLKEG--GTLPMFTSC 298
Query: 300 CPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKK 359
PGW+ F ++ YP L+ +LS+ KSP QMFGA+ K+Y+AEK+G P I+SV+IMPCVAKK
Sbjct: 299 SPGWINFCETFYPDLLDNLSTCKSPQQMFGALAKTYWAEKMGIDPSKIYSVSIMPCVAKK 358
Query: 360 SEIDM-ELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIF 418
E E+ Y D+D VLTTRE R+ + + + L ++ D +GA +IF
Sbjct: 359 FEAARPEMNDSGY--QDVDLVLTTREIGRLFRMSGLDFSKLPASDFDSWMGKYTGAAVIF 416
Query: 419 GATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSG 478
GA+GGVMEAALRT Y + GK F R +GI EA+ L +++A+ +G
Sbjct: 417 GASGGVMEAALRTVYEVVTGKTLEDVNFVATRGI----TGIKEATVDLDGTVVKVAIANG 472
Query: 479 LANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSK 538
LAN R+L++ + AGE Y F+EIMACPGGC+GGGGQPI ++ V+R +Y D+
Sbjct: 473 LANARKLMEQVRAGESPYHFIEIMACPGGCIGGGGQPITKANVKRVERIEAIYVEDEGLP 532
Query: 539 VRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
+R SH+N +K LY +F +P HK+H LLHT +
Sbjct: 533 LRKSHDNPEVKTLYEEFLHEPLGHKSHELLHTHY 566
>gi|51894344|ref|YP_077035.1| iron hydrogenase [Symbiobacterium thermophilum IAM 14863]
gi|51858033|dbj|BAD42191.1| iron hydrogenase [Symbiobacterium thermophilum IAM 14863]
Length = 596
Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats.
Identities = 263/595 (44%), Positives = 363/595 (61%), Gaps = 16/595 (2%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
+++LTID +S + T++EAA GI IP LC+LK IN+I ACR+C+VE+EG L T
Sbjct: 9 VIHLTIDRRPVSVEPGTTVLEAARQNGIHIPTLCYLKDINKIGACRMCLVEVEGARGLQT 68
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
AC EGMVV+TNSP VR R+ ++++LS H+ +C C+R+GNC L LA ++ ++
Sbjct: 69 ACTTPCTEGMVVHTNSPAVREARKLVLELLLSDHNIECPTCLRAGNCELMQLAQEMGVRT 128
Query: 121 VLYEEQLEDQPWD-KNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSG 179
V + D ++ + DS KC+ C RC+ VC ++Q ++ + G G + +
Sbjct: 129 VPLKGAHHQVHRDVESGAIAVDSSKCVLCQRCVAVCREVQGVSAISVTGRGFESRVAPFF 188
Query: 180 SRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHI 239
++ DA C+LCGQC CP GAL E D+TE WRA+ +P K VVVQ APA+R GE
Sbjct: 189 GVSLNDAACALCGQCTVVCPTGALTEYDETEAVWRALLDPTKHVVVQTAPAVRVQIGEPF 248
Query: 240 GLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSC 299
GL S K+ L+R+G D VFDT FSADLTIMEEA E I+R KG P+ TSC
Sbjct: 249 GLPPGAVSTGKMVAGLRRLGFDQVFDTVFSADLTIMEEATELIQRLQKG--GPLPLITSC 306
Query: 300 CPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKK 359
PGWV+F + +P+++ +LS+ KSP QMFGA+ K+Y+AEK G P D+ V++MPC AKK
Sbjct: 307 SPGWVKFAEHFFPNMLENLSTCKSPQQMFGALAKTYYAEKAGIDPADMVVVSVMPCTAKK 366
Query: 360 SEIDM-ELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIF 418
E + E+ Y D+D VLTTRE RM + A I +L + E D +GAG IF
Sbjct: 367 YEANRPEMRDSGY--QDVDYVLTTRELARMFRQAGIDLPSLPDEEFDNPLGIGTGAGTIF 424
Query: 419 GATGGVMEAALRTAYYAIM-GKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTS 477
G TGGVMEAALRTA + G P F+ VR + + EA+ TL L +AV +
Sbjct: 425 GTTGGVMEAALRTAAAWLEPGSPSPKIEFQEVRGIPFQ---VREATVTLDGVTLNVAVAN 481
Query: 478 GLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESG-----ELAVKRGSNLYF 532
GL L++ + AG K+Y F+EIM CPGGC+GGGGQPI G E+ + R ++LY
Sbjct: 482 GLGAAGWLMEEVSAGRKNYHFIEIMGCPGGCIGGGGQPIPAKGPDALDEVRLARIASLYT 541
Query: 533 IDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDHFIWEMPRSPKRDRKG 587
ID+ +R SHEN I+ +Y ++ KP S +AH LLHT H+ +P +R + G
Sbjct: 542 IDERMTIRRSHENPAIQQVYAEYLGKPGSERAHHLLHT-HYQARVPAGIRRRQPG 595
>gi|15642974|ref|NP_228016.1| NADP-reducing hydrogenase, subunit D, putative [Thermotoga maritima
MSB8]
gi|4980698|gb|AAD35293.1|AE001705_4 NADP-reducing hydrogenase, subunit D, putative [Thermotoga maritima
MSB8]
Length = 608
Score = 454 bits (1168), Expect = e-126, Method: Composition-based stats.
Identities = 252/572 (44%), Positives = 340/572 (59%), Gaps = 10/572 (1%)
Query: 2 VNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINE-IAACRVCVVELEGKEKLIT 60
V + I+ ++ +N+T++EA E AGI IP LC + E I ACRVCVVE+EG L
Sbjct: 30 VTVVINGRTLTVPDNLTVIEACEKAGIEIPALCHHPRLGESIGACRVCVVEVEGARNLQP 89
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
AC V +GMV+ T+S +V+ R+ + ++LS+H C C +G C Q L +++
Sbjct: 90 ACVTKVRDGMVIKTSSDRVKTARKFNLALLLSEHPNDCMTCEANGRCEFQDLIYKYDVEP 149
Query: 121 VLYEEQLEDQPWDKNFP-LIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSG 179
+ + ++ D++ P ++RD KCIKC RC++ C ++Q ++I+ + G RT
Sbjct: 150 I-FGYGTKEGLVDRSSPAIVRDLSKCIKCQRCVRACSELQGMHIYSMVERGHRTYPGTPF 208
Query: 180 SRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHI 239
+ + DC CGQC CP GA+ E + + +K++VVQ AP++R A GE
Sbjct: 209 DMPVYETDCIGCGQCAAFCPTGAIVENSAVKVVLEELEKKEKILVVQTAPSVRVAIGEEF 268
Query: 240 GLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSC 299
G S ++ AL+R+G DYVFDT F ADLTIMEE EF+ER KG+L+D PMFTSC
Sbjct: 269 GYAPGTISTGQMVAALRRLGFDYVFDTNFGADLTIMEEGSEFLERLEKGDLEDLPMFTSC 328
Query: 300 CPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKK 359
CPGWV ++ YP L + LSSAKSP M A++K+YFAEK+G KPEDIF V+IMPC AKK
Sbjct: 329 CPGWVNLVEKVYPELRTRLSSAKSPQGMLSAMVKTYFAEKLGVKPEDIFHVSIMPCTAKK 388
Query: 360 SE-IDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIF 418
E + +L +D VLTTRE ++++ I L E E D ++GA +F
Sbjct: 389 DEALRKQLMVNGVPA--VDVVLTTRELGKLIRMKKIPFANLPEEEYDAPLGISTGAAALF 446
Query: 419 GATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSG 478
G TGGVMEAALRTAY GK P F+ VR G+ EA L +RIAV G
Sbjct: 447 GVTGGVMEAALRTAYELKTGKALPKIVFEEVRGL----KGVREAEIDLDGKKIRIAVVHG 502
Query: 479 LANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSK 538
AN R L++ I E Y FVE+MACPGGC+GGGGQP E+ KR +Y ID+
Sbjct: 503 TANVRNLVEKILRREVKYHFVEVMACPGGCIGGGGQPYSRDPEILRKRAEAIYTIDERMT 562
Query: 539 VRYSHENECIKALYNDFFEKPNSHKAHSLLHT 570
+R SHEN IK LY ++ E P SHKAH LLHT
Sbjct: 563 LRKSHENPAIKKLYEEYLEHPLSHKAHELLHT 594
>gi|126701030|ref|YP_001089927.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
difficile 630]
gi|115252467|emb|CAJ70310.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
difficile 630]
Length = 593
Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats.
Identities = 249/582 (42%), Positives = 347/582 (59%), Gaps = 19/582 (3%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEI------AACRVCVVELEG 54
+VNLTI+ +SA +I++AA+ I I LC L +NEI A+CRVC+VE E
Sbjct: 3 LVNLTINGKHVSAPSGTSILDAAKLINIKIHNLCHLH-MNEIDKLDTCASCRVCMVETE- 60
Query: 55 KEKLITACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLAN 114
L+ AC ++EGM V TNS K RR V+++LS H C +C ++G+C LQT+A
Sbjct: 61 -RGLVPACGTVIKEGMKVQTNSAKALNARRTIVELLLSDHPQDCFVCEKNGDCELQTIAA 119
Query: 115 DLNIQDVLYEEQLEDQPWDKNF-PLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGART 173
DL ++ + Y+ D + L++D KCI C RC VC+ IQ++ G T
Sbjct: 120 DLGVRKIRYQGSKSFAGKDTSTKSLVKDHSKCILCRRCETVCNDIQTVGALSGVNRGFNT 179
Query: 174 TINVSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRT 233
++ + + + +C+ CGQCI+ CP GAL E D+ K W + +K +VVQVAPA+R
Sbjct: 180 LVSTFFNSDMVETECTFCGQCISVCPTGALTEVDNVPKLWDVLNKKEKTIVVQVAPAVRV 239
Query: 234 AWGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDK 293
A GE GL+ S K+ ALK +G ++VFDT F AD TIMEEA EFIER KGE +
Sbjct: 240 AIGEEFGLEPGSISTGKMVAALKALGFEHVFDTNFGADFTIMEEATEFIERIQKGE--NL 297
Query: 294 PMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKI-GKKPEDIFSVAI 352
P+ TSCCP WV F++ YP ++ SS KSP MFG++ K+Y+A KI G PE+++ V++
Sbjct: 298 PILTSCCPAWVNFLEHNYPDKLNLASSCKSPQGMFGSIAKNYYAPKILGINPEELYVVSV 357
Query: 353 MPCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDAS 412
MPCVAKK E E E D+D +TTRE +M+K A I L++ + D ++
Sbjct: 358 MPCVAKKYEASREEL-SESGILDVDLSITTRELAKMIKEAAIDLPNLQDQDFDNPLGKST 416
Query: 413 GAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLR 472
GA IFGA+GGV+EAALRT+Y I K F VR GI EAS + +
Sbjct: 417 GAASIFGASGGVLEAALRTSYEKITNKTLDNVNFTNVRGL----KGIREASIDVDGTTVN 472
Query: 473 IAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESG-ELAVKRGSNLY 531
+ + + L N R+++D + +GE Y +E+MACPGGCVGG GQP H E+ +R + LY
Sbjct: 473 VCIVNTLKNARKIMDKVRSGECKYHIIEVMACPGGCVGGAGQPYHHGNTEIVDRRANALY 532
Query: 532 FIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDHF 573
ID+N +R SHEN ++A+Y DFF +PNS AH LHT +F
Sbjct: 533 EIDRNKAIRKSHENPDLQAIYKDFFGEPNSDVAHKYLHTHYF 574
>gi|145952557|ref|ZP_01801566.1| hypothetical protein CdifQ_04003930 [Clostridium difficile
QCD-32g58]
Length = 593
Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats.
Identities = 248/582 (42%), Positives = 347/582 (59%), Gaps = 19/582 (3%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEI------AACRVCVVELEG 54
+VNLTI+ +SA +I++AA+ I I LC L +NEI A+CR+C+VE E
Sbjct: 3 LVNLTINGKHVSAPSGTSILDAAKLINIKIHNLCHLH-MNEIDKLDTCASCRICMVETE- 60
Query: 55 KEKLITACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLAN 114
L+ AC ++EGM V TNS K RR V+++LS H C +C ++G+C LQT+A
Sbjct: 61 -RGLVPACGTVIKEGMKVQTNSAKALNARRTIVELLLSDHPQDCFVCEKNGDCELQTIAA 119
Query: 115 DLNIQDVLYEEQLEDQPWDKNF-PLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGART 173
DL ++ + Y+ D + L++D KCI C RC VC+ IQ++ G T
Sbjct: 120 DLGVRKIRYQGSKSFAGKDTSTKSLVKDHSKCILCRRCETVCNDIQTVGALSGVNRGFNT 179
Query: 174 TINVSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRT 233
++ + + + +C+ CGQCI+ CP GAL E D+ K W + +K +VVQVAPA+R
Sbjct: 180 LVSTFFNSDMVETECTFCGQCISVCPTGALTEVDNVPKLWDVLNKKEKTIVVQVAPAVRV 239
Query: 234 AWGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDK 293
A GE GL+ S K+ ALK +G ++VFDT F AD TIMEEA EFIER KGE +
Sbjct: 240 AIGEEFGLEPGSISTGKMVAALKALGFEHVFDTNFGADFTIMEEATEFIERIQKGE--NL 297
Query: 294 PMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKI-GKKPEDIFSVAI 352
P+ TSCCP WV F++ YP ++ SS KSP MFG++ K+Y+A KI G PE+++ V++
Sbjct: 298 PILTSCCPAWVNFLEHNYPDKLNLASSCKSPQGMFGSIAKNYYAPKILGINPEELYVVSV 357
Query: 353 MPCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDAS 412
MPCVAKK E E E D+D +TTRE +M+K A I L++ + D ++
Sbjct: 358 MPCVAKKYEASREEL-SESGILDVDLSITTRELAKMIKEAAIDLPNLQDQDFDNPLGKST 416
Query: 413 GAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLR 472
GA IFGA+GGV+EAALRT+Y I K F VR GI EAS + +
Sbjct: 417 GAASIFGASGGVLEAALRTSYEKITNKTLDNVNFTNVRGL----KGIREASIDVDGTTVN 472
Query: 473 IAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESG-ELAVKRGSNLY 531
+ + + L N R+++D + +GE Y +E+MACPGGCVGG GQP H E+ +R + LY
Sbjct: 473 VCIVNTLKNARKIMDKVRSGECKYHIIEVMACPGGCVGGAGQPYHHGNTEIVDRRANALY 532
Query: 532 FIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDHF 573
ID+N +R SHEN ++A+Y DFF +PNS AH LHT +F
Sbjct: 533 EIDRNKAIRKSHENPDLQAIYKDFFGEPNSDVAHKYLHTHYF 574
>gi|154495355|ref|ZP_02034360.1| hypothetical protein PARMER_04412 [Parabacteroides merdae ATCC
43184]
gi|154085279|gb|EDN84324.1| hypothetical protein PARMER_04412 [Parabacteroides merdae ATCC
43184]
Length = 601
Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats.
Identities = 243/582 (41%), Positives = 354/582 (60%), Gaps = 15/582 (2%)
Query: 2 VNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLK-----GINEIAACRVCVVELEGKE 56
V L ID + + TI++AA+ GI IP LC++K N ACR+CVVE+EG+
Sbjct: 9 VKLIIDRKPVEVPKGTTILDAAKGMGIRIPTLCYMKLEDLHYENNPGACRICVVEIEGRR 68
Query: 57 KLITACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDL 116
L +C EGMVV T+SP+V R+ +++ILS H +C C +G+C LQ +A+DL
Sbjct: 69 NLAPSCKTECMEGMVVQTHSPRVMNARKTVMELILSNHPAECLTCSSNGHCELQAIAHDL 128
Query: 117 NIQDVLYEEQLEDQPWDKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTIN 176
I+++ Y+ ++ D++ ++R+ KCI C RC +C+ IQ++ G ++
Sbjct: 129 GIREIRYKGEMSTFQIDRSPSIVRNMNKCIMCRRCETMCNNIQTVGALTAVNRGFNAAVS 188
Query: 177 VSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWG 236
+ R IA + CS CGQC++ CPV AL R+ + A+A+PDK+V+ Q APA+RTA G
Sbjct: 189 TAFERDIAGSTCSYCGQCVSVCPVNALSGRNTQQPVLDALADPDKIVIAQTAPAVRTALG 248
Query: 237 EHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIER---FSKGELKDK 293
G + K+ AL+R+G DYVFDT F+ADLTIMEE E ++R + KG+ + K
Sbjct: 249 RDFGYEPGTLVTGKMVSALRRLGFDYVFDTDFAADLTIMEEGTELLQRIGKYLKGDQEVK 308
Query: 294 -PMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAI 352
P+ TSCCPGWV F++ +P L+ +LS+AKSP QMFGA+ KSYFAEK+G + I V+I
Sbjct: 309 MPLMTSCCPGWVSFVEQHFPELLDNLSTAKSPQQMFGAIAKSYFAEKLGVDRKRIVVVSI 368
Query: 353 MPCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDAS 412
MPC+AKK E F + D+D + TRE R+++ A+I L +++ D+ +++
Sbjct: 369 MPCLAKKYEASRPEFAVD-GNPDVDISIYTRELARLIRYANINFAELPDSDFDRPLGEST 427
Query: 413 GAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLR 472
GAG+IFG TGGV+EAA RTAY K P F+ +R GI A+ ++
Sbjct: 428 GAGVIFGTTGGVIEAACRTAYELYTKKTLPKIDFEELRGL----EGIRSATIDFDGTPIK 483
Query: 473 IAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESG-ELAVKRGSNLY 531
I + GL N RRL++ ++ G Y +E+MACPGGC+GGGGQP H E+ KR + LY
Sbjct: 484 IGIAHGLGNARRLVEEVKNGMSPYHAIEVMACPGGCIGGGGQPFHRGRMEVLRKRAAALY 543
Query: 532 FIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDHF 573
D++ +R SHEN I+ALY D+ +P +AH LLHT +F
Sbjct: 544 QEDRSKTLRKSHENPYIQALYADYLGEPCGPRAHKLLHTHYF 585
>gi|94448908|emb|CAJ44289.1| ferredoxin hydrogenase [Heliobacillus mobilis]
Length = 606
Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats.
Identities = 256/588 (43%), Positives = 352/588 (59%), Gaps = 25/588 (4%)
Query: 2 VNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLITA 61
V L ID + + T+++AA GI IP LC+L+ IN I ACRVC+VE+EG+ L +
Sbjct: 18 VRLEIDGRPVEIEAGKTVLDAAREVGITIPSLCYLREINAIGACRVCLVEIEGQRSLQAS 77
Query: 62 CNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQDV 121
C V EG+ VYTN+P+VR R+R V++ILS H +C C+R+ NC LQ +A++L I+ V
Sbjct: 78 CVYPVAEGLKVYTNTPRVRKARKRVVELILSDHSRECTSCIRNLNCELQNIADNLGIRRV 137
Query: 122 LYEEQLEDQPWDKNFPLIR-DSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGS 180
+ +N P IR D KCI C RC +C K+Q + + G T I + S
Sbjct: 138 EVHGEAHQLLIQENNPSIRHDPNKCIHCRRCENICAKVQENCVIAAQNRGFDTIIAPAFS 197
Query: 181 RTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIG 240
R + D DC +CGQC+ CPVGAL E++ + W+A+A+P VVVQ AP+I+ GE G
Sbjct: 198 RDMGDVDCIMCGQCVLSCPVGALTEKECIDDVWKALADPGVHVVVQTAPSIQVTLGEAFG 257
Query: 241 LDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCC 300
L + K+ AL+R+G + V T F+ADLTI+EEAYEF+ RF G+L P FTSCC
Sbjct: 258 LPVGTKVTGKMVAALRRLGFNQVLATDFAADLTIVEEAYEFLHRFQAGQL---PFFTSCC 314
Query: 301 PGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKS 360
P W++ ++ YP + +LS+ KSPM MFGA+ + + ++ E + SVA+MPC AKK
Sbjct: 315 PAWIKLVEHHYPQFIPNLSTCKSPMSMFGALTRYTYHQERNLPKEKVVSVAVMPCTAKKY 374
Query: 361 EIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGA 420
E +G D+D VLTTRE VRM++ A I L + D F + +GAG IFGA
Sbjct: 375 EAARPE-HGHDGRSDVDYVLTTRELVRMIREAGIEFSELPDEPFDSAFREVTGAGTIFGA 433
Query: 421 TGGVMEAALRTAYYAIMG-------KNCP-PDAFKVVRHSSQEESGIIEASFTLKENNLR 472
TGGVMEA LRT + ++G K P P F+ VR E G+ L E ++R
Sbjct: 434 TGGVMEATLRTTSWVLLGNGTGQSDKEKPAPIEFREVRG----EKGLKLLHVNLGEYDIR 489
Query: 473 IAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPI-----HESGELAVK-- 525
+AV G N RR++++I+AGE+ DFVE+MACPGGCVGGGGQPI H+ L +
Sbjct: 490 VAVAHGTGNARRVLEAIQAGER-IDFVEVMACPGGCVGGGGQPILGGRDHKKVSLDYRHD 548
Query: 526 RGSNLYFIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDHF 573
R LY ID + +RYSHEN ++ LY + P S AH LLHT+ +
Sbjct: 549 RADALYDIDSHKNLRYSHENPVVQLLYREILGHPGSELAHRLLHTEGY 596
>gi|147677712|ref|YP_001211927.1| hypothetical hydrogenase subunit [Pelotomaculum thermopropionicum
SI]
gi|146273809|dbj|BAF59558.1| hypothetical hydrogenase subunit [Pelotomaculum thermopropionicum
SI]
Length = 624
Score = 447 bits (1151), Expect = e-124, Method: Composition-based stats.
Identities = 254/581 (43%), Positives = 360/581 (61%), Gaps = 22/581 (3%)
Query: 2 VNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELE--GKEKLI 59
+ L ID ++ A++ M+++EAA AGI IP LC+L+ INEI +CRVC+VE+E G L
Sbjct: 29 IRLIIDGREVEAEKGMSVLEAARLAGIEIPSLCYLRRINEIGSCRVCLVEIEMKGTRTLQ 88
Query: 60 TACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQ 119
+C G+VVYTN+P+ R R+ V+++LS H +C C+R+ NC LQ L ++L I+
Sbjct: 89 ASCVYPASGGLVVYTNTPRARRVRKTMVELLLSDHHRECTTCIRNLNCELQNLTDNLGIR 148
Query: 120 DVLYEEQLEDQP-WDKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVS 178
++ Y +++ P +KN ++RD KCIKC RC +C K+Q +N++ G T I +
Sbjct: 149 NIRYTGEMKMLPVQNKNPFIVRDYNKCIKCRRCEAICSKVQEVNVYSALNRGYDTVIAPA 208
Query: 179 GSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEH 238
+ ++ C CGQC+ CP +L E++ + W A+ +P+K VVVQ AP+I+ GE
Sbjct: 209 FMQDLSRVACITCGQCVIACPTASLTEKECIDSVWEALEDPNKYVVVQTAPSIQVTLGEV 268
Query: 239 IGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFS-KGELKDKPMFT 297
G + K+ AL+R+G D VF T F+ADLTIMEEAYE +ER +G L P+ +
Sbjct: 269 FGYPVGTVVTGKVVAALRRLGFDKVFATDFTADLTIMEEAYELLERLEGRGRL---PLLS 325
Query: 298 SCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVA 357
SC PGWV+F + YP + +LS+ KSP +MFGA+ K+YFAEK G PE I VA+MPC A
Sbjct: 326 SCSPGWVKFAEHFYPEFLENLSTCKSPHEMFGALTKTYFAEKEGLDPEKIVVVAVMPCTA 385
Query: 358 KKSEIDM-ELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGI 416
KK E E+ G++ D+D VLTTRE RM++ A I L + + D ASGAG
Sbjct: 386 KKFEASRPEMGTGKF--KDVDWVLTTRELARMIRQAGINFRELPDEDYDTPMGIASGAGA 443
Query: 417 IFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVT 476
IFG+TGGV+EAA+RTAYY GK ++ R SGI EA LK +++A+
Sbjct: 444 IFGSTGGVIEAAVRTAYYLTTGKELDLLDYEEFRGF----SGIKEALVELKGRTIKVAIA 499
Query: 477 SGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPI---HESGELAV----KRGSN 529
G N R L+D ++AGEK +D+VEIMACPGGCVGGGGQPI E E+++ R
Sbjct: 500 HGTGNARILLDRMKAGEK-FDYVEIMACPGGCVGGGGQPIFGTREHKEISLDYRHNRADA 558
Query: 530 LYFIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHT 570
L ID + ++R +HEN +K +Y++F P S K+ LLHT
Sbjct: 559 LDRIDYSRELRRAHENPAVKKIYDEFLGHPLSEKSKKLLHT 599
>gi|150021476|ref|YP_001306830.1| hydrogenase, Fe-only [Thermosipho melanesiensis BI429]
gi|149793997|gb|ABR31445.1| hydrogenase, Fe-only [Thermosipho melanesiensis BI429]
Length = 582
Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats.
Identities = 240/575 (41%), Positives = 342/575 (59%), Gaps = 12/575 (2%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
M + ++ + + +T++EAAE G+ IP LC + I ACRVCVVE+EG L
Sbjct: 1 MAKIFLNGREYEVPDGLTVLEAAEKLGVKIPTLCHHPELEPIGACRVCVVEIEGARTLQP 60
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
AC + +GM + TNS +V + + +I++ H C C C L+ L + +++
Sbjct: 61 ACTTKITDGMKIKTNSDRVENAVKFNLSLIMANHPNDCMYCEADQRCELKKLVHKYDVRP 120
Query: 121 VLYEEQLEDQPWDKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGS 180
+ L D D + + RD +CIKC RC++VC +IQ +NI+ + G +T +
Sbjct: 121 IFNPTDLSDIFDDSSPSIQRDLSRCIKCQRCVRVCSEIQGMNIYSMVERGYKTVPQTAFD 180
Query: 181 RTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIG 240
+ + + +C CGQC CPVGA+ E D +K + + +K++V Q AP++R A GE G
Sbjct: 181 QPVYETECISCGQCAYLCPVGAIYETPDWKKVLKLLERKEKILVAQTAPSVRVALGEEFG 240
Query: 241 LDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCC 300
++ S K+ +LK++G DYVFDT F+ADLTI+EE E +ERF +G PMFTSCC
Sbjct: 241 MEPGSVSTGKMVASLKKLGFDYVFDTNFAADLTIVEEGTELVERFKEG--GPFPMFTSCC 298
Query: 301 PGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKS 360
PGW+ ++ YP + ++SSAKSP QM +V+K+YFA+KIG PEDI V++MPC AKK
Sbjct: 299 PGWINLLEKIYPEFIPNVSSAKSPQQMMSSVVKTYFAKKIGVDPEDIIMVSVMPCTAKKD 358
Query: 361 EI-----DMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAG 415
EI ++L G D V+TTRE +++K I L++ E D ++GA
Sbjct: 359 EIKRPQQKIKLEDGREI-QTTDYVITTRELAKLIKLKEINFAGLQDAEFDNPLGTSTGAA 417
Query: 416 IIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAV 475
IFG TGGVMEAALRTAY I K P F VR GI EA ++ +++A+
Sbjct: 418 AIFGVTGGVMEAALRTAYEVITNKELPKLEFTAVRGL----DGIREAEIDIEGKKVKVAI 473
Query: 476 TSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDK 535
G AN R+L+D I G+++YDF+EIMACPGGC+GGGGQP ++ KR +Y ID+
Sbjct: 474 AHGTANVRKLLDDIRDGKRYYDFIEIMACPGGCIGGGGQPKSLDPDILKKRAMAIYSIDE 533
Query: 536 NSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHT 570
S +R SHEN I+ LY +F EKPNSH AH LLHT
Sbjct: 534 LSTLRKSHENPDIQKLYEEFLEKPNSHIAHELLHT 568
>gi|154248935|ref|YP_001409760.1| hydrogenase, Fe-only [Fervidobacterium nodosum Rt17-B1]
gi|154152871|gb|ABS60103.1| hydrogenase, Fe-only [Fervidobacterium nodosum Rt17-B1]
Length = 586
Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats.
Identities = 253/581 (43%), Positives = 343/581 (59%), Gaps = 22/581 (3%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
MV + I++ EN T++E A+ G IP LC + I ACR+CVVE+EG L
Sbjct: 1 MVTVYINDKPYEVSENKTVLEVAQELGYYIPTLCHHPELEPIGACRICVVEVEGARTLQP 60
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
AC V +GM + TN+ +V + + +I++ H +C C G C LQ L + +I+
Sbjct: 61 ACTTKVSDGMKIRTNTERVESAVKFNLSLIMANHPHECMYCEADGRCELQKLVHMYDIKP 120
Query: 121 VLYEEQLEDQPWDKNFPLI-RDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSG 179
+ D+ D + P I R+ KCIKC RC++VC +IQ +NI+ + G +
Sbjct: 121 IFGVNVDMDKEIDISSPSINRELSKCIKCQRCVRVCSEIQGMNIYSMVDRGYESLPETEF 180
Query: 180 SRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVAN------PDKVVVVQVAPAIRT 233
+ + +C CGQC CPVGA+ E D W+ V N P KV V Q AP++R
Sbjct: 181 GIPVYETNCISCGQCAYLCPVGAIYEAPD----WKKVLNLLNKKEPGKVYVAQTAPSVRV 236
Query: 234 AWGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDK 293
A GE G++ S K+ AL+R+G DYVFDT F+ADLTIMEE YE I R G
Sbjct: 237 AIGEEFGVEPGTVSTGKMVAALRRLGFDYVFDTNFAADLTIMEEGYELIHRLQNG--GKF 294
Query: 294 PMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIM 353
PMFTSCCPGWV ++ ++P L +LS+AKSP QM +V+K+YFA+KIG KPEDI V++M
Sbjct: 295 PMFTSCCPGWVNEMEKEWPELRENLSTAKSPQQMMSSVVKTYFAQKIGVKPEDIVMVSVM 354
Query: 354 PCVAKKSEID--MELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDA 411
PC AKK EI +L G D V+TTRE +++K I L E + D +
Sbjct: 355 PCTAKKDEITRPQQLVDGIKV---TDYVITTRELGKLIKLKGIPFVNLPEEQYDSPLGTS 411
Query: 412 SGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNL 471
+GAG +FG TGGVMEAALRTAY I G+ P F VR G+ EA +K L
Sbjct: 412 TGAGALFGVTGGVMEAALRTAYEVITGEKLPKLVFDSVRGL----DGVREAEIDIKGKKL 467
Query: 472 RIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLY 531
R+A+ G+AN +RL+ ++ G+++YDFVEIMAC GGC+GGGGQP + ++ KR + +Y
Sbjct: 468 RVAIAHGMANVKRLLAEMKEGKRYYDFVEIMACYGGCIGGGGQPKNLDPDILKKRAAAIY 527
Query: 532 FIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
ID+ S +R SHEN I LY +F EKPNSHKAH LLHT +
Sbjct: 528 SIDELSVLRRSHENPDIIKLYEEFLEKPNSHKAHHLLHTHY 568
>gi|150007689|ref|YP_001302432.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis
ATCC 8503]
gi|149936113|gb|ABR42810.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis
ATCC 8503]
Length = 596
Score = 441 bits (1133), Expect = e-122, Method: Composition-based stats.
Identities = 242/583 (41%), Positives = 347/583 (59%), Gaps = 16/583 (2%)
Query: 2 VNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLK-----GINEIAACRVCVVELEGKE 56
+ L IDN ++ TI++AA+S GI IP LC++K N ACR+CVVE+EG+
Sbjct: 4 IQLIIDNKEVEVPRGTTILDAAKSVGIHIPTLCYMKLEDLHYENNPGACRICVVEIEGRR 63
Query: 57 KLITACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDL 116
L +C EGMVV T++P+V RR +++ILS H +C C +G+C LQ +A+DL
Sbjct: 64 NLAPSCKMECTEGMVVRTHTPRVMNARRTVMELILSNHPAECLTCSSNGHCELQKIAHDL 123
Query: 117 NIQDVLYEEQLEDQPWDKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTIN 176
I+++ Y+ ++ D++ ++R+ KCI C RC +C+ IQ++ G ++
Sbjct: 124 GIREIRYKGEMSTFTIDRSPSIVRNMNKCIMCRRCETMCNTIQTVGALTAVNRGFNAAVS 183
Query: 177 VSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWG 236
+ R +A + CS CGQC++ CPV AL R+ + A+A+P K+V+ Q APA+RTA G
Sbjct: 184 TAFERDMAGSTCSYCGQCVSVCPVNALSGRNTQQPVLDALADPTKIVIAQTAPAVRTALG 243
Query: 237 EHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDK--- 293
G + K+ AL+++G DYVFDT F+ADLTIMEE E + R DK
Sbjct: 244 RDFGYEPGTLVTGKMVSALRQLGFDYVFDTDFAADLTIMEEGTELLHRLGSYLNGDKEVK 303
Query: 294 -PMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAI 352
P+ TSCCPGWV F++ +P L +LS+AKSP QMFGA+ KSYFAEK+G +D+ V+I
Sbjct: 304 IPLMTSCCPGWVSFVEQHFPELRDNLSTAKSPQQMFGAIAKSYFAEKLGVDRKDLVVVSI 363
Query: 353 MPCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDAS 412
MPC+AKK E F E D+D + TRE R+++ A+I L + E D +++
Sbjct: 364 MPCLAKKYEASRPEFSVE-GNPDVDYSIYTRELARLIRYANIDFNELPDGEFDSPLGEST 422
Query: 413 GAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLR 472
GA +IFG TGGV+EAA RTAY KN F+ +R GI A+ ++
Sbjct: 423 GASVIFGTTGGVIEAACRTAYELYTKKNLDKVDFEELRGL----EGIRSATIDFNGTPVK 478
Query: 473 IAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESG-ELAVKRGSNLY 531
I + GL N R+LI+ ++ G Y +E+MACPGGC+GGGGQP H E+ +R S LY
Sbjct: 479 IGIAHGLGNARKLIEEVKNGTSPYHAIEVMACPGGCIGGGGQPFHRGRMEVLRRRASALY 538
Query: 532 FIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDHFI 574
D N +R SHEN I+ LY+++ +P KAH LLHT H+I
Sbjct: 539 REDANKPLRKSHENPYIQQLYSEYLGEPCGPKAHKLLHT-HYI 580
>gi|134301119|ref|YP_001114615.1| hydrogenases, Fe-only [Desulfotomaculum reducens MI-1]
gi|134053819|gb|ABO51790.1| hydrogenases, Fe-only [Desulfotomaculum reducens MI-1]
Length = 594
Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats.
Identities = 235/583 (40%), Positives = 347/583 (59%), Gaps = 19/583 (3%)
Query: 2 VNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFL-----KGINEIAACRVCVVEL---- 52
++++I++ +++ E +TI+EAA AG+ IP LC L + N+ A+CRVC+VEL
Sbjct: 14 IHVSINDQELTVPEGITILEAAHEAGVKIPTLCHLDLHDFQLYNKTASCRVCMVELVDAR 73
Query: 53 EGKEKLITACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTL 112
+ KL+ +C V+EGM+V T++ + RR V+++LS H +C C ++ C LQ L
Sbjct: 74 NNRNKLVPSCVTKVQEGMMVRTDTIRAIQARRMAVELLLSNHPNECFTCPKNLECELQAL 133
Query: 113 ANDLNIQDVLYEEQLEDQPWD-KNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGA 171
A++LN++ + +E + D P D + +++D+ KCI C RC C+++Q+ I G G
Sbjct: 134 ADELNVRKIRWEGERMDYPKDMSSDAIVKDANKCIYCRRCETACNEVQTCGILSGIGRGF 193
Query: 172 RTTINVSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAI 231
+ + + ++ C+ CGQC+ CP AL E T+K W A+ +PDK V+VQ APA+
Sbjct: 194 NAFVGPFANIPMVESSCTYCGQCVMVCPTAALTEVYHTDKVWEAINDPDKHVIVQTAPAV 253
Query: 232 RTAWGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELK 291
R A GE G++ K+ ALKR+G D VFDT F ADLTIMEEA E I R K
Sbjct: 254 RVALGELFGMEAGTVVTGKMVTALKRMGFDEVFDTDFGADLTIMEEASELIYRLKNN--K 311
Query: 292 DKPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVA 351
P+ T+CCP WV+FI+ Q+P L+ S+ KSP MFG + K+Y+AEK G P++I V+
Sbjct: 312 TLPILTNCCPAWVKFIEHQFPELIHVPSTCKSPHIMFGTIAKTYYAEKNGLDPDNIVVVS 371
Query: 352 IMPCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDA 411
+MPC+AKK+E + A +++D V+TTRE M+K A I L ++E D ++
Sbjct: 372 VMPCIAKKAEAKRPELTKD-AHNNVDIVITTRELGAMIKEAGIEFVKLPDSEFDSPLGES 430
Query: 412 SGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNL 471
+GA +IFG GGV+EAALRTA + GK F+ +R G+ A+ + + L
Sbjct: 431 TGASVIFGTAGGVIEAALRTASEWMTGKPLDRVEFEELRGM----EGVRRATVKIGDQEL 486
Query: 472 RIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESG-ELAVKRGSNL 530
+I + SGL N R +++ I G Y +EIMACPGGC+ GGGQP H E+ KR +
Sbjct: 487 KIGIASGLGNARHILEDIRDGRADYHAIEIMACPGGCIAGGGQPYHHGNHEIIKKRREAI 546
Query: 531 YFIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDHF 573
Y D+ KVR SHEN+ I LY ++ +P AH LLHT HF
Sbjct: 547 YEEDRRKKVRKSHENKEILELYKNYLGEPFGKLAHELLHT-HF 588
>gi|77919232|ref|YP_357047.1| NAD-reducing iron-only hydrogenase large subunit [Pelobacter
carbinolicus DSM 2380]
gi|77545315|gb|ABA88877.1| NAD-reducing iron-only hydrogenase large subunit [Pelobacter
carbinolicus DSM 2380]
Length = 585
Score = 431 bits (1108), Expect = e-119, Method: Composition-based stats.
Identities = 247/583 (42%), Positives = 339/583 (58%), Gaps = 15/583 (2%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFL-----KGINEIAACRVCVVELEGK 55
M+N+TID TI++AA+ + IP LCFL K N A+CR+CVVE+E +
Sbjct: 3 MMNITIDGKATQVPAGSTILDAAKKLDVHIPTLCFLQMDEMKFNNMTASCRICVVEVEKR 62
Query: 56 EKLITACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLAND 115
L AC V +GMVV TN+ +V RR ++++LS H C +C +SG+C LQ LA
Sbjct: 63 RNLAPACATPVMDGMVVKTNTIRVLNARRSVLELMLSDHPKDCLVCAKSGDCELQNLAEY 122
Query: 116 LNIQDVLYEEQLEDQPWDKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTI 175
I++V + D + +IRD KCI C RC +C+ +Q+ + G +
Sbjct: 123 FGIREVGVAGAMSTYREDVSPSIIRDMDKCILCRRCETMCNDVQTCGVLSGVNRGFDAVV 182
Query: 176 NVSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAW 235
+ + D C+ CGQC CPVGAL E D T K A+A+P+KV VVQ APA+R A
Sbjct: 183 APAFEMNLYDTVCTNCGQCTAVCPVGALVENDHTWKVIDAIADPEKVTVVQTAPAVRAAL 242
Query: 236 GEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDK-- 293
GE G++ + K+ AL+R+G D+VFDT F+ADLTIMEE EF++R K DK
Sbjct: 243 GEACGMEPGQSVTGKMAAALRRLGFDHVFDTDFAADLTIMEEGSEFLDRLQKFLDGDKNV 302
Query: 294 --PMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVA 351
P+ TSCCPGWV+F + Q+P ++ S+AKSP QMFGA+ KSY+AE +G E + V+
Sbjct: 303 RLPIMTSCCPGWVKFFEHQFPDMLDVPSTAKSPQQMFGAIAKSYYAEILGIPREKMVVVS 362
Query: 352 IMPCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDA 411
+MPC+AKK E F D+D V++TRE R++K +I L + + D +
Sbjct: 363 VMPCLAKKYECSRPEF-AVNGNPDVDIVISTRELGRLIKRMNIDFAKLPDEDFDAPLGAS 421
Query: 412 SGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNL 471
+GA IFG +GGVMEAALRTAY G+ P F+ VR +G+ A + + L
Sbjct: 422 TGAAPIFGNSGGVMEAALRTAYELATGETLPAVEFEAVR----TLTGVKTAEIQVGPHTL 477
Query: 472 RIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESG-ELAVKRGSNL 530
+ V SGL N R+L++ + GEK + +EIMACPGGC+GGGGQP H E+ KR L
Sbjct: 478 NVGVASGLGNARKLLEMVRNGEKQFHVIEIMACPGGCIGGGGQPYHHGDMEILAKRNQVL 537
Query: 531 YFIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDHF 573
Y D ++R SHEN I LY + KP S KAH LLHT +F
Sbjct: 538 YNEDAGKELRKSHENPYIIELYEKYLGKPLSEKAHHLLHTHYF 580
>gi|106893586|ref|ZP_01360711.1| Ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding:Iron hydrogenase,
small subunit:Hydrogenase large subunit-like
[Clostridium sp. OhILAs]
gi|106775322|gb|EAT31881.1| Ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding:Iron hydrogenase,
small subunit:Hydrogenase large subunit-like
[Clostridium sp. OhILAs]
Length = 567
Score = 426 bits (1094), Expect = e-117, Method: Composition-based stats.
Identities = 222/568 (39%), Positives = 339/568 (59%), Gaps = 15/568 (2%)
Query: 4 LTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLITACN 63
+ +D K+ ++E AGI +P C+ ++ ACR+C+VE E + +C+
Sbjct: 5 MIVDGRKVEFDREKNVLEVVRKAGINLPTFCYHSELSIYGACRMCIVEDE-RGNTFASCS 63
Query: 64 NSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQDVLY 123
+GM ++TN+PK+R R+ ++MIL+ H+ C C R+G C LQ LA I+D+ +
Sbjct: 64 QLPSDGMKIFTNTPKIRKYRKTILEMILANHERDCTACDRTGICELQDLAIRFGIKDIRF 123
Query: 124 EEQLEDQPWDKN-FPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRT 182
+E + P DK+ ++R+ KCI C C++VC+++Q + G+ T+ + +R
Sbjct: 124 DETRKHLPIDKSSLSIVRNPNKCILCGDCVRVCEEMQGVGALSFAYRGSSMTVTPAFNRD 183
Query: 183 IADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLD 242
IA+ +C CGQC CP GA+ +++ ++ W V + K V+ QVAPA+R A GE GL+
Sbjct: 184 IAEVNCVNCGQCRNVCPTGAIIIKNENDRVWEVVNDRSKRVIAQVAPAVRVALGEEFGLE 243
Query: 243 LKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCCPG 302
+ ++ KI ALK IG D V+DTAF+AD+T++EE+ EF+ER S GE D P+FTSCCPG
Sbjct: 244 PGEVTIGKIVAALKAIGIDEVYDTAFAADMTVIEESKEFMERLSLGE--DLPLFTSCCPG 301
Query: 303 WVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFA-EKIGKKPEDIFSVAIMPCVAKKSE 361
WV+F ++++P ++ H+SS KSP QMFGAV+K Y+ EK + ++ +++MPC AKK+E
Sbjct: 302 WVKFAENKFPDMMDHVSSCKSPQQMFGAVLKEYYKNEKNNAEGKETVVISVMPCTAKKAE 361
Query: 362 IDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGAT 421
E F E D+D V+TT+E ++K A I+ L+E D F ASG+GIIFGAT
Sbjct: 362 AAREEFEQE-GIRDVDFVITTQELALLIKEAGIIFHQLEEESFDMPFGLASGSGIIFGAT 420
Query: 422 GGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLAN 481
GGV EA + + FK VR + EA F + +++A+ GL N
Sbjct: 421 GGVTEAVVTRLLKDKPDHSTKDILFKEVRGLEN----LKEAVFNVDGKEVKVAIVHGLKN 476
Query: 482 TRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSKVRY 541
T LI I+AGE++YDF+E+MACPGGCV GGGQPI + E+ +R LY +D+ S ++
Sbjct: 477 TDELIKQIKAGERYYDFIEVMACPGGCVAGGGQPIPVNAEMRRERAKGLYKLDRTSHIKS 536
Query: 542 SHENECIKALYNDFFEKPNSHKAHSLLH 569
S +N + +L+ + H LLH
Sbjct: 537 SDKNPIVASLFEGILK-----DNHDLLH 559
>gi|156107991|gb|EDO09736.1| hypothetical protein BACOVA_05602 [Bacteroides ovatus ATCC 8483]
Length = 588
Score = 424 bits (1091), Expect = e-117, Method: Composition-based stats.
Identities = 246/584 (42%), Positives = 342/584 (58%), Gaps = 18/584 (3%)
Query: 2 VNLTIDNIKISAKENMTIMEAAESAGIPIPKLCF--LKGI---NEIAACRVCVVELEGKE 56
+ L ID I+ E TI+EAA GI IP LC LKG N A+CR+CVVE+ G+
Sbjct: 6 ITLQIDGHFITVPEGSTILEAAIKIGINIPTLCHIDLKGTCIKNNPASCRICVVEVMGRR 65
Query: 57 KLITACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDL 116
L AC EGMVV T++ +V R+ ++ILS H C C + GNC LQTLA
Sbjct: 66 NLAPACATRCTEGMVVKTSTLRVMNARKVVAELILSDHPNDCLTCPKCGNCELQTLALRF 125
Query: 117 NIQDVLYEE-QLEDQPWDKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTI 175
NI+++ + +L + + ++R+ KCI C RC VC+ +Q++ G TTI
Sbjct: 126 NIREMPFNGGELSPRKREITASIVRNMDKCIFCRRCESVCNDVQTVGALGAIRRGFNTTI 185
Query: 176 NVSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAW 235
+ R + +++C+ CGQC+ CPVGAL ERD T +ANPDKVV+VQ APA+R A
Sbjct: 186 APAFDRMMTESECTYCGQCVAVCPVGALTERDYTNHLLDDLANPDKVVIVQTAPAVRAAL 245
Query: 236 GEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDK-- 293
GE G K+ AL+ +G DYVFDT F+ADLTIMEE E + R ++ DK
Sbjct: 246 GEEFGFPPGTLVTGKMVYALRELGFDYVFDTDFAADLTIMEEGSEILNRLTRYLNGDKSV 305
Query: 294 --PMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVA 351
P+ TSCCP WV F + +P ++ S+A+SP QMFG++ KSY+AEK+G E + V+
Sbjct: 306 RLPILTSCCPAWVNFFEHHFPDMLDIPSTARSPQQMFGSIAKSYWAEKMGIPREKLVVVS 365
Query: 352 IMPCVAKKSEIDMELFYGEYAG-HDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHD 410
IMPC+AKK E + F + G D+D ++TRE R++K A+I + ++ D +
Sbjct: 366 IMPCLAKKYECARDEF--KVNGIPDVDYSISTRELARLIKRANIGFPLVLDSPFDNPMGE 423
Query: 411 ASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENN 470
++GAG+IFG TGGVMEAALR+ Y G+ F+ VR +G+ A+ L
Sbjct: 424 STGAGVIFGTTGGVMEAALRSVYEIYTGEPLKNVNFEQVRGL----NGVRRATINLNGFE 479
Query: 471 LRIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHE-SGELAVKRGSN 529
L++ + GL N R L++ I G Y +EIMACPGGC+GGGGQP+H + E+ R +
Sbjct: 480 LKVGIAHGLGNARHLLEDIRNGHNEYHVIEIMACPGGCIGGGGQPLHHGNSEILYARANA 539
Query: 530 LYFIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDHF 573
LY D N +R SHEN IK LY D+ KP K+ +LLHT +F
Sbjct: 540 LYREDANKPLRKSHENPYIKTLYEDYLGKPLGEKSETLLHTHYF 583
>gi|77919204|ref|YP_357019.1| NAD-reducing iron-only hydrogenase large subunit [Pelobacter
carbinolicus DSM 2380]
gi|77545287|gb|ABA88849.1| NAD-reducing iron-only hydrogenase large subunit [Pelobacter
carbinolicus DSM 2380]
Length = 585
Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats.
Identities = 247/583 (42%), Positives = 337/583 (57%), Gaps = 15/583 (2%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFL-----KGINEIAACRVCVVELEGK 55
M+N+TID TI++AA+ + IP LCFL K N A+CR+CVVE+E +
Sbjct: 3 MMNITIDGKATQVPAGSTILDAAKKLDVHIPTLCFLQMDEMKFNNMTASCRICVVEVEKR 62
Query: 56 EKLITACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLAND 115
L AC V +GMVV TN+ +V RR ++++LS H C +C +SGNC LQ LA
Sbjct: 63 RNLAPACATPVMDGMVVKTNTIRVLNARRSVLELMLSDHPKDCLVCAKSGNCELQDLAEA 122
Query: 116 LNIQDVLYEEQLEDQPWDKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTI 175
+I+++ + D + +IRD KCI C RC +C+ +Q+ I G +
Sbjct: 123 FDIREIGVSGAMSTYRRDASPAIIRDMDKCILCRRCETMCNDVQTCGILSGVDRGFNAVV 182
Query: 176 NVSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAW 235
+ D+ C+ CGQC CPVGAL ERD T A+A+P+KV VVQ APA+R A
Sbjct: 183 APPFEMNLEDSACTFCGQCAAVCPVGALVERDHTWDVVTALADPEKVTVVQTAPAVRAAL 242
Query: 236 GEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSK---GELKD 292
GE G++ + K+ AL++IG D+VFDT F+ADLTIMEE EF++R ++ G+
Sbjct: 243 GEEFGIEAGTSVTGKMVAALRQIGFDHVFDTDFAADLTIMEEGSEFLDRLTRHLDGDTSV 302
Query: 293 K-PMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVA 351
K P+ TSCCP WV+F + Q+P L+ S+AKSPMQMFGAV KSY+AE +G E + V+
Sbjct: 303 KLPIMTSCCPAWVKFFEHQFPDLLDVPSTAKSPMQMFGAVAKSYYAELLGIPREKMVVVS 362
Query: 352 IMPCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDA 411
IMPC+AKK E F + D+D L+TRE R++K +I L + + D +
Sbjct: 363 IMPCLAKKYECSRPEFMVD-GNPDVDITLSTRELARLIKLMNIEFNALPDEDFDAPLGYS 421
Query: 412 SGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNL 471
+GA +IFG TGGV+EAALRTAY G+ F+ VR G+ A + + L
Sbjct: 422 TGAAVIFGVTGGVIEAALRTAYELHTGEKLDKVDFEDVRGM----DGVKSAKVQVGSHTL 477
Query: 472 RIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESG-ELAVKRGSNL 530
I V L N R+L++ I G+ Y +EIM+CPGGC+GGGGQP H EL KR + +
Sbjct: 478 NIGVAHKLGNARKLLEEIREGKSQYHAIEIMSCPGGCIGGGGQPYHHGDVELLKKRTAAI 537
Query: 531 YFIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDHF 573
Y D R SHEN I LY + KP S KAH LLHT +F
Sbjct: 538 YDEDLAKPERKSHENPYIVELYEKYLGKPLSEKAHHLLHTHYF 580
>gi|29345534|ref|NP_809037.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides
thetaiotaomicron VPI-5482]
gi|29337426|gb|AAO75231.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides
thetaiotaomicron VPI-5482]
Length = 588
Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats.
Identities = 243/583 (41%), Positives = 342/583 (58%), Gaps = 16/583 (2%)
Query: 2 VNLTIDNIKISAKENMTIMEAAESAGIPIPKLCF--LKGI---NEIAACRVCVVELEGKE 56
+ L ID I+ E TI+EAA GI IP LC LKG N A+CR+CVVE+ G+
Sbjct: 6 ITLQIDGHFITVPEGSTILEAACKIGINIPTLCHIDLKGTCIKNNPASCRICVVEVAGRR 65
Query: 57 KLITACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDL 116
L AC EGMVV T++ +V R+ ++ILS H C C + GNC LQTLA
Sbjct: 66 NLAPACATRCTEGMVVKTSTLRVMNARKVVAELILSDHPNDCLTCPKCGNCELQTLALRF 125
Query: 117 NIQDVLYEE-QLEDQPWDKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTI 175
NI+++ + +L + + ++R+ KCI C RC VC+ +Q++ G TTI
Sbjct: 126 NIREMPFNGGELSPRKREVTSSIVRNMDKCIFCRRCESVCNDVQTVGALGAIRRGFNTTI 185
Query: 176 NVSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAW 235
+ R + D++C+ CGQC+ CPVGAL ERD T + +A+PDK+V+VQ APA+R A
Sbjct: 186 APAFDRMMKDSECTYCGQCVAVCPVGALTERDYTNRLLDDLADPDKIVIVQTAPAVRAAL 245
Query: 236 GEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDK-- 293
GE GL K+ AL+ +G DYVFDT F+ADLTIMEE E + R ++ DK
Sbjct: 246 GEEFGLPPGTLVTGKMVYALRELGFDYVFDTDFAADLTIMEEGSEILNRLTRYLDGDKSV 305
Query: 294 --PMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVA 351
P+ TSCCP WV F + +P ++ S+A+SP QMFG++ KSY+AEK+G E + V+
Sbjct: 306 RLPILTSCCPAWVNFFEHHFPDMLDIPSTARSPQQMFGSIAKSYWAEKMGIPREKLVVVS 365
Query: 352 IMPCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDA 411
IMPC+AKK E D + F D+D ++TRE R++K A+I + ++ D ++
Sbjct: 366 IMPCLAKKYECDRDEFKVN-GVPDVDYSISTRELARLIKRANIGFTLVLDSPFDNPMGES 424
Query: 412 SGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNL 471
+GAG+IFG TGGVMEAALR+ Y G+ F+ VR SG+ A+ L L
Sbjct: 425 TGAGVIFGTTGGVMEAALRSVYEIYTGQPLKNVNFEQVRGL----SGVRRATIDLNGFEL 480
Query: 472 RIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHE-SGELAVKRGSNL 530
++ + GL N R L++ I G Y +EIMACPGGC+GGGGQP+H + ++ R + L
Sbjct: 481 KVGIAHGLGNARHLLEDIRNGHNEYHVIEIMACPGGCIGGGGQPLHHGNSDVLYARANAL 540
Query: 531 YFIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDHF 573
Y D N +R SH+N I+ LY ++ KP K+ LLHT +F
Sbjct: 541 YREDANKPLRKSHDNPYIQKLYEEYLGKPLGEKSEMLLHTHYF 583
>gi|145621664|ref|ZP_01777633.1| hydrogenase, Fe-only [Petrotoga mobilis SJ95]
gi|144948301|gb|EDJ83328.1| hydrogenase, Fe-only [Petrotoga mobilis SJ95]
Length = 569
Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats.
Identities = 238/578 (41%), Positives = 355/578 (61%), Gaps = 18/578 (3%)
Query: 2 VNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLITA 61
+ + I+N + ++I++A + A I IP LC+ + + +CR+C VE++G+ L A
Sbjct: 1 MKVKINNREYEFDHEISILDATKKAHIKIPTLCYSEKLEPFGSCRLCSVEIKGERTLKPA 60
Query: 62 CNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQH----DCKCAICVRSGNCTLQTLANDLN 117
C + +GM ++T+S +VR R+ +++I++ H + C C +SG+C ++ +A ++
Sbjct: 61 CVTKITDGMEIFTHSQRVRKTRKTIIELIIASHGINCNLNCLTCSKSGSCEIKEVAEEIG 120
Query: 118 IQDVLYEEQLEDQPWDKN-FPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTIN 176
+ ++ P D++ + ++R+ +KCI C RC++ C ++QS+NI + G T +
Sbjct: 121 VTEIRVPPISNGLPEDRSSYSVVREPQKCIVCNRCVRKCSEVQSVNILTIANRGPDTYVT 180
Query: 177 VSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWG 236
+ + + DC+ CGQCI CP GAL E ++ W A+++ K V+VQ APA+R A
Sbjct: 181 TFMDKGMGNVDCTNCGQCILECPTGALHEVYQMDQVWTALSDESKYVIVQTAPAVRVAIA 240
Query: 237 EHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERF-SKGELKDKPM 295
E + + ++ L+ +G D VFDT F+ADLTIMEEA EFIERF + G+L P+
Sbjct: 241 EEFDAEPGKIATKQMVAGLRLLGFDKVFDTNFAADLTIMEEANEFIERFKNNGKL---PL 297
Query: 296 FTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPC 355
FTSC PGWV+F++ YP + +LSS KSP QMFGA+ K+Y+A K+G ED+ V++MPC
Sbjct: 298 FTSCSPGWVKFLEHNYPEFIDNLSSCKSPQQMFGAIAKTYYANKLGISKEDMVVVSVMPC 357
Query: 356 VAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAG 415
AKK E E G D+D VLTTRE +M K A I + E D+ +SGAG
Sbjct: 358 TAKK----FERVRPEIKG-DVDYVLTTRELAKMFKLAGIDLLNVPPEEYDEPLGISSGAG 412
Query: 416 IIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAV 475
IFGATGGVMEAALRTAY I GK F+ VR GI EA+ + NL++AV
Sbjct: 413 AIFGATGGVMEAALRTAYEVITGKELEKLDFEAVRGI----EGIKEATVEIDGINLKVAV 468
Query: 476 TSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDK 535
+GL N R++++ I++GEK Y FVE MACPGGC+GGGGQPI + E+ +KR +Y +D+
Sbjct: 469 VNGLGNARKVLEMIKSGEKEYHFVEFMACPGGCIGGGGQPIPTNSEILLKRMQAIYEVDR 528
Query: 536 NSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDHF 573
+ +R SHEN IK LY +F +P S K+H LLHT +
Sbjct: 529 SLPIRKSHENPAIKILYEEFLGEPLSEKSHELLHTTYL 566
>gi|145623074|ref|ZP_01779022.1| hydrogenase, Fe-only [Petrotoga mobilis SJ95]
gi|144946526|gb|EDJ81570.1| hydrogenase, Fe-only [Petrotoga mobilis SJ95]
Length = 578
Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats.
Identities = 250/581 (43%), Positives = 338/581 (58%), Gaps = 15/581 (2%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCF--LKGIN---EIAACRVCVVELEGK 55
M + I++ + A E T++ A + G IP LC+ LK IN + ++CRVC+VE+EG+
Sbjct: 1 MPKVYINDGEFLASEKDTVLTAVQKFGGYIPTLCYMNLKDINIENKPSSCRVCMVEIEGR 60
Query: 56 EKLITACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLAND 115
L AC V EGM + T+S RR VQ++LS H C C ++G C LQ +A++
Sbjct: 61 RTLAPACTTPVFEGMRIKTHSRMAVEARRTAVQLLLSDHPQDCLKCPKNGECELQKIASE 120
Query: 116 LNIQDVLYEEQLEDQPWDKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTI 175
LNI + Y + + D + +IRD KCI C RC +C++ Q++ + G +
Sbjct: 121 LNIVNNPYFGKTSNYDLDISAAIIRDPNKCIMCRRCETMCNEFQTVGVLSAIDRGFGAVV 180
Query: 176 NVSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAW 235
S + + C+ CGQC+ CP GAL ER ++ W+ + N +K VVVQ APA+R A
Sbjct: 181 KPSFDMPLEETACTFCGQCVAVCPTGALVERSYIDEVWKELENEEKHVVVQTAPAVRVAL 240
Query: 236 GEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPM 295
E G + S K+ ALK +G D VFDT F ADLTIMEEA EF ER G PM
Sbjct: 241 AEEFGYEPGTISTGKLVGALKLMGFDKVFDTNFGADLTIMEEATEFKERLENGGF--LPM 298
Query: 296 FTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPC 355
TSCCPGWV+FI+ Q+P L+ SSAKSP QMFGA+ KSY+A+K P+ I V+IMPC
Sbjct: 299 LTSCCPGWVKFIEHQFPDLLEMPSSAKSPQQMFGAIAKSYYAQKNDIDPKKITVVSIMPC 358
Query: 356 VAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAG 415
+AKK E E D+D VLTTRE +M+K A I + + E E D +++GA
Sbjct: 359 LAKKYEAAREEINASPEYRDVDYVLTTRELAKMIKEAGINFKAVPEREYDSPLGESTGAA 418
Query: 416 IIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAV 475
IFG TGGV EAALRTAY I G F+ + H + I A + LR+ V
Sbjct: 419 AIFGRTGGVAEAALRTAYEWITGNELKEVEFEQL-HGYES---IRVAEVEINGKKLRVGV 474
Query: 476 TSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAV--KRGSNLYFI 533
GL N R+L++ +++G+ +EIMACPGGCVGGGGQP H G+ V KR L +
Sbjct: 475 AYGLGNARKLLEDVQSGKIDLHLIEIMACPGGCVGGGGQPYHH-GDFNVIKKRIEALNVV 533
Query: 534 DKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDHFI 574
DK+ +R SHEN I LYN++ EKP S K+H LLHT H++
Sbjct: 534 DKSKIIRKSHENPSIVRLYNEYLEKPGSEKSHQLLHT-HYV 573
>gi|150385266|ref|ZP_01923911.1| hydrogenase, Fe-only [Victivallis vadensis ATCC BAA-548]
gi|150258358|gb|EDM95636.1| hydrogenase, Fe-only [Victivallis vadensis ATCC BAA-548]
Length = 676
Score = 421 bits (1081), Expect = e-116, Method: Composition-based stats.
Identities = 225/569 (39%), Positives = 343/569 (60%), Gaps = 10/569 (1%)
Query: 4 LTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLITACN 63
LT++N ++ + ++E AGI IP C+ ++ ACR+C+V+++G+ ++ +C+
Sbjct: 8 LTVNNTEVEFSDERNLLEVIRKAGIDIPTFCYHSELSIYGACRLCLVDIKGR-GIMASCS 66
Query: 64 NSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQDVLY 123
E GMVV T++ +R R+ V+++L+ H+ +C C RS NCTLQ LA L ++DV Y
Sbjct: 67 IKPEPGMVVQTDTKAIRNMRKINVELLLASHNRECPTCQRSANCTLQDLARKLGVKDVRY 126
Query: 124 EEQLEDQPWDKNFP-LIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRT 182
++ ++ P D + P L+RD KC+ C C++VC ++QS+ + G+ + +
Sbjct: 127 KQTQKNLPLDTSSPSLVRDPNKCVLCGDCVRVCSEVQSVGALDFASRGSNARVVPAFDND 186
Query: 183 IADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLD 242
+++ +C CGQC CP GA+ + D +K W A+ +P+KVVVVQVAPA+R GE G
Sbjct: 187 LSEGECVNCGQCAQVCPTGAIVAKSDADKVWEAIYDPEKVVVVQVAPAVRVGLGERFGFK 246
Query: 243 LKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCCPG 302
+ K+ A+K +G D+V+DT F+AD+TI EEA EFIER + G PMFTSCCP
Sbjct: 247 TGENVARKMVTAMKMMGFDHVYDTCFAADMTIFEEATEFIERLTTG--GKLPMFTSCCPA 304
Query: 303 WVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEI 362
WV+F ++ YP ++ ++S+ +SP +FGAV + K+G KPE++ V++MPC AKK E
Sbjct: 305 WVKFAETFYPEMLPNVSTTRSPQAIFGAVARKTLPAKLGVKPENLVVVSVMPCTAKKFEA 364
Query: 363 DMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATG 422
+ F + ++D VLTT E M++S I + L+ D ++G G+IFGATG
Sbjct: 365 QLPKFKRD-GRPEVDYVLTTVELASMIESMGIKLDELEPAAFDMPLGFSTGGGVIFGATG 423
Query: 423 GVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLANT 482
GVMEAALR A + G+ FK R + + EA+ + LRIAV GLAN
Sbjct: 424 GVMEAALRFAVEKVSGEPLEEIDFKETRGLAPRK----EATLEVAGKQLRIAVVHGLANA 479
Query: 483 RRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSKVRYS 542
R+L++ I+AG+ +DF+E+MACPGGCV GGGQPI KR + LY DK +V+
Sbjct: 480 RKLVEEIKAGKAQFDFIEVMACPGGCVAGGGQPITSEDGFRSKRAAGLYDTDKERQVQKP 539
Query: 543 HENECIKALYNDFF-EKPNSHKAHSLLHT 570
+N + Y + F +P SH+AH+ LHT
Sbjct: 540 QDNYWVDKCYAEAFGGRPGSHEAHTRLHT 568
>gi|39933211|ref|NP_945487.1| hydrogenase gamma-fused hydrogenase large and small subunit
[Rhodopseudomonas palustris CGA009]
gi|39652836|emb|CAE25578.1| hydrogenase gamma-fused hydrogenase large and small subunit
[Rhodopseudomonas palustris CGA009]
Length = 619
Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats.
Identities = 227/585 (38%), Positives = 344/585 (58%), Gaps = 23/585 (3%)
Query: 2 VNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEI-AACRVCVVEL--EGKE-- 56
+ L+I+ + + N TI+ A + IP LC L+ I+ ACRVC+VE+ GK+
Sbjct: 19 ITLSINGVACAGFANETILSCARRYDVYIPTLCELEDIDHTPGACRVCLVEILQAGKDTP 78
Query: 57 KLITACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDL 116
+++TACN V +GM V T S K R +R V+++++ H CA C+R G+C LQ LA +
Sbjct: 79 QIVTACNTPVRDGMEVQTRSKKARDMQRLQVELLMADHLQDCATCIRHGSCELQDLAQFV 138
Query: 117 NIQDVLY--EEQLEDQPWDKNFP-LIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGART 173
+Q + E+ E +P D + P ++RD ++C++C RC+ +C Q ++ +EG+G
Sbjct: 139 GLQQNRFFDRERTEARPVDHSSPSMVRDMRRCVRCQRCVAICRYHQKIDALAIEGSGLER 198
Query: 174 TINVSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRT 233
+ + + ++ C CGQC+ CP GAL ERD+T++ + +P+ V VVQ APA+R
Sbjct: 199 MVALRDADGYPNSVCVSCGQCVLVCPTGALGERDETDRALDYICDPNVVTVVQFAPAVRV 258
Query: 234 AWGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDK 293
A+GE GL +I A +++G D V DT F+AD+ IMEE E + R +G +
Sbjct: 259 AFGEEFGLPAGTNVEGQIIAACRKLGVDVVLDTNFAADVVIMEEGAELLARLKQGR---R 315
Query: 294 PMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIM 353
P FTSCCP W+ F + YP ++ LSS KSP Q+ + KSY ++G E I ++IM
Sbjct: 316 PTFTSCCPAWINFAEIHYPDVLPLLSSTKSPQQVLSTIAKSYLPAQLGVPAERIRVISIM 375
Query: 354 PCVAKKSE-IDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDA- 411
PC+AKK E + ++ + + D VLTTREF R+L+ I + L ++ D+ F A
Sbjct: 376 PCIAKKDEAVRPQMVHD--GQPETDLVLTTREFARLLRREGIDLKDLPSSQFDRPFLSAY 433
Query: 412 SGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKE--N 469
SGAG IFG TGGVMEAA+RT Y + G+ +R G+ EA+ L
Sbjct: 434 SGAGAIFGTTGGVMEAAVRTIYALVNGRELERIELTQLRGF----EGLREATVDLGAPVG 489
Query: 470 NLRIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESG--ELAVKRG 527
+++A+ GL +TR+L++S+ +GE +YDF+E+MACPGGCV GGG + LA+KR
Sbjct: 490 EVKVAMVHGLGDTRKLVESVLSGEANYDFIEVMACPGGCVDGGGSLRSKKAYLPLALKRR 549
Query: 528 SNLYFIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
+Y +D+ +KVR SH N ++ALY + + PNS AH LLHT +
Sbjct: 550 ETIYNVDRAAKVRQSHNNPQVQALYRELLQAPNSEIAHRLLHTHY 594
>gi|466366|gb|AAA87057.1| potential NAD-reducing hydrogenase subunit
Length = 585
Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats.
Identities = 246/584 (42%), Positives = 338/584 (57%), Gaps = 17/584 (2%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLK----GINEIAA-CRVCVVELEGK 55
M+ +TID S E TI++AA++ I IP LC+L IN AA CRVCVVE+EG+
Sbjct: 3 MLTITIDGKTTSVPEGSTILDAAKTLDIDIPTLCYLNLEALSINNKAASCRVCVVEVEGR 62
Query: 56 EKLITACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLAND 115
L +C V + MVV TNS +V RR ++++LS H C +C +SG C LQTLA
Sbjct: 63 RNLAPSCATPVTDNMVVKTNSLRVLNARRTVLELLLSDHPKDCLVCAKSGECELQTLAER 122
Query: 116 LNIQDVLYEE-QLEDQPWDKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTT 174
I++ Y+ ++ D + +IRD KCI C RC +C+ +Q+ + G
Sbjct: 123 FGIRESPYDGGEMSHYRKDISASIIRDMDKCIMCRRCETMCNTVQTCGVLSGVNRGFTAV 182
Query: 175 INVSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTA 234
+ + +AD C+ CGQC+ CP GAL E + + A+ANPDKVV+VQ APA+R A
Sbjct: 183 VAPAFEMNLADTVCTNCGQCVAVCPTGALVEHEYIWEVVEALANPDKVVIVQTAPAVRAA 242
Query: 235 WGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDK- 293
GE +G+ + K+ AL+R+G D+VFDT F+ADLTIMEE EF++R K D
Sbjct: 243 LGEDLGVAPGTSVTGKMAAALRRLGFDHVFDTDFAADLTIMEEGSEFLDRLGKHLAGDTN 302
Query: 294 ---PMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSV 350
P+ TSCCPGWV+F + Q+P ++ S+AKSP QMFGA+ K+Y+A+ +G E + V
Sbjct: 303 VKLPILTSCCPGWVKFFEHQFPDMLDVPSTAKSPQQMFGAIAKTYYADLLGIPREKLVVV 362
Query: 351 AIMPCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHD 410
++MPC+AKK E F D+D V+TTRE +++K +I L + + D
Sbjct: 363 SVMPCLAKKYECARPEF-SVNGNPDVDIVITTRELAKLVKRMNIDFAGLPDEDFDAPLGA 421
Query: 411 ASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENN 470
++GA IFG TGGV+EAALRTAY G+ F+ VR G+ +A + +N
Sbjct: 422 STGAAPIFGVTGGVIEAALRTAYELATGETLKKVDFEDVRGM----DGVKKAKVKVGDNE 477
Query: 471 LRIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESG-ELAVKRGSN 529
L I V GL N R L+ AGE + +E+MACPGGC+GGGGQP H EL KR
Sbjct: 478 LVIGVAHGLGNARELLKPCGAGET-FHAIEVMACPGGCIGGGGQPYHHGDVELLKKRTQV 536
Query: 530 LYFIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDHF 573
LY D +R SHEN I LY F KP S ++H LLHT +F
Sbjct: 537 LYAEDAGKPLRKSHENPYIIELYEKFLGKPLSERSHQLLHTHYF 580
>gi|150388476|ref|YP_001318525.1| hydrogenase, Fe-only [Alkaliphilus metalliredigens QYMF]
gi|149948338|gb|ABR46866.1| hydrogenase, Fe-only [Alkaliphilus metalliredigens QYMF]
Length = 582
Score = 416 bits (1068), Expect = e-114, Method: Composition-based stats.
Identities = 238/580 (41%), Positives = 343/580 (59%), Gaps = 17/580 (2%)
Query: 2 VNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFL-----KGINEIAACRVCVVELEGKE 56
V++TI++ K+ TI+ AA AG+ IP LC L K +N A+CRVC+VE+
Sbjct: 5 VSVTINDKKVKVPREYTILNAAIEAGVKIPTLCHLDLHDLKMVNRTASCRVCMVEVADSP 64
Query: 57 KLITACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDL 116
+L AC V++GM++ T++ + RR +V+++LS H C IC R+ C LQ+LA +L
Sbjct: 65 RLAPACATPVKDGMIIRTDTYRAIKARRTSVELLLSNHPTDCLICQRNLKCELQSLAKEL 124
Query: 117 NIQDVLYEEQLEDQPWDKNF-PLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTI 175
N++++ Y + D + +I++ KCI C RC C++IQ+ I G T +
Sbjct: 125 NVREIHYSGKRNKYHLDTSSQAVIKNQDKCILCRRCETACNEIQTCGILSALNRGFDTVV 184
Query: 176 NVSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAW 235
+ + + + C+ CGQC+ CP AL E + T K W+A+ +PDK VVVQ APAIR A
Sbjct: 185 GPAFNLPMVETSCTYCGQCVAVCPTAALTEVNHTRKVWKALHDPDKYVVVQTAPAIRVAL 244
Query: 236 GEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPM 295
GE G++ K+ +L+R+G D V+DT F AD+TIMEEA E I+R G PM
Sbjct: 245 GELFGMEAGSLVTGKLAASLRRLGFDQVYDTDFGADVTIMEEAKELIDRLENG--GRLPM 302
Query: 296 FTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPC 355
TSCCP WV FI+ Q+P +V SS KSP MFG + K+Y AEK+G P+ + V+IMPC
Sbjct: 303 LTSCCPAWVSFIEHQFPDMVDIPSSCKSPHIMFGTIAKTYLAEKMGIDPKKMVVVSIMPC 362
Query: 356 VAKKSE-IDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGA 414
VAKK+E EL ++ ++D V+TTRE MLK A I + L + + D +++GA
Sbjct: 363 VAKKAEAARTELSIDDH--DNVDIVITTRELGDMLKEAGIDFDKLADEDYDHPLGESTGA 420
Query: 415 GIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIA 474
+IFG TGGV+EAA+RTAY I G+ F H + G+ EA+ LK ++I
Sbjct: 421 SVIFGTTGGVIEAAMRTAYEWITGEELEQVEF----HQLRGMDGLREATVDLKGREIKIG 476
Query: 475 VTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVK-RGSNLYFI 533
+ GL N R+L++ I G+ Y +EIMACPGGC+GGGGQP H + VK R +LY
Sbjct: 477 IAHGLGNARQLLEDIRNGKSEYHAIEIMACPGGCIGGGGQPYHYGNDEVVKARQRSLYKE 536
Query: 534 DKNSKVRYSHENECIKALYNDFFEKP-NSHKAHSLLHTDH 572
D+ K+R SHEN + +Y ++ +P AH LLHT +
Sbjct: 537 DQGKKIRKSHENPEVIKMYEEYLGEPFYGELAHKLLHTKY 576
>gi|488597|gb|AAA85785.1| hydrogenase-1 [Clostridium saccharobutylicum]
Length = 574
Score = 414 bits (1065), Expect = e-114, Method: Composition-based stats.
Identities = 233/576 (40%), Positives = 326/576 (56%), Gaps = 14/576 (2%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
M+N+ ID I +EN T+++AA + GI IP LC+L + C VC VE+EGK L
Sbjct: 1 MINIVIDEKTIQVQENTTVIQAALANGIDIPSLCYLNECGNVGKCGVCAVEIEGKNNLAL 60
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQ- 119
AC VEEGMVV TNS KV+ + V +L +H+ KC C R NC L +
Sbjct: 61 ACITKVEEGMVVKTNSEKVQERVKMRVATLLDKHEFKCGPCPRRENCEFLKLVIKTKAKA 120
Query: 120 DVLYEEQLEDQPWD-KNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVS 178
+ + + + Q D ++ ++ D KC+ C RC C + + + + +
Sbjct: 121 NKPFVVEDKSQYIDIRSKSIVIDRTKCVLCGRCEAACKTKTGTGAISICKSESGRIVQAT 180
Query: 179 GSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEH 238
G + D +C LCGQC+ CPVGAL E+ ++ A+ +P+K V+V +AP+IRT+ GE
Sbjct: 181 GGKCFDDTNCLLCGQCVAACPVGALTEKTHVDRVKEALEDPNKHVIVAMAPSIRTSMGEL 240
Query: 239 IGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTS 298
L K++ +++ +G D VFD F AD+TIMEEA EFIER PMFTS
Sbjct: 241 FKLGYGVDVTGKLYASMRALGFDKVFDINFGADMTIMEEATEFIERVKNN--GPFPMFTS 298
Query: 299 CCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAK 358
CCP WVR +++ YP + +LSSAKSP Q+FGA K+Y+ + G +D+F+V IMPC AK
Sbjct: 299 CCPAWVRQVENYYPEFLENLSSAKSPQQIFGAASKTYYPQISGISAKDVFTVTIMPCTAK 358
Query: 359 KSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIF 418
K E D E Y E ++D VLTTRE +M+K A I L++ + D + +GAG+IF
Sbjct: 359 KFEADREEMYNE-GIKNIDAVLTTRELAKMIKDAKINFANLEDEQADPAMGEYTGAGVIF 417
Query: 419 GATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSG 478
GATGGVMEAALRTA + K+ + +R GI EA+ + N +AV +G
Sbjct: 418 GATGGVMEAALRTAKDFVEDKDLTDIEYTQIRGL----QGIKEATVEIGGENYNVAVING 473
Query: 479 LANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQP-----IHESGELAVKRGSNLYFI 533
AN ++S + EK+Y F+E+MACPGGCV GGGQP E ++ R S LY
Sbjct: 474 AANLAEFMNSGKILEKNYHFIEVMACPGGCVNGGGQPHVSAKEREKVDVRTVRASVLYNQ 533
Query: 534 DKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLH 569
DKN + R SH+N + +Y D+ P KAH LLH
Sbjct: 534 DKNLEKRKSHKNTALLNMYYDYMGAPGQGKAHELLH 569
>gi|74229867|gb|ABA00462.1| Fe-hydrogenase large subunit [Ethanoligenens harbinense]
Length = 347
Score = 414 bits (1065), Expect = e-114, Method: Composition-based stats.
Identities = 194/351 (55%), Positives = 254/351 (72%), Gaps = 4/351 (1%)
Query: 159 QSLNIWELEGTGARTTINVSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVAN 218
Q +NIW++ TG+RTT++VS +R + ++DC+LCGQCITHCPVGALRERDDT+K + A+A+
Sbjct: 1 QDMNIWDIANTGSRTTVDVSQNRKMEESDCTLCGQCITHCPVGALRERDDTDKAFAALAD 60
Query: 219 PDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEA 278
PD + VVQ+APA+R AWGE +GL + A+ ++ AL++IG Y+FDT FSADLTIMEE
Sbjct: 61 PDTITVVQIAPAVRAAWGESLGLPREQATAKRLVAALRKIGFRYIFDTTFSADLTIMEEG 120
Query: 279 YEFIERFSKGELKDKPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAE 338
EF+ + E + PMFTSCCPGWVRF+KSQYP +V LS+AKSP QMFGA+ KSY+A+
Sbjct: 121 SEFLAKLRNRENETFPMFTSCCPGWVRFLKSQYPDMVRQLSTAKSPQQMFGAITKSYYAK 180
Query: 339 KIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPET 398
+ +PE I S+++MPC+AKK E + AG D+D VLTTRE RM+++ I P
Sbjct: 181 LLDVEPERICSISVMPCLAKKQEAALPTMDTAGAGPDVDIVLTTREIDRMIRAEDIHPGE 240
Query: 399 LKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESG 458
L E E D+ SGAG+IFGATGGVMEAALR+AYY + GKN PDAF VR G
Sbjct: 241 LPEEEFDQPLGVGSGAGVIFGATGGVMEAALRSAYYLVTGKNPEPDAFGNVRGM----DG 296
Query: 459 IIEASFTLKENNLRIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCV 509
EA+ + +R+AV SGL N RRL++++ G+ YDFVEIMACPGGC+
Sbjct: 297 WKEAAIDIAGTTVRVAVASGLGNARRLVEALRKGDVQYDFVEIMACPGGCI 347
>gi|115525856|ref|YP_782767.1| hydrogenases, Fe-only [Rhodopseudomonas palustris BisA53]
gi|115519803|gb|ABJ07787.1| hydrogenases, Fe-only [Rhodopseudomonas palustris BisA53]
Length = 619
Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats.
Identities = 223/583 (38%), Positives = 341/583 (58%), Gaps = 19/583 (3%)
Query: 2 VNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEI-AACRVCVVEL--EGKE-- 56
++LTI+ +A + TI+ A I +P LC L+ I+ ACR+C+VE+ GK+
Sbjct: 19 ISLTINGQACTAFPDETILACARRYDIYVPTLCELEDIDHTPGACRICLVEIVQAGKDAS 78
Query: 57 KLITACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDL 116
+++T+CN V +GM V T S K R +R V+++++ H CA C+R G+C LQ +A +
Sbjct: 79 QIVTSCNTPVRDGMDVQTRSRKARDMQRLQVELLMADHLQDCATCIRHGSCELQDVAQYV 138
Query: 117 NIQD--VLYEEQLEDQPWDKNFP-LIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGART 173
+++ L E +P D P +IRD ++C++C RC+ +C Q ++ +EG+G
Sbjct: 139 GLKENRFLDRAMTEARPVDLTSPSMIRDMRRCVRCQRCVAICRYHQKIDALAIEGSGLDR 198
Query: 174 TINVSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRT 233
+ + ++ + C CGQC+ CP GAL ERD+T++ + +P+ V VVQ APA+R
Sbjct: 199 VVALRDAKDYPSSVCVSCGQCVLVCPTGALGERDETDRALDYICDPNLVTVVQFAPAVRV 258
Query: 234 AWGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDK 293
A+GE G+ ++ A ++IG D V DT F+AD+ IMEE E + R +G +
Sbjct: 259 AFGEEFGMPAGTNVEGQVIAACRKIGIDVVLDTNFAADVVIMEEGAELLSRLKQGR---R 315
Query: 294 PMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIM 353
P FTSCCP W+ F + YP ++ LSS KSP Q+ + K+Y EK+G + I ++IM
Sbjct: 316 PTFTSCCPAWINFAEINYPEILPLLSSTKSPQQVLSTLAKTYLPEKLGIPADRIRVISIM 375
Query: 354 PCVAKKSE-IDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDA- 411
PC+AKK E + +L + + D VLTTREF R+L+ I +T++ + D F
Sbjct: 376 PCIAKKDEAVRPQLSHD--GQPETDVVLTTREFARLLRREGIDLKTIERSNFDTPFMSGY 433
Query: 412 SGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNL 471
SGAG IFG TGGVMEAALRT Y + G+ +R + ++ + E +
Sbjct: 434 SGAGAIFGTTGGVMEAALRTIYAIVNGRELERIELTQLRGFERLREATVDLGGAVGE--V 491
Query: 472 RIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESG--ELAVKRGSN 529
++A+ GL +TR L++++ AG+ YDF+E+MACPGGCV GGG + LA+KR
Sbjct: 492 KVAMVHGLGDTRALVEAVLAGKADYDFIEVMACPGGCVDGGGSLRSKKAYLPLALKRRET 551
Query: 530 LYFIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
+Y +D+ +KVR SH N ++ALY + E PNS KAH LLHT +
Sbjct: 552 IYNVDRTAKVRQSHNNPQVQALYRELLEAPNSEKAHHLLHTHY 594
>gi|89210553|ref|ZP_01188941.1| Ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding:Iron hydrogenase,
small subunit:Hydrogenase large subunit, C-terminal
[Halothermothrix orenii H 168]
gi|89159815|gb|EAR79475.1| Ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding:Iron hydrogenase,
small subunit:Hydrogenase large subunit, C-terminal
[Halothermothrix orenii H 168]
Length = 666
Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats.
Identities = 225/570 (39%), Positives = 331/570 (58%), Gaps = 9/570 (1%)
Query: 4 LTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLITACN 63
L I+ ++ ++E GI +P C+ ++ ACR+C+VE E +I C+
Sbjct: 5 LVINGKTVAINGEKNLLELIRKQGIELPTFCYHSELSVYGACRMCLVE-EENMGIIATCS 63
Query: 64 NSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQDVLY 123
+ + GM + T+SP+V+ R+ ++++L+ HD C C R+GNC LQ LA I +V +
Sbjct: 64 TAPQPGMNIKTHSPRVQRIRKMALELLLANHDRDCTTCSRNGNCKLQDLAQRFGIDEVRF 123
Query: 124 EEQLEDQPWDKNFP-LIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRT 182
+ E P D + P ++R+ KCI C C++ C +IQ + + + G+++ + + ++
Sbjct: 124 GTREEVLPVDNSSPSIVRNPNKCILCGDCVRTCQEIQGIGVLDFANRGSKSIVAPAFNKD 183
Query: 183 IADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLD 242
+ + DC CGQC+ CP GAL + D + W A+ +P K VVVQ+APA+R A GE G++
Sbjct: 184 LIEVDCVACGQCVAVCPTGALTIKSDISRVWEAINDPAKTVVVQIAPAVRVAIGEEFGME 243
Query: 243 LKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCCPG 302
+ + ++ ALKR+G D VFDT+F+ADLT+MEE EFIERF +G K P FTSCCP
Sbjct: 244 PGEIQMGQLVAALKRLGFDKVFDTSFAADLTVMEETAEFIERFKEG--KKLPQFTSCCPA 301
Query: 303 WVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEI 362
WV++ + + +LSS KSP QMFG+V K ++++ +G PED+ V+IMPC AKK E
Sbjct: 302 WVKYAEEYAQDFLDNLSSCKSPQQMFGSVAKRFYSQDLGIDPEDMVVVSIMPCTAKKFEA 361
Query: 363 DMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATG 422
F + D+D V+TT+E M+K + ++ L D ++GAG+IFG TG
Sbjct: 362 QRPEFITD-GVPDVDVVITTQEVASMIKKSGLVFSELGIESLDMPLGFSTGAGVIFGVTG 420
Query: 423 GVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLANT 482
GV EA LR AY I G N FK VR GI EA L +R+AV GL+N
Sbjct: 421 GVSEAVLRNAYEKITGDNLDDVEFKEVRGF----DGIKEAEVELDGKTVRLAVVHGLSNV 476
Query: 483 RRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSKVRYS 542
LI +I+ GEK YD +E+MACPGGC+GGGGQP + E+ KR +Y DK S + S
Sbjct: 477 GDLIKAIKKGEKEYDLIEVMACPGGCIGGGGQPTPNNTEVREKRAQGMYNCDKLSALHKS 536
Query: 543 HENECIKALYNDFFEKPNSHKAHSLLHTDH 572
EN + Y +F + NS H LHT +
Sbjct: 537 QENPMVNDFYRRWFGEENSDVTHKHLHTSY 566
>gi|149384911|gb|ABR25256.1| hydrogenase [Clostridium butyricum]
Length = 574
Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats.
Identities = 230/584 (39%), Positives = 325/584 (55%), Gaps = 30/584 (5%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
M+NL ID + E +I++AA GI IP LC+LK + + C VC VE+EGK+ L
Sbjct: 1 MINLIIDEKNVQVPEGTSIIQAALDNGIDIPSLCYLKECSNVGKCGVCAVEVEGKKVLSL 60
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
AC VEEGMVV TN+ + + V +L +H+ KC C R C L
Sbjct: 61 ACLTKVEEGMVVRTNTEATQERVKMRVAALLDKHEFKCGPCPRRETCEFLKL-------- 112
Query: 121 VLYEEQLEDQPW----------DKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTG 170
V+ + ++P+ D++ + D KC+ C RC+ C + E+ G G
Sbjct: 113 VIKTKAKANKPFLPTDKTEFLDDRSKSITIDRSKCVLCGRCVAACKEKTGTGNIEISGKG 172
Query: 171 ARTTINVSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPA 230
+ + + +C LCGQC+ CPV AL E+ ++ A+ +P+K V+V +APA
Sbjct: 173 PDRKVQAIEGKCFDETNCLLCGQCVAACPVAALNEKPHIDRVKEALEDPNKHVIVAMAPA 232
Query: 231 IRTAWGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGEL 290
+RT+ GE + K++ +L+++G D VFD F AD+TIMEEA EFIER +
Sbjct: 233 VRTSMGELFKMGYGVDVTGKLYSSLRQLGFDKVFDINFGADMTIMEEATEFIERINNN-- 290
Query: 291 KDKPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSV 350
PMFTSCCP WVR ++ YP L+ +LSSAKSP Q+FGA K+Y+ G P+ +++V
Sbjct: 291 GPFPMFTSCCPAWVRQAENYYPELLGNLSSAKSPQQIFGAASKTYYPTVEGLDPKSVYTV 350
Query: 351 AIMPCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHD 410
IMPC AKK E D E ++D VLTTRE +M+K A I TL++ + D +
Sbjct: 351 TIMPCTAKKYEADRTEMENE-GLRNIDAVLTTRELAKMIKDAKINFATLEDEKADPAMGE 409
Query: 411 ASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENN 470
+GAG+IFGATGGVMEAALRTA + K+ +K VR GI EA+ + N
Sbjct: 410 YTGAGVIFGATGGVMEAALRTAKDFVEDKDLIDIEYKQVRGL----DGIKEATVEIGGKN 465
Query: 471 LRIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQP-----IHESGELAVK 525
+AV +G AN + ++ + EK Y FVE+M+CPGGCV GGGQP ++ +
Sbjct: 466 YNVAVINGSANLTKFVEGGQMDEKQYHFVEVMSCPGGCVNGGGQPHVAAKDRDTANVRAV 525
Query: 526 RGSNLYFIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLH 569
R S LY DK + R SH+NE + +YN++ P HKAH LLH
Sbjct: 526 RASVLYNQDKTAVKRKSHKNEALMKMYNEYMGMPGQHKAHELLH 569
>gi|120602429|ref|YP_966829.1| hydrogenases, Fe-only [Desulfovibrio vulgaris subsp. vulgaris DP4]
gi|120562658|gb|ABM28402.1| hydrogenases, Fe-only [Desulfovibrio vulgaris subsp. vulgaris DP4]
Length = 606
Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats.
Identities = 229/587 (39%), Positives = 333/587 (56%), Gaps = 26/587 (4%)
Query: 2 VNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEI-AACRVCVVEL----EGKE 56
+N I+ ++ + TI+EAA G IP LC L I CRVC+VE+ E
Sbjct: 1 MNAFINGKEVRCEPGRTILEAARENGHFIPTLCELADIGHAPGTCRVCLVEIWRDKEAGP 60
Query: 57 KLITACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDL 116
+++T+C VEEGM ++T +P+VR +R V+++L+ HD CA C R G+C LQ +A +
Sbjct: 61 QIVTSCTTPVEEGMRIFTRTPEVRRMQRLQVELLLADHDHDCAACARHGDCELQDVAQFV 120
Query: 117 NIQDVL--YEEQLEDQPWDKNFP-LIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGART 173
+ + + + D + P ++RD KCI+C+RC+ VC +Q ++ + G G T
Sbjct: 121 GLTGTRHHFPDYARSRTRDVSSPSVVRDMGKCIRCLRCVAVCRNVQGVDALVVTGNGIGT 180
Query: 174 TINVSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRT 233
I + +R+ + +DC CGQC CPVGAL RDD E+ + +P+ V V Q APA+R
Sbjct: 181 EIGLRHNRSQSASDCVGCGQCTLVCPVGALAGRDDVERVIDYLYDPEIVTVFQFAPAVRV 240
Query: 234 AWGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDK 293
GE GL + ++ AL+ +GAD V DT F+ADL IMEE E ++R G
Sbjct: 241 GLGEEFGLPPGSSVEGQVPTALRLLGADVVLDTNFAADLVIMEEGTELLQRLRGG--AKL 298
Query: 294 PMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIM 353
P+FTSCCPGWV F + P ++ H+S+ +SP Q GA+ K+Y A + PE + V++M
Sbjct: 299 PLFTSCCPGWVNFAEKHLPDILPHVSTTRSPQQCLGALAKTYLARTMNVAPERMRVVSLM 358
Query: 354 PCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEP----DKLFH 409
PC AKK E F + D+D VLTTREF R+L+ I L EP D L
Sbjct: 359 PCTAKKEEAARPEFRRD-GVRDVDAVLTTREFARLLRREGI---DLAGLEPSPCDDPLMG 414
Query: 410 DASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKEN 469
A+GA +IFG TGGVMEAALRT Y+ + GK P V H+ + + EA L E
Sbjct: 415 RATGAAVIFGTTGGVMEAALRTVYHVLNGKELAP----VELHALRGYENVREAVVPLGEG 470
Query: 470 N--LRIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGE--LAVK 525
N +++AV GL R++++++ AG+ + FVE+MACPGGC+ GGGQP + A
Sbjct: 471 NGSVKVAVVHGLKAARQMVEAVLAGKADHVFVEVMACPGGCMDGGGQPRSKRAHNPNAQA 530
Query: 526 RGSNLYFIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
R + L+ +D + +R SH N I +Y F +P S+ +H LLHT +
Sbjct: 531 RRAALFSLDAENALRQSHNNPLIGKVYESFLGEPCSNLSHRLLHTRY 577
>gi|46580181|ref|YP_010989.1| [Fe] hydrogenase gamma [Desulfovibrio vulgaris subsp. vulgaris str.
Hildenborough]
gi|40828|emb|CAA40970.1| Hyd gamma [Desulfovibrio vulgaris]
gi|46449598|gb|AAS96248.1| [Fe] hydrogenase gamma [Desulfovibrio vulgaris subsp. vulgaris str.
Hildenborough]
gi|226889|prf||1610171A hydrogenase gamma
Length = 606
Score = 411 bits (1056), Expect = e-113, Method: Composition-based stats.
Identities = 229/587 (39%), Positives = 333/587 (56%), Gaps = 26/587 (4%)
Query: 2 VNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEI-AACRVCVVEL----EGKE 56
+N I+ ++ + TI+EAA G IP LC L I CRVC+VE+ E
Sbjct: 1 MNAFINGKEVRCEPGRTILEAARENGHFIPTLCELADIGHAPGTCRVCLVEIWRDKEAGP 60
Query: 57 KLITACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDL 116
+++T+C VEEGM ++T +P+VR +R V+++L+ HD CA C R G+C LQ +A +
Sbjct: 61 QIVTSCTTPVEEGMRIFTRTPEVRRMQRLQVELLLADHDHDCAACARHGDCELQDVAQFV 120
Query: 117 NIQDVL--YEEQLEDQPWDKNFP-LIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGART 173
+ + + + D + P ++RD KCI+C+RC+ VC +Q ++ + G G T
Sbjct: 121 GLTGTRHHFPDYARSRTRDVSSPSVVRDMGKCIRCLRCVAVCRNVQGVDALVVTGNGIGT 180
Query: 174 TINVSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRT 233
I + +R+ + +DC CGQC CPVGAL RDD E+ + +P+ V V Q APA+R
Sbjct: 181 EIGLRHNRSQSASDCVGCGQCTLVCPVGALAGRDDVERVIDYLYDPEIVTVFQFAPAVRV 240
Query: 234 AWGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDK 293
GE GL + ++ AL+ +GAD V DT F+ADL IMEE E ++R G
Sbjct: 241 GLGEEFGLPPGSSVEGQVPTALRLLGADVVLDTNFAADLVIMEEGTELLQRLRGG--AKL 298
Query: 294 PMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIM 353
P+FTSCCPGWV F + P ++ H+S+ +SP Q GA+ K+Y A + PE + V++M
Sbjct: 299 PLFTSCCPGWVNFAEKHLPDILPHVSTTRSPQQCLGALAKTYLARTMNVAPERMRVVSLM 358
Query: 354 PCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEP----DKLFH 409
PC AKK E F + D+D VLTTREF R+L+ I L EP D L
Sbjct: 359 PCTAKKEEAARPEFRRD-GVRDVDAVLTTREFARLLRREGI---DLAGLEPSPCDDPLMG 414
Query: 410 DASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKEN 469
A+GA +IFG TGGVMEAALRT Y+ + GK P V H+ + + EA L E
Sbjct: 415 RATGAAVIFGTTGGVMEAALRTVYHVLNGKELAP----VELHALRGYENVREAVVPLGEG 470
Query: 470 N--LRIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESG--ELAVK 525
N +++AV GL R++++++ AG+ + FVE+MACPGGC+ GGGQP + A
Sbjct: 471 NGSVKVAVVHGLKAARQMVEAVLAGKADHVFVEVMACPGGCMDGGGQPRSKRAYNPNAQA 530
Query: 526 RGSNLYFIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
R + L+ +D + +R SH N I +Y F +P S+ +H LLHT +
Sbjct: 531 RRAALFSLDAENALRQSHNNPLIGKVYESFLGEPCSNLSHRLLHTRY 577
>gi|56387327|gb|AAV86076.1| uptake hydrogenase [Clostridium saccharoperbutylacetonicum]
Length = 562
Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats.
Identities = 213/570 (37%), Positives = 326/570 (57%), Gaps = 18/570 (3%)
Query: 4 LTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLITACN 63
+TIDNI + ++ I+E AGI +P CF ++ ACR+C+VE + + + +AC+
Sbjct: 6 MTIDNIPVEIQDEKNILELVRKAGIELPTFCFYSELSVYGACRMCMVETK-RGDIESACS 64
Query: 64 NSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQDVLY 123
GM ++TN+P++R R+ ++++L+ H C C +SG C LQ LA I DV +
Sbjct: 65 TPPRAGMEIFTNTPRLRKYRKNILELLLANHCRDCTTCQQSGACKLQELAKRFGINDVRF 124
Query: 124 EEQLEDQPWDKN-FPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRT 182
D D++ ++R+ KCI C C++VC+++Q++ + G G++ T+ +
Sbjct: 125 PNTAPDVELDESSVAIVRNKSKCILCGDCVRVCEEVQNVGAIDFVGRGSKMTVTTAFDEP 184
Query: 183 IADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLD 242
I ++C CGQC CP GA+ R +TEK W+ + NP K VVVQ+APA+R G +G +
Sbjct: 185 IGHSNCVSCGQCAAVCPTGAIVVRSNTEKLWQDLNNPKKRVVVQIAPAVRVGLGTQLGEE 244
Query: 243 LKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCCPG 302
++ K+ AL+R+G D +FDT+ ADLT++EE EF+ + E P+FTSCCP
Sbjct: 245 DGRNAMGKMAAALRRMGFDKIFDTSVGADLTVIEETNEFVSKLQNNEA--LPLFTSCCPA 302
Query: 303 WVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEI 362
WV + + YP L+ ++SS KSPM MF AV+K ++ E ++ SVAIMPC AKK E
Sbjct: 303 WVNYAEKTYPELMKNVSSCKSPMGMFAAVLKEHYRE----DDRELVSVAIMPCSAKKFEA 358
Query: 363 DMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATG 422
E F + D+D V+TT+EFV M+ + I L+ D+ F SGAG+IFG TG
Sbjct: 359 AREEFKND-GVPDVDYVVTTQEFVNMVNESGIAFSELEPEALDRPFQSCSGAGVIFGVTG 417
Query: 423 GVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLANT 482
GV EA +R ++ + P + G+ E + + ++IA+ SGL N
Sbjct: 418 GVTEAVIRK----VLSEQPVPALRSFAFEGVRGMEGVKETTINALDREIKIAIVSGLKNA 473
Query: 483 RRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSKVRYS 542
+I ++ AGE HY FVE+MACPGGC+ G GQP ++ E VKRG+ LY +DK + S
Sbjct: 474 DNIIKTVRAGEAHYGFVEVMACPGGCINGAGQPFAKAEE-KVKRGAQLYKVDKMKSISRS 532
Query: 543 HENECIKALYNDFFEKPNSHKAHSLLHTDH 572
+N + +LY+ + K H LLH +
Sbjct: 533 DDNPLMDSLYSGILKD----KTHELLHVHY 558
>gi|114567942|ref|YP_755096.1| (Fe) hydrogenase, large subunit HymC, putative [Syntrophomonas
wolfei subsp. wolfei str. Goettingen]
gi|114338877|gb|ABI69725.1| (Fe) hydrogenase, large subunit HymC, putative [Syntrophomonas
wolfei subsp. wolfei str. Goettingen]
Length = 563
Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats.
Identities = 230/573 (40%), Positives = 341/573 (59%), Gaps = 16/573 (2%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
MV + ++ + S E T+M+AA +AG IP LC + C+VCVV++ G+ K T
Sbjct: 1 MVTIKVNGFETSVPEGSTVMQAAAAAGFMIPSLCSHPDLQVKDNCKVCVVDVNGEIK--T 58
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
AC+ V GM V TN+P+V ++R ++ IL H C C R+ NC LQTLA L I+
Sbjct: 59 ACSEVVAPGMEVKTNTPRVIAEKRNNLKKILKVHPQDCLNCARNQNCELQTLAGTLIIRS 118
Query: 121 VLYEEQLEDQPWDKNFP-LIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSG 179
+E + P D++ P ++RD KC C+RC+++C+ +Q++ E++ G TI+
Sbjct: 119 --FEHKPLKLPQDRSTPSIVRDPSKCTLCLRCVEMCNDVQTVGALEIK-NGVPQTID--- 172
Query: 180 SRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHI 239
+ + + C +CGQC CPVGA+ E ++ E+F AVA+P+K+V+ Q+APA+R A E +
Sbjct: 173 GKALIETKCVMCGQCALVCPVGAIIENEEVEEFLAAVADPEKIVITQIAPAVRVAVAEEL 232
Query: 240 GLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSC 299
G+ + L+++G DYVF T F+ADLTI+EE E ++R +G PM TSC
Sbjct: 233 GITTGALDMLNFVAGLRQLGFDYVFHTNFTADLTILEEGNELLKRLKEG--GTLPMLTSC 290
Query: 300 CPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKK 359
PGW+ FI++ YP + HLS+ KSP QMFGA+ K+Y+AEK+G P I+SV+IMPC AKK
Sbjct: 291 SPGWINFIETFYPDQLDHLSTCKSPQQMFGALAKTYWAEKMGIDPAKIYSVSIMPCTAKK 350
Query: 360 SEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFG 419
E D+D VLTTRE ++ + + L+ + D L +GAG+IFG
Sbjct: 351 FEAQRPEMNAS-GFRDVDLVLTTREVGKLFRMGGAYWDKLEPSNFDSLLGAYTGAGVIFG 409
Query: 420 ATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGL 479
A+GGVMEAALRT Y + G+ F VR + ++ S T +++AV + L
Sbjct: 410 ASGGVMEAALRTVYEVVTGQTLEDVNFTGVRGFESMKKAEVDLSGT----KVKVAVANSL 465
Query: 480 ANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSKV 539
R+++D I+AG Y F+E+M CPGGC+GGGGQPI + +R +Y D+ +
Sbjct: 466 GAARKIMDEIKAGTSPYHFIEVMCCPGGCIGGGGQPIPSTIAKKKERIEAIYVEDEGLPL 525
Query: 540 RYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
R SH+N +K LY DF ++P HK+H LLHT +
Sbjct: 526 RKSHDNPEVKKLYEDFLKEPLGHKSHELLHTHY 558
>gi|50344697|dbj|BAD29951.1| hydrogenase [Clostridium paraputrificum]
Length = 582
Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats.
Identities = 239/586 (40%), Positives = 324/586 (55%), Gaps = 34/586 (5%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
M N+ I++ A E T++E A GI IP LC+LK + C VC VE+EGK L
Sbjct: 1 MKNIIINDKVCKAAEGKTVLEVARENGIDIPTLCYLKECGNVGKCGVCAVEIEGKNNLAL 60
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
AC VE+GMVV T++ KV+ + V IL++H+ KC C R NC L L +
Sbjct: 61 ACLTKVEDGMVVRTDTEKVQERVKSRVSTILNKHEFKCGPCPRRENCELLKLVIKTKAKA 120
Query: 121 V--LYEEQLEDQPWDKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVS 178
E E+ ++ + D KCI C RC C E GT + +NV+
Sbjct: 121 TTPFVVENKEEYVDIRSKSITIDRSKCILCGRCAAACT--------EKTGTSSIKLVNVN 172
Query: 179 GSRTIA--------DADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPA 230
G R + + +C LCGQC+ CPVGAL E+ ++ A+ +P+K V+V +APA
Sbjct: 173 GKRIVTPEEQKCFDETNCLLCGQCVAACPVGALSEKTHIDRVKEALEDPEKHVIVAMAPA 232
Query: 231 IRTAWGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFS-KGE 289
+RTA GE + K++ AL+ +G D +FD F AD+TIMEEA E +ER KG
Sbjct: 233 VRTAMGELFNMGYGVDVTGKLYTALRELGFDRIFDINFGADMTIMEEATELLERIEKKGP 292
Query: 290 LKDKPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFS 349
PMFTSCCPGWVR +++ YP L+ +LSSAKSP Q+FG K+Y+ G PE IF+
Sbjct: 293 F---PMFTSCCPGWVRQVENYYPELLENLSSAKSPQQIFGTASKTYYPHIAGIDPEKIFT 349
Query: 350 VAIMPCVAKKSEIDMELFYGEYAG-HDMDCVLTTREFVRMLKSAHILPETLKETEPDKLF 408
V IMPC AKK E D E E G ++D VLTTRE + +K I L+++E D
Sbjct: 350 VTIMPCTAKKFEADREDM--ELDGLRNIDAVLTTRELAKFIKEKKIAFAKLEDSEADPAM 407
Query: 409 HDASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKE 468
+ +GAG+IFGATGGVMEAA+RTA + K + VR +GI EAS +
Sbjct: 408 GEYTGAGVIFGATGGVMEAAIRTAKEFVEKKELENLDYTEVRGL----NGIKEASVNIGG 463
Query: 469 NNLRIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQP-----IHESGELA 523
+ +AV +G AN I+S K Y F+E+M CPGGCV GGGQP E ++
Sbjct: 464 EDYNVAVINGSANLFEFIESGRMNSKEYHFIEVMTCPGGCVNGGGQPHVNNLEREKIDIK 523
Query: 524 VKRGSNLYFIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLH 569
R S LY DK++K R SHEN + +Y+++ +P KAH LLH
Sbjct: 524 SVRASVLYNQDKSAKKRKSHENVALMKMYDEYMGQPGRGKAHELLH 569
>gi|134299511|ref|YP_001113007.1| hydrogenases, Fe-only [Desulfotomaculum reducens MI-1]
gi|134052211|gb|ABO50182.1| hydrogenases, Fe-only [Desulfotomaculum reducens MI-1]
Length = 659
Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats.
Identities = 226/555 (40%), Positives = 334/555 (60%), Gaps = 12/555 (2%)
Query: 4 LTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLITACN 63
+TI+ I + I+ A GI IP LC+ + ACR+CVVE+E + + +C+
Sbjct: 5 ITINGQIIDFTDEKNILAVARKVGIDIPTLCYHPELTIAGACRLCVVEIE-RMGVQASCS 63
Query: 64 NSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQDVLY 123
+ +GMVVYTNS KV R+ ++++L+ HD +C C SG C LQ AND I+ + Y
Sbjct: 64 TAPTDGMVVYTNSEKVNRVRKMVLELLLANHDRECTTCDSSGACKLQKYANDYGIKRLRY 123
Query: 124 EEQLEDQPWD-KNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRT 182
+ P D + ++RD KCI C C++VC + Q + +W+ + G+RT I + +
Sbjct: 124 PNRTTMAPLDTSSLSIVRDPNKCILCGLCVRVCKEKQGIGVWDFKNRGSRTDIVAAMDQP 183
Query: 183 IADADCSLCGQCITHCPVGALRERDDT-EKFWRAVANPDKVVVVQVAPAIRTAWGEHIGL 241
++++ C CGQCI CP GAL + ++ W A+ +P K VV Q+APA R A GE GL
Sbjct: 184 LSESACINCGQCIAVCPTGALTSNSSSIQEIWAAIRDPKKTVVCQIAPAPRAALGEEFGL 243
Query: 242 DLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCCP 301
D + K+ AL++IG D VFDT F+AD+T +EE+ EF+ R KGE + P+FTSCCP
Sbjct: 244 GSVDVT-KKVVTALRKIGFDKVFDTVFTADMTTIEESNEFLSRLVKGE--NLPLFTSCCP 300
Query: 302 GWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSE 361
GWV++ + +P L+S+LSS +SP QMFGAV+K +A+++G P+D+F V++MPC AKK E
Sbjct: 301 GWVKYAEEFHPELLSNLSSCRSPQQMFGAVLKKKYAKELGIAPQDMFVVSVMPCTAKKYE 360
Query: 362 IDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGAT 421
F E A +D+D VLTT E RM+K A I+ TL+E+E D+ A+G+G++FG T
Sbjct: 361 AKRPEFTTEGA-YDVDAVLTTVEAARMIKEAGIIFNTLEESEFDQPMQQATGSGVLFGTT 419
Query: 422 GGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLAN 481
GGVME+ +R + GK + V + E I AS + +N L +AV +GL+
Sbjct: 420 GGVMESVIRY----VAGKLLNAEGRVDVEFTRGMEDTKI-ASINVGDNKLNLAVVNGLSA 474
Query: 482 TRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSKVRY 541
T LI I++GE VE+MACPGGCVGGGGQP E R S +Y ID ++
Sbjct: 475 TEALIQKIQSGELDVQAVEVMACPGGCVGGGGQPFQNDNEHRKARASEIYGIDAKLELHK 534
Query: 542 SHENECIKALYNDFF 556
+ +NE + ++ ++
Sbjct: 535 AQDNEDLNKIFEKYW 549
>gi|106886332|ref|ZP_01353674.1| Ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding:Iron hydrogenase,
small subunit:Hydrogenase large subunit-like
[Clostridium phytofermentans ISDg]
gi|106766144|gb|EAT22881.1| Ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding:Iron hydrogenase,
small subunit:Hydrogenase large subunit-like
[Clostridium phytofermentans ISDg]
Length = 567
Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats.
Identities = 219/572 (38%), Positives = 333/572 (58%), Gaps = 16/572 (2%)
Query: 4 LTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLITACN 63
+ ID ++ + I+ AGI +P C+ ++ ACR+CVVE + +I +C+
Sbjct: 5 MIIDGNRVEFNDEPNILALVRKAGIDLPTFCYYSDLSIYGACRMCVVE-DQWGGIIASCS 63
Query: 64 NSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQDVLY 123
++ M V TN+PK+ R+ ++++L+ H C +C ++G C LQ LA+ I+ V +
Sbjct: 64 TPPKDKMEVKTNTPKLHQHRKMILELLLAAHCRDCTVCDKNGKCRLQELAHRFGIKSVRF 123
Query: 124 EEQLEDQPWD-KNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRT 182
E + E+ D + +IRD KCI C C+++C++IQ++ + GA+ ++ + ++
Sbjct: 124 ENKTEEMELDTSSASIIRDPGKCILCGDCVRMCNEIQNVGAIDFAHRGAKMIVSPAFNKK 183
Query: 183 IADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLD 242
IA+ +C CGQC CP A+ + D + W+A+ NP K VVVQVAPA+R A GE +
Sbjct: 184 IAETNCVNCGQCAAVCPTAAITVKSDLKDVWKAIYNPKKRVVVQVAPAVRVALGEEFHMK 243
Query: 243 LKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCCPG 302
+ + KI AL+R+G D +FDT+ ADLTIMEE+ E +++ GE K P+FTSCCPG
Sbjct: 244 AGENVIGKIVAALRRLGFDAIFDTSVGADLTIMEESKELLKKLEAGENK-YPLFTSCCPG 302
Query: 303 WVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEI 362
W+R+ ++++ L+ ++S+ KSPM+MFGAV+K +F + + SVAIMPC AKK E
Sbjct: 303 WIRYAETKHKELLPYISTCKSPMEMFGAVIKEHFKGLDSTEGVETVSVAIMPCSAKKYEA 362
Query: 363 DMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATG 422
E F D+D V+TT E V+M+K I E ++ PD F SGAG+IFG TG
Sbjct: 363 SREEFKRNDIP-DVDYVITTIELVKMIKEIGIQFEEIEPEAPDMPFSLYSGAGVIFGVTG 421
Query: 423 GVMEAALRTAYYAIMGKNCPPDAFKVVRH-SSQEESGIIEASFTLKENNL-RIAVTSGLA 480
GV EAA+R + P A K + + G+ ++EN++ RI V SGLA
Sbjct: 422 GVTEAAVRRVV-----ADKSPKALKDIEFLGLRGMEGVKVCELQVEENSIVRIGVVSGLA 476
Query: 481 NTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSKVR 540
N LI+ IE+GE+H+DFVE+MACPGGC+ G GQP E R +Y DK S+++
Sbjct: 477 NAEALIEKIESGEEHFDFVEVMACPGGCIAGAGQPFSHKEEKNA-RALGMYKADKVSQIK 535
Query: 541 YSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
EN + +LYN + H+ H LLH +
Sbjct: 536 RCEENPLMLSLYNGMLK----HRTHELLHVSY 563
>gi|156864730|gb|EDO58161.1| hypothetical protein CLOL250_01299 [Clostridium sp. L2-50]
Length = 561
Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats.
Identities = 219/576 (38%), Positives = 321/576 (55%), Gaps = 21/576 (3%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
M +TI++IK+ + ++ AGI IP C+ ++ ACR+CVVE + + K+
Sbjct: 1 MDYITINSIKVPIEGEKNVLSLIRKAGIDIPTFCYHSELSIYGACRMCVVE-DDRGKIFA 59
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
AC+ + GMV+YTN+ KV+ R+ ++++LS H C C ++G C LQ+LA + +
Sbjct: 60 ACSETPRAGMVIYTNTKKVQQYRKLIIELLLSSHCRDCTTCQKNGMCALQSLAYKVGVHA 119
Query: 121 VLYEEQLEDQPWDKNFP-LIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSG 179
V + +++ D + P ++RD KCI C C++ CD+IQ L + + G++ + +
Sbjct: 120 VRFLNNKKEEKIDMSSPSIVRDPNKCILCGDCVRTCDEIQGLGVIDFAFRGSKMKVQPAF 179
Query: 180 SRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHI 239
+ +A+ DC CGQC CP A+ R + W A+ +P VV Q+APA+R A G++
Sbjct: 180 DKPLAETDCVGCGQCAVVCPTAAISIRTNVTDIWDAIEDPSIRVVAQIAPAVRVAVGDNF 239
Query: 240 GLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSC 299
G+ + K+ AL+ +G D VFDT+F ADLT+MEE+ EF R + E P+FTSC
Sbjct: 240 GIPKGENCFGKLVSALRIMGFDMVFDTSFGADLTVMEESKEFAARLASDE--KLPLFTSC 297
Query: 300 CPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKK 359
CPGWV++ + +YP +LS+ +SP MF AV+K YFAEK + + V+IMPC AKK
Sbjct: 298 CPGWVKYCEEKYPEFADNLSTCRSPQGMFSAVIKDYFAEKDKEDGKRTMVVSIMPCTAKK 357
Query: 360 SEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFG 419
EI + + D D V+TT E VRM+K + L+ D F ASGAG IFG
Sbjct: 358 GEILRPDNFTD-GRQDTDYVITTTEVVRMIKQMGLQFTELENESADAPFSVASGAGKIFG 416
Query: 420 ATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSS----QEESGIIEASFTLKENNLRIAV 475
TGGV EA LR + ++ +R S + G EA+ L ++IAV
Sbjct: 417 TTGGVTEAVLR--------RLAEDKSYNTIREISYTGVRGFEGTKEATIDLDGREVKIAV 468
Query: 476 TSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDK 535
GLAN RL+D I +GE YDFVE+MAC GC+ GGGQP R +Y D
Sbjct: 469 VHGLANAGRLLDRIRSGEASYDFVEVMACRRGCIMGGGQPSGAGPRTRRSRMEGMYNADA 528
Query: 536 NSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTD 571
+S VR+S EN I+ LY+ F + K H LLH +
Sbjct: 529 SSNVRFSEENPAIRQLYDHFL----AGKEHRLLHRN 560
>gi|19547863|gb|AAK60409.1| hydrogenase [Neocallimastix frontalis]
Length = 636
Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats.
Identities = 233/607 (38%), Positives = 320/607 (52%), Gaps = 50/607 (8%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
MVN++I+ K K T++EAA++ G IP LC+ + + CR+C+V +G K +T
Sbjct: 29 MVNISINGRKFQVKPKTTVLEAAKANGYYIPTLCYHQELPVAGNCRLCLVYAKGSWKPLT 88
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
AC V EGM + T+SP V R ++ M+ +H C C +G+C QD
Sbjct: 89 ACTTEVWEGMEIETDSPAVIETVRSSLSMMREEHPNDCMTCGSNGDC---------EFQD 139
Query: 121 VLYEEQLEDQ------------------------PWDKN-FPLIRDSKKCIKCMRCIQVC 155
++Y Q++ + P+D F + RD KC+KC RCI+ C
Sbjct: 140 LIYRYQIDAKHPVRSLLKHKSKKTNHSITEPCYSPFDNTTFSVARDMNKCVKCGRCIRAC 199
Query: 156 DKIQSLNIWELEGTGARTTINVSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRA 215
Q++NI + R + C CGQC CPVGA+ R + R
Sbjct: 200 HHFQNINILGFINRAGYERVGTPMDRPMNFTKCVECGQCSQVCPVGAITARTEVVDVLRH 259
Query: 216 VANPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIM 275
+ KVVV APAIR A E + K+ L+++G DY+FDT FSADLTIM
Sbjct: 260 LDTKRKVVVCSTAPAIRVAPAEEFSTEADFDFTGKMVAGLRKLGFDYIFDTNFSADLTIM 319
Query: 276 EEAYEFIERFSKGELKDKPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSY 335
EE E I+R + G PMFTSCCPGW+ ++ YP L +LSS KSP QM GAV+KSY
Sbjct: 320 EEGTELIDRLNNG--GKFPMFTSCCPGWINMVEKSYPELSDNLSSCKSPQQMIGAVIKSY 377
Query: 336 FAEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAGH----DMDCVLTTREFVRMLKS 391
FA+K+G EDI V+IMPC AKK E F + D+D V+TTRE + +LK
Sbjct: 378 FAKKLGLSTEDIIHVSIMPCTAKKGEARRPEFVQKGKDGKDYPDIDYVITTRELLTLLKL 437
Query: 392 AHILPETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYAIMGKN-CPPDAFKVVR 450
I P L + + D S AG +FG TGGVMEAA+RTA +N P K +R
Sbjct: 438 KKINPAELPDDKFDSPLGIGSSAGNLFGVTGGVMEAAIRTAQVITGVENPIPLGELKAIR 497
Query: 451 HSSQEESGIIEASFTL-----KENNLRIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACP 505
GI A+ L KE ++R AV SG AN ++ ++ I+ E +DF+E+M CP
Sbjct: 498 GL----DGIKAANVPLKTKDGKEVSVRAAVVSGGANIQKFLEKIKNKELEFDFIEMMMCP 553
Query: 506 GGCVGGGGQPIHESGELAVKRGSNLYFIDKNSKVRYSHENECIKALYNDFFEKPNSHKAH 565
GGC+ GGGQP E+ K+ +Y +D +K+R HEN I +Y +F +PNSH AH
Sbjct: 554 GGCINGGGQPKSADPEIVAKKMQRMYTMDDQAKLRLCHENPEIIDVYKNFLGEPNSHLAH 613
Query: 566 SLLHTDH 572
LLHT +
Sbjct: 614 ELLHTHY 620
>gi|153954875|ref|YP_001395640.1| Predicted Fe-only hydrogenase 1 [Clostridium kluyveri DSM 555]
gi|146347733|gb|EDK34269.1| Predicted Fe-only hydrogenase 1 [Clostridium kluyveri DSM 555]
Length = 580
Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats.
Identities = 225/577 (38%), Positives = 312/577 (54%), Gaps = 18/577 (3%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
M+ + +D +I AKEN TI++ A + IP LC+LK I C VC+VE GK +I
Sbjct: 1 MITVILDGKEIKAKENSTILQVARDNNVDIPTLCYLKDCMNIGKCGVCLVEANGK--IIV 58
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLA--NDLNI 118
AC +EEGMV+ T S V+ ++ + +L H+ KC C R +C L
Sbjct: 59 ACATKIEEGMVIDTKSETVKERIKKRISSLLDTHEFKCGPCPRREDCEFLKLVIKTKAKA 118
Query: 119 QDVLYEEQLEDQPWDKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVS 178
E E ++ L+ D KCI C RC+ C ++ + + T+ +
Sbjct: 119 SKPFLPEDREKYIDSRSNALVLDRTKCILCGRCVAACKVHSGTSVMQFIKKDGKRTVGIE 178
Query: 179 GSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEH 238
+ +++C LCGQC+ CPVGAL E+ + A+ +P K V+V +AP++R A GE
Sbjct: 179 NNPCFDNSNCLLCGQCVIACPVGALTEKPHISRVQEALKDPKKHVIVAMAPSVRAAIGEL 238
Query: 239 IGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTS 298
+ KI+ AL+ + D +FD F AD+TIMEEA E +ER G PMFTS
Sbjct: 239 FNMGFGKDVTGKIYTALRMLNFDKIFDINFGADMTIMEEATELLERIKNG--GPFPMFTS 296
Query: 299 CCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAK 358
CCP WVR ++ YP L+ +LSSAKSP Q+FG K+Y+ G + +DI++V IMPC K
Sbjct: 297 CCPAWVRQAQNYYPELLENLSSAKSPQQIFGTATKTYYPSISGIEAKDIYTVTIMPCNDK 356
Query: 359 KSEIDMELFYGEYAGHD-MDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGII 417
K E D+ E G +D VLTTRE +M+K+A I +L+++E D + SGAG+I
Sbjct: 357 KYEADLTDM--EVNGMRCIDAVLTTRELAKMIKAAKIKFTSLEDSEADAAMGEYSGAGVI 414
Query: 418 FGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTS 477
FG TGGVMEAALRTA + + +R GI E+S + N IAV +
Sbjct: 415 FGNTGGVMEAALRTAKDFAENVDLKDIEYTQIRGL----KGIKESSVEISGNTYNIAVIN 470
Query: 478 GLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQP-----IHESGELAVKRGSNLYF 532
G AN IDS + GEK Y F+E+MACPGGC+ GGGQP E + R S LY
Sbjct: 471 GAANLFDFIDSGKIGEKQYHFIEVMACPGGCINGGGQPHLNSLNRELIDYRTLRASVLYN 530
Query: 533 IDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLH 569
D + R SH+N I +Y+ +F KP AH LLH
Sbjct: 531 QDNHLPKRKSHKNTAIIKMYDTYFGKPGHGLAHELLH 567
>gi|114843909|ref|ZP_01454368.1| hydrogenase large subunit-like [Thermoanaerobacter ethanolicus
X514]
gi|114806100|gb|EAU57882.1| hydrogenase large subunit-like [Thermoanaerobacter ethanolicus
X514]
Length = 451
Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats.
Identities = 203/451 (45%), Positives = 283/451 (62%), Gaps = 6/451 (1%)
Query: 2 VNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLITA 61
V + ID+I + + T++EAA+ AGI IP LC+LK IN+I ACR+CVVE+EG L T+
Sbjct: 4 VRVMIDSITVEVPSHYTVLEAAKEAGIDIPTLCYLKEINQIGACRICVVEIEGVRNLQTS 63
Query: 62 CNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQDV 121
C V +GM VYTN+PKVR R+ +++ILS HD C C+R+ NC LQ+L+ L + ++
Sbjct: 64 CTYPVFDGMKVYTNTPKVREARKLNLELILSNHDRSCLTCIRNTNCELQSLSKKLGVDEI 123
Query: 122 LYEEQLEDQPWDKNFP-LIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGS 180
+E + D P ++RD KC+ C RC+ VC ++Q++ + G T + S
Sbjct: 124 RFEGENIKYSIDNASPSIVRDPNKCVLCRRCVSVCSEVQNVFAIGMVNRGFNTMVAPSFG 183
Query: 181 RTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIG 240
R++ D+ C CGQCI CPVGA+ E+D T++ + A+A+ K VV Q APA+R A GE G
Sbjct: 184 RSLKDSPCISCGQCIEVCPVGAIYEKDHTKRVYEALADEKKYVVAQTAPAVRVALGEEFG 243
Query: 241 LDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCC 300
+ + K+ AL+R+G D +FDT F+ADLTIMEE E +ER G PM TSC
Sbjct: 244 MPIGSIVTGKMVAALRRMGFDAIFDTNFAADLTIMEEGSELLERLKNG--GKLPMITSCS 301
Query: 301 PGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKS 360
PGW+ F + YP + +LS+ KSP M GA++KSY+AEK G PEDI+ V+IMPC AKK
Sbjct: 302 PGWIAFCEKYYPEFIDNLSTCKSPHMMMGALVKSYYAEKKGLNPEDIYIVSIMPCTAKKL 361
Query: 361 EIDMELFYGEYAG-HDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFG 419
EI+ ++ G D+D VLTTRE RM+K I L + E D+ ++GA +IFG
Sbjct: 362 EIERPEM--QHNGIKDVDAVLTTRELARMIKEMGIDFVNLPDEEYDEPLGMSTGAAVIFG 419
Query: 420 ATGGVMEAALRTAYYAIMGKNCPPDAFKVVR 450
ATGGVMEAALRT + GK+ ++ VR
Sbjct: 420 ATGGVMEAALRTVADIVEGKDLDKFDYEEVR 450
>gi|150018922|ref|YP_001311176.1| hydrogenase, Fe-only [Clostridium beijerinckii NCIMB 8052]
gi|149905387|gb|ABR36220.1| hydrogenase, Fe-only [Clostridium beijerinckii NCIMB 8052]
Length = 567
Score = 387 bits (994), Expect = e-105, Method: Composition-based stats.
Identities = 205/573 (35%), Positives = 336/573 (58%), Gaps = 19/573 (3%)
Query: 4 LTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLITACN 63
+ ID +I + I++ AGI +P LC+ ++ ACR+CVVE E + ++T+C+
Sbjct: 5 MVIDGNRIEFDKEKNILDLVRKAGIDLPTLCYYTDLSVYGACRMCVVEDE-RGSILTSCS 63
Query: 64 NSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQDVLY 123
++ M + TN+PK++ R+ ++++L+ H C IC ++G C LQ LA+ + ++ +
Sbjct: 64 TPPKDMMSIRTNTPKLQKYRKVILELLLATHCRDCTICEKNGKCKLQKLASRFGLTNIRF 123
Query: 124 EEQLEDQPWDKNF-PLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRT 182
+ + D + +IRD KCI C C+++C++IQS+ + G+ ++ + ++
Sbjct: 124 KSIEGKKDLDTSSKSIIRDPNKCILCGDCVRMCNEIQSVGAIDFANRGSNMVVSPAFGKS 183
Query: 183 IADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLD 242
+A+ DC CGQC T CP GA+ + D + W+A+ N + V+ QVAPA+R A GE G+
Sbjct: 184 LAETDCVNCGQCATVCPTGAIVVKSDIKNVWKAIYNHKQRVIAQVAPAVRVALGEEFGIK 243
Query: 243 LKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCCPG 302
+ + KI A++++G + ++DT+ SADLT++EE+ EF+++ + K P+FTSCCP
Sbjct: 244 PGENVMGKIVAAMRKLGFENIYDTSLSADLTVIEESKEFLKKLESDDNK-FPLFTSCCPA 302
Query: 303 WVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEI 362
WVR+++++Y L+ ++SS KSPM+MFG+V+K+YF EK + + SVA+MPC AKK+E
Sbjct: 303 WVRYVENKYTELLPYVSSCKSPMEMFGSVVKAYFKEKDSLENRETISVAVMPCTAKKAEA 362
Query: 363 DMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATG 422
E F + D+D V+TT E M+K I + ++ D SGAG+IFG TG
Sbjct: 363 AREEFIRDNIP-DVDYVITTAELCAMIKEIGIQFDEIEAEASDIPLSLYSGAGVIFGVTG 421
Query: 423 GVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLANT 482
GV EA +R + F VR G+ +K+ ++RI + SGL N
Sbjct: 422 GVTEAVIREVVKDKSSRVLKDIEFIGVRGM----KGVKTCELQVKDESIRIGIVSGLRNA 477
Query: 483 RRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQP---IHESGELAVKRGSNLYFIDKNSKV 539
LI+ I++GE+H+DF+E+MACPGGC+ G GQP + E E R LY IDK +++
Sbjct: 478 EDLIEKIKSGEEHFDFIEVMACPGGCIAGAGQPFGLMEEKNE----RAKGLYKIDKVTQI 533
Query: 540 RYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
+ S EN +K+LY + ++ LLH +
Sbjct: 534 KRSEENLVVKSLYEGLLK----NRTKELLHVHY 562
>gi|153812805|ref|ZP_01965473.1| hypothetical protein RUMOBE_03212 [Ruminococcus obeum ATCC 29174]
gi|149831165|gb|EDM86254.1| hypothetical protein RUMOBE_03212 [Ruminococcus obeum ATCC 29174]
Length = 562
Score = 385 bits (989), Expect = e-105, Method: Composition-based stats.
Identities = 212/578 (36%), Positives = 316/578 (54%), Gaps = 21/578 (3%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
M +TID K+ + ++ +AGI IP LC+ ++ ACR+C VE + + K
Sbjct: 1 MGTMTIDGRKVEFTDEKNVLTVIRNAGIDIPTLCYHSELSTFGACRLCTVE-DDRGKTFA 59
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
+C+ +GMV++TN+ K+R R+ V+++L+ H C C++SG C LQ LA+ L ++
Sbjct: 60 SCSEVPRDGMVIHTNTNKLRNYRKLIVELLLAAHCRDCTTCIKSGECVLQELAHRLGVRT 119
Query: 121 VLYEEQLEDQPWDKNFP-LIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSG 179
V ++ E D + P ++RD KCI C C++ C++IQ + G + +
Sbjct: 120 VRFQNTREQHELDFSSPSIVRDPNKCILCGNCVRACEEIQGIGALGFAFRGTEAMVMPAF 179
Query: 180 SRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHI 239
++ IA+ C CGQC CP GA+ +T+K ++A+A+PD VV Q+APA+R A G+H
Sbjct: 180 NKKIAETQCVNCGQCRAFCPTGAISIHTNTDKVFKALADPDIRVVAQIAPAVRVAVGDHY 239
Query: 240 GLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSC 299
GL + + KI +AL R+G D V+DT FSADLTIMEE+ EF+ R KGE P+ TSC
Sbjct: 240 GLQKGRSVMGKIVNALHRMGFDEVYDTTFSADLTIMEESAEFLNRIEKGE--KLPLLTSC 297
Query: 300 CPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKK 359
CP WV+FI QY + ++S+ +SP M AV+K YF + + + V+IMPC AKK
Sbjct: 298 CPAWVKFITDQYKDYIPNISTCRSPQGMLSAVIKEYFRDPEHAQGKKTVMVSIMPCTAKK 357
Query: 360 SEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFG 419
+E Y + D D V+TT E +RM+ + + L+ D F SG G+IFG
Sbjct: 358 AEAVRPNSY-THGEKDTDIVITTTELLRMIDNFGLDFAGLEPEACDMPFGFGSGGGVIFG 416
Query: 420 ATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQ----EESGIIEASFTLKENNLRIAV 475
TGGV EA LR + P + + +R S+ + GI E S K ++I V
Sbjct: 417 VTGGVTEAVLR--------RLTPDHSKETMREISECGVRGDEGIKEFSVPYKGMEIKICV 468
Query: 476 TSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDK 535
SGLAN R ++D ++ GE Y +E+MAC GC+ GGGQP R LY D
Sbjct: 469 ASGLANARIVMDRVKNGEAEYHLIEVMACRRGCIMGGGQPTRSGDRTKAARARGLYNADN 528
Query: 536 NSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDHF 573
+ ++ S EN + LY + K H LLH + +
Sbjct: 529 TTIIKKSDENPMVLELYQGLLKG----KEHELLHNEFY 562
>gi|125972951|ref|YP_001036861.1| hydrogenase, Fe-only [Clostridium thermocellum ATCC 27405]
gi|125713176|gb|ABN51668.1| hydrogenase, Fe-only [Clostridium thermocellum ATCC 27405]
Length = 566
Score = 383 bits (984), Expect = e-104, Method: Composition-based stats.
Identities = 210/571 (36%), Positives = 326/571 (57%), Gaps = 20/571 (3%)
Query: 4 LTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLITACN 63
+ ID I + ++E AGI +P C+ ++ ACR+C+VE E L AC+
Sbjct: 7 MLIDGIPVEINGEKNLLELIRKAGIKLPTFCYHSELSVYGACRMCMVENEWG-GLDAACS 65
Query: 64 NSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQDVLY 123
GM + TN+ +++ R+ ++++L+ H C C +G C LQ LA NI + +
Sbjct: 66 TPPRAGMSIKTNTERLQKYRKMILELLLANHCRDCTTCNNNGKCKLQDLAMRYNISHIRF 125
Query: 124 EEQLEDQPWD-KNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRT 182
+ D + + RD KCI C C++VC+++Q++ + G++ TI+ +
Sbjct: 126 PNTASNPDVDDSSLCITRDRSKCILCGDCVRVCNEVQNVGAIDFAYRGSKMTISTVFDKP 185
Query: 183 IADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLD 242
I +++C CGQC CP GA+ +DDT+K W+ + + + V VQ+APA+R A G+ +GL+
Sbjct: 186 IFESNCVGCGQCALACPTGAIVVKDDTQKVWKEIYDKNTRVSVQIAPAVRVALGKELGLN 245
Query: 243 LKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCCPG 302
+ ++ KI AL+R+G D +FDT+ ADLT++EE+ E + R +G+ D P+FTSCCP
Sbjct: 246 DGENAIGKIVAALRRMGFDDIFDTSTGADLTVLEESAELLRRIREGK-NDMPLFTSCCPA 304
Query: 303 WVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEI 362
WV + + YP L+ H+S+ +SPMQMF +++K E+ + + VA+MPC AKK E
Sbjct: 305 WVNYCEKFYPELLPHVSTCRSPMQMFASIIK----EEYSTSSKRLVHVAVMPCTAKKFEA 360
Query: 363 DMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATG 422
+ F ++D VLTT+E VRM+K + I+ L+ D F +GAG+IFG +G
Sbjct: 361 ARKEFKVN-GVPNVDYVLTTQELVRMIKESGIVFSELEPEAIDMPFGTYTGAGVIFGVSG 419
Query: 423 GVMEAALRTAYYAIMGKNCPPDAFKVVRHSS-QEESGIIEASFTLKENNLRIAVTSGLAN 481
GV EA LR + P +F+ + ++ + +G+ EAS + L++AV SGL N
Sbjct: 420 GVTEAVLRRVV-----SDKSPTSFRSLAYTGVRGMNGVKEASVMYGDRKLKVAVVSGLKN 474
Query: 482 TRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSKVRY 541
LI+ I+AGE HYD VE+MACPGGC+ GGGQP +S E KRG LY DK ++
Sbjct: 475 AGDLIERIKAGE-HYDLVEVMACPGGCINGGGQPFVQSEERE-KRGKGLYSADKLCNIKS 532
Query: 542 SHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
S EN + LY + + H LLH D+
Sbjct: 533 SEENPLMMTLYKGILKG----RVHELLHVDY 559
>gi|110799871|ref|YP_697035.1| iron hydrogenase [Clostridium perfringens ATCC 13124]
gi|4239873|dbj|BAA74726.1| hydrogenase [Clostridium perfringens]
gi|7959055|dbj|BAA95936.1| hydrogenase [Clostridium perfringens]
gi|110674518|gb|ABG83505.1| iron hydrogenase [Clostridium perfringens ATCC 13124]
Length = 572
Score = 383 bits (984), Expect = e-104, Method: Composition-based stats.
Identities = 225/588 (38%), Positives = 318/588 (54%), Gaps = 34/588 (5%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
M + I++ I + TI++ A G IP LC LK C VC+VE EG ++L+
Sbjct: 1 MNKIIINDKTIEFDGDKTILDLARENGFDIPVLCELKNCGNKGQCGVCLVEQEGNDRLLR 60
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
+C ++GMV+ T+S KV R+ V +L +H+ KC C R NC L
Sbjct: 61 SCAIKAKDGMVIKTDSEKVLEARKERVAELLDEHEFKCGPCKRRENCEFLKL-------- 112
Query: 121 VLYEEQLEDQPW----------DKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTG 170
V+ + +P+ D++ ++ D KC+KC RC+ C + N +
Sbjct: 113 VIKTKARAHKPFVVADKSEYVDDRSKSIVLDRSKCVKCGRCVAACRTRTATNSIKFHRID 172
Query: 171 ARTTINVSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPA 230
+ + D +C LCGQCI CPV AL E+ E+ A+ +P+K V+V +APA
Sbjct: 173 GVRLVGPEELKCFDDTNCLLCGQCIAACPVDALSEKSHIERVQEALNDPEKHVIVAMAPA 232
Query: 231 IRTAWGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGEL 290
+RT+ GE + K++ AL+ +G D VFD F AD+TIMEEA E IER
Sbjct: 233 VRTSMGELFKMGYGQDVTGKLYTALRELGFDKVFDINFGADMTIMEEATELIERIKNN-- 290
Query: 291 KDKPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSV 350
PM TSCCP WVR +++ +P LV +LSSAKSP Q+FGA K+Y+ + P+ +F+V
Sbjct: 291 GPFPMLTSCCPSWVREVENYFPELVENLSSAKSPQQIFGAASKTYYPQVADIDPKKVFTV 350
Query: 351 AIMPCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHD 410
+MPC +KK E D E ++D V+TTRE RM+K+A I L++ E D +
Sbjct: 351 TVMPCTSKKFEADRPEMENE-GIRNIDAVITTRELARMIKAAKIDFAKLEDGEVDPAMGE 409
Query: 411 ASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENN 470
+GAG+IFGATGGVMEAALRTA + N ++ VR +GI EA + N
Sbjct: 410 YTGAGVIFGATGGVMEAALRTAKDFMENDNLDNVDYEAVRGL----AGIKEAEVEIAGNE 465
Query: 471 LRIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVK----- 525
++AV SG AN L+ S + + H F+E+MACPGGCV GGGQP H S E + K
Sbjct: 466 YKLAVVSGAANVFELVKSGKINDYH--FIEVMACPGGCVNGGGQP-HISAEDSDKMDIRE 522
Query: 526 -RGSNLYFIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
R S LY DKN + R SH+N + +Y + KP +AH LLH +
Sbjct: 523 VRASVLYNQDKNLEKRKSHQNSALLKMYESYMGKPGHGRAHELLHMKY 570
>gi|18311328|ref|NP_563262.1| hydrogenase [Clostridium perfringens str. 13]
gi|4239897|dbj|BAA74738.1| hydrogenase [Clostridium perfringens]
gi|18146011|dbj|BAB82052.1| hydrogenase [Clostridium perfringens str. 13]
Length = 572
Score = 383 bits (984), Expect = e-104, Method: Composition-based stats.
Identities = 225/588 (38%), Positives = 319/588 (54%), Gaps = 34/588 (5%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
M + I++ I + TI++ A G IP LC LK C VC+VE EG ++L+
Sbjct: 1 MNKIIINDKTIEFDGDKTILDLARENGFDIPVLCELKNCGNKGQCGVCLVEQEGNDRLLR 60
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
+C ++GMV+ T+S KV R+ V +L +H+ KC C R NC L
Sbjct: 61 SCAIKAKDGMVIKTDSEKVLEARKERVAELLDEHEFKCGPCKRRENCEFLKL-------- 112
Query: 121 VLYEEQLEDQPW----------DKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTG 170
V+ + +P+ D++ ++ D KC+KC RC+ C + N +
Sbjct: 113 VIKTKARAHKPFVVADKSEYVDDRSKSIVLDRSKCVKCGRCVAACRTRTATNSIKFHRID 172
Query: 171 ARTTINVSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPA 230
+ + D +C LCGQCI CPV AL E+ E+ A+ +P+K V+V +APA
Sbjct: 173 GVRLVGPEELKCFDDTNCLLCGQCIAACPVDALSEKSHIERVQDALNDPEKHVIVAMAPA 232
Query: 231 IRTAWGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGEL 290
+RT+ GE + K++ AL+ +G D VFD F AD+TIMEEA E IER
Sbjct: 233 VRTSMGELFKMGYGQDVTGKLYTALRELGFDKVFDINFGADMTIMEEATELIERIKNN-- 290
Query: 291 KDKPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSV 350
PM TSCCP WVR +++ +P LV +LSSAKSP Q+FGA K+Y+ + P+ +F+V
Sbjct: 291 GPFPMLTSCCPSWVREVENYFPELVENLSSAKSPQQIFGAASKTYYPQVADIDPKKVFTV 350
Query: 351 AIMPCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHD 410
+MPC +KK E D E ++D V+TTRE RM+K+A I L++ E D +
Sbjct: 351 TVMPCTSKKFEADRPEMENE-GIRNIDAVITTRELARMIKAAKIDFAKLEDGEVDPAMGE 409
Query: 411 ASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENN 470
+GAG+IFGATGGVMEAALRTA + N ++ VR +GI EA + N
Sbjct: 410 YTGAGVIFGATGGVMEAALRTAKDFMENDNLDNVDYEAVRGL----AGIKEAEVEIAGNE 465
Query: 471 LRIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVK----- 525
++AV SG AN L+ S + + H F+E+MACPGGCV GGGQP H S E + K
Sbjct: 466 YKLAVVSGAANVFELVKSGKINDYH--FIEVMACPGGCVNGGGQP-HISAEDSDKIDIRE 522
Query: 526 -RGSNLYFIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
R S LY DKN + R SH+N + +Y ++ KP +AH LLH +
Sbjct: 523 VRASVLYNQDKNLEKRKSHQNSALLKMYENYMGKPGHGRAHELLHMKY 570
>gi|110803368|ref|YP_699606.1| iron hydrogenase [Clostridium perfringens SM101]
gi|110683869|gb|ABG87239.1| iron hydrogenase [Clostridium perfringens SM101]
Length = 572
Score = 382 bits (981), Expect = e-104, Method: Composition-based stats.
Identities = 221/588 (37%), Positives = 321/588 (54%), Gaps = 34/588 (5%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
M + I++ I + TI++ A G IP LC LK C VC+VE EG ++L+
Sbjct: 1 MNKIIINDKTIEFDGDKTILDLARENGFDIPVLCELKNCGNKGQCGVCLVEQEGNDRLLR 60
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
+C ++GMV+ T+S KV R+ V +L +H+ KC C R NC L
Sbjct: 61 SCAIKAKDGMVIKTDSEKVLEARKERVAELLDEHEFKCGPCKRRENCEFLKL-------- 112
Query: 121 VLYEEQLEDQPW----------DKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTG 170
V+ + +P+ D++ ++ D KC+KC RC+ C + N +
Sbjct: 113 VIKTKARAHKPFVVADKSEYVDDRSKSIVLDRSKCVKCGRCVAACRTRTATNSIKFHRID 172
Query: 171 ARTTINVSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPA 230
+ + D +C LCGQC+ CPV AL E+ E+ A+ +P+K V+V +APA
Sbjct: 173 GVRLVGPEELKCFDDTNCLLCGQCVAACPVDALSEKSHIERVQDALNDPEKHVIVAIAPA 232
Query: 231 IRTAWGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGEL 290
+RT+ GE + K++ AL+++G D VFD F AD+TIMEEA E IER
Sbjct: 233 VRTSMGELFKMGYGQDVTGKLYTALRKLGFDKVFDINFGADMTIMEEATELIERIKNN-- 290
Query: 291 KDKPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSV 350
PM TSCCP WVR +++ +P LV +LS+AKSP Q+FG+ K+Y+ + P+ +F+V
Sbjct: 291 GPFPMLTSCCPSWVREVENYFPELVENLSTAKSPQQIFGSASKTYYPQVADIDPKKVFTV 350
Query: 351 AIMPCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHD 410
+MPC +KK E D E ++D V+TTRE RM+K+A I L+++E D +
Sbjct: 351 TVMPCTSKKFEADRPEMENE-GIRNIDAVITTRELARMIKAAKIDFAKLEDSEVDPAMGE 409
Query: 411 ASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENN 470
+GAG+IFGATGGVMEAALRTA + N ++ VR +GI EA + N
Sbjct: 410 YTGAGVIFGATGGVMEAALRTAKDFMENDNLDNVDYEAVRGL----AGIKEAEVEIAGNE 465
Query: 471 LRIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVK----- 525
++AV +G AN L+ S + + H F+E+MACPGGCV GGGQP H S E + K
Sbjct: 466 YKLAVVNGAANVFELVKSGKINDYH--FIEVMACPGGCVNGGGQP-HISAEDSDKIDIRE 522
Query: 526 -RGSNLYFIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
R S LY DKN + R SH+N + +Y ++ KP +AH LLH +
Sbjct: 523 VRASVLYNQDKNLEKRKSHQNSALLKMYENYMGKPGHGRAHELLHMKY 570
>gi|77920096|ref|YP_357911.1| iron-containing hydrogenase, Hyd gamma [Pelobacter carbinolicus DSM
2380]
gi|77546179|gb|ABA89741.1| iron-containing hydrogenase, Hyd gamma [Pelobacter carbinolicus DSM
2380]
Length = 598
Score = 380 bits (977), Expect = e-103, Method: Composition-based stats.
Identities = 224/581 (38%), Positives = 334/581 (57%), Gaps = 21/581 (3%)
Query: 5 TIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEI-AACRVCVVELEGK----EKLI 59
TI+ + + TI++ A + IP LC L+ ++ CRVC+VE++ K +++
Sbjct: 4 TINGKLVEFGADETILQTARRYDMFIPTLCELENLDHTPGTCRVCLVEIKRKGDDFTQIV 63
Query: 60 TACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQ 119
T+CN +EEG+ V T S KVR +R V ++L+ H+ CA CVR G+C LQ +A + ++
Sbjct: 64 TSCNTPMEEGIEVQTRSRKVREQQRLQVNLLLTDHEEDCATCVRHGDCELQDVAQFVGLK 123
Query: 120 DVLYEEQLED-QPWDKNFP-LIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINV 177
+ ++ + D + P +IRD KCI+C RC+ +C ++Q ++ G + I V
Sbjct: 124 EARFKYDFSGGRTKDISSPSVIRDMTKCIRCGRCVTICREVQGTDVLFYANKGVDSEIGV 183
Query: 178 SGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGE 237
S + +DC CGQC CPVGAL ERDDTE+ + +P+ VVQ APA R A GE
Sbjct: 184 RDSDLLNTSDCVSCGQCTLVCPVGALAERDDTEEVIDYLNDPEMFTVVQFAPATRVALGE 243
Query: 238 HIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFT 297
+ ++ A +++GAD V DT F+AD+ IMEE E + R +G P+ T
Sbjct: 244 EFNMKPGSNVEGQMITAFRKMGADVVLDTNFTADVVIMEEGSELLHRVKEG--GTLPLLT 301
Query: 298 SCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVA 357
SC PGW+ +++ YP ++ +LS+ KSP Q GA+ K+Y AEK+ P + ++IMPC A
Sbjct: 302 SCSPGWINYVEKFYPDMICNLSTTKSPQQCLGAIAKTYLAEKMAIDPAKMRVISIMPCTA 361
Query: 358 KKSEIDM-ELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHD-ASGAG 415
KK E E G+ ++D VLTTRE +LK I L+E D + A+GA
Sbjct: 362 KKEEAKRPEFTIGDRP--EVDVVLTTRELGSLLKREGIWLPDLEEGNFDNPWMGVATGAA 419
Query: 416 IIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKE-NNLRIA 474
IFG+TGGVMEAA+RT +Y + G+ P K VR GI EAS L E + +A
Sbjct: 420 EIFGSTGGVMEAAVRTVHYIVTGEEIPGVDLKAVRGL----EGIREASVDLGELGTVNVA 475
Query: 475 VTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESG--ELAVKRGSNLYF 532
+ + L + R L++ + +GEK Y F+E+MACPGGC+GGGGQP H+ E R +Y
Sbjct: 476 IANSLKSARELLERVRSGEKEYHFIEVMACPGGCMGGGGQPKHKRNYREFLTARQKAIYD 535
Query: 533 IDKNSKVRYSHENECIKALYNDFFEKP-NSHKAHSLLHTDH 572
ID S++R SH N +K +Y+ +F +P +S ++H LHT +
Sbjct: 536 IDAGSELRQSHRNPLVKEMYDSYFGEPYSSERSHKYLHTTY 576
>gi|130069|sp|P29166|PHF1_CLOPA Iron hydrogenase 1 ([Fe] hydrogenase) (Fe-only hydrogenase) (CpI)
gi|4139441|pdb|1FEH|A Chain A, Fe-Only Hydrogenase From Clostridium Pasteurianum
gi|6730137|pdb|1C4A|A Chain A, Binding Of Exogenously Added Carbon Monoxide At The Active
Site Of The Fe-Only Hydrogenase (Cpi) From Clostridium
Pasteurianum
gi|6730138|pdb|1C4C|A Chain A, Binding Of Exogenously Added Carbon Monoxide At The Active
Site Of The Fe-Only Hydrogenase (Cpi) From Clostridium
Pasteurianum
gi|144836|gb|AAA23248.1| hydrogenase I
Length = 574
Score = 377 bits (967), Expect = e-102, Method: Composition-based stats.
Identities = 219/587 (37%), Positives = 315/587 (53%), Gaps = 36/587 (6%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGIN-EIAACRVCVVELEGKEKLI 59
M + I+ ++ + E+ TI++ A I I LCFL N +I C +C VE+EG L+
Sbjct: 1 MKTIIINGVQFNTDEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEVEGT-GLV 59
Query: 60 TACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQ 119
TAC+ +E+GM++ TNS V + + +L H+ KC C R NC L
Sbjct: 60 TACDTLIEDGMIINTNSDAVNEKIKSRISQLLDIHEFKCGPCNRRENCEFLKL------- 112
Query: 120 DVLYEEQLEDQPW----------DKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGT 169
V+ + +P+ +++ L D KC+ C RC+ C K +
Sbjct: 113 -VIKYKARASKPFLPKDKTEYVDERSKSLTVDRTKCLLCGRCVNACGKNTETYAMKFLNK 171
Query: 170 GARTTINVSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAP 229
+T I + D +C LCGQCI CPV AL E+ ++ A+ P+K V+V +AP
Sbjct: 172 NGKTIIGAEDEKCFDDTNCLLCGQCIIACPVAALSEKSHMDRVKNALNAPEKHVIVAMAP 231
Query: 230 AIRTAWGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGE 289
++R + GE + KI+ AL+++G D +FD F AD+TIMEEA E ++R
Sbjct: 232 SVRASIGELFNMGFGVDVTGKIYTALRQLGFDKIFDINFGADMTIMEEATELVQRIENN- 290
Query: 290 LKDKPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFS 349
PMFTSCCPGWVR ++ YP L+++LSSAKSP Q+FG K+Y+ G P+++F+
Sbjct: 291 -GPFPMFTSCCPGWVRQAENYYPELLNNLSSAKSPQQIFGTASKTYYPSISGLDPKNVFT 349
Query: 350 VAIMPCVAKKSEIDMELFYGEYAG-HDMDCVLTTREFVRMLKSAHILPETLKETEPDKLF 408
V +MPC +KK E D E G D+D V+TTRE +M+K A I L+++E D
Sbjct: 350 VTVMPCTSKKFEADRPQM--EKDGLRDIDAVITTRELAKMIKDAKIPFAKLEDSEADPAM 407
Query: 409 HDASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKE 468
+ SGAG IFGATGGVMEAALR+A +K VR +GI EA +
Sbjct: 408 GEYSGAGAIFGATGGVMEAALRSAKDFAENAELEDIEYKQVRGL----NGIKEAEVEINN 463
Query: 469 NNLRIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIH------ESGEL 522
N +AV +G +N + + S EK Y F+E+MAC GGCV GGGQP H E ++
Sbjct: 464 NKYNVAVINGASNLFKFMKSGMINEKQYHFIEVMACHGGCVNGGGQP-HVNPKDLEKVDI 522
Query: 523 AVKRGSNLYFIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLH 569
R S LY D++ R SHEN + +Y ++F KP +AH +LH
Sbjct: 523 KKVRASVLYNQDEHLSKRKSHENTALVKMYQNYFGKPGEGRAHEILH 569
>gi|19548180|gb|AAL90459.1|AF446076_1 [Fe]-hydrogenase [Piromyces sp. E2]
Length = 555
Score = 375 bits (964), Expect = e-102, Method: Composition-based stats.
Identities = 217/556 (39%), Positives = 300/556 (53%), Gaps = 47/556 (8%)
Query: 48 CVVELEGKEKLITACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNC 107
C+V+++G K +TAC V EGM + T++P VR R ++ M+ +H C C +GNC
Sbjct: 1 CLVDVKGSWKPLTACTTEVWEGMEIETDTPAVRETVRSSLAMMREEHPNDCMTCESNGNC 60
Query: 108 TLQTLANDLNIQDVLYEEQLEDQ------------------------PWDKN-FPLIRDS 142
QD++Y Q++ Q P+D + F + RD
Sbjct: 61 ---------EFQDLIYRYQIDAQHPVRTLLRNKFKKTNHSITEPCYSPFDDSTFSISRDM 111
Query: 143 KKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRTIADADCSLCGQCITHCPVGA 202
KC+KC RC++ C Q++NI + R + C CGQC CPVGA
Sbjct: 112 NKCVKCGRCVRACHHFQNINILGFINRAGYERVGTPMDRPMNFTKCVECGQCSQVCPVGA 171
Query: 203 LRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKRIGADY 262
+ ER++ + R + K+VVV APAIR A E + K+ LK++G DY
Sbjct: 172 ITERNECIEVLRHLDTKRKIVVVSTAPAIRVALAEEFNAEPDFDFTGKMVAGLKKLGFDY 231
Query: 263 VFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCCPGWVRFIKSQYPHLVSHLSSAK 322
+FDT FSADLTIMEE E I R ++G PMFTSCCPGW+ ++ YP + +LSS K
Sbjct: 232 IFDTNFSADLTIMEEGTELITRLNEG--GKFPMFTSCCPGWINMVEKSYPEIRDNLSSCK 289
Query: 323 SPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAGHDMDCVLTT 382
SP QM GAV+K+YFA+KI KPEDI V++MPC AKK E F + D+D V+TT
Sbjct: 290 SPQQMIGAVIKTYFAKKINAKPEDIIHVSVMPCTAKKGEAKRPEFKRD-GVPDIDHVITT 348
Query: 383 REFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYAIMGKN-C 441
RE + +LK I P LK + D S AG +FG TGGVMEAA+RTA +N
Sbjct: 349 RELITLLKLKRINPSELKNEKFDSPLGIGSSAGNLFGVTGGVMEAAVRTAQIITGVENPI 408
Query: 442 PPDAFKVVRHSSQEESGIIEASFTLKEN-----NLRIAVTSGLANTRRLIDSIEAGEKHY 496
P K +R GI AS LK N+R AV SG AN ++ ++ ++ E +
Sbjct: 409 PLGELKAIRGL----DGIKAASVPLKTKDGKDVNVRAAVVSGGANIQKFLEKLKKKELEF 464
Query: 497 DFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSKVRYSHENECIKALYNDFF 556
DFVE+M CPGGC+ GGGQP ++ K+ +Y +D + +R SHEN I +Y +F
Sbjct: 465 DFVEMMMCPGGCINGGGQPKSADPKVVAKKMERMYTMDDQASLRLSHENPEITQIYKEFL 524
Query: 557 EKPNSHKAHSLLHTDH 572
++PN H +H LLHT +
Sbjct: 525 KEPNGHLSHELLHTHY 540
>gi|15893326|ref|NP_346675.1| Hydrogene dehydrogenase [Clostridium acetobutylicum ATCC 824]
gi|15022848|gb|AAK78015.1|AE007516_6 Hydrogene dehydrogenase [Clostridium acetobutylicum ATCC 824]
gi|557064|gb|AAB03723.1| hydrogenase I
Length = 582
Score = 375 bits (964), Expect = e-102, Method: Composition-based stats.
Identities = 223/584 (38%), Positives = 313/584 (53%), Gaps = 24/584 (4%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
M + ++ ++ +++TI+E A + IP LCFLK C VC+VE+EGK
Sbjct: 1 MKTIILNGNEVHTDKDITILELARENNVDIPTLCFLKDCGNFGKCGVCMVEVEGK-GFRA 59
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLA--NDLNI 118
AC VE+GMV+ T S +V+ ++ V M+L +H+ KC C R NC L
Sbjct: 60 ACVAKVEDGMVINTESDEVKERIKKRVSMLLDKHEFKCGQCSRRENCEFLKLVIKTKAKA 119
Query: 119 QDVLYEEQLEDQPWDKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVS 178
E + +++ ++ D KC+ C RC+ C + S + + +
Sbjct: 120 SKPFLPEDKDALVDNRSKAIVIDRSKCVLCGRCVAACKQHTSTCSIQFIKKDGQRAVGTV 179
Query: 179 GSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEH 238
+ D+ C LCGQC+ CPV AL+E+ EK A+ +P K V+V +AP++RTA GE
Sbjct: 180 DDVCLDDSTCLLCGQCVIACPVAALKEKSHIEKVQEALNDPKKHVIVAMAPSVRTAMGEL 239
Query: 239 IGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDK---PM 295
+ K++ AL+ +G D VFD F AD+TIMEEA E + G +K+ PM
Sbjct: 240 FKMGYGKDVTGKLYTALRMLGFDKVFDINFGADMTIMEEATELL-----GRVKNNGPFPM 294
Query: 296 FTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPC 355
FTSCCP WVR ++ +P L+ +LSSAKSP Q+FG K+Y+ G PED+++V IMPC
Sbjct: 295 FTSCCPAWVRLAQNYHPELLDNLSSAKSPQQIFGTASKTYYPSISGIAPEDVYTVTIMPC 354
Query: 356 VAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAG 415
KK E D+ F + D+D LTTRE +M+K A I L++ E D SGAG
Sbjct: 355 NDKKYEADIP-FMETNSLRDIDASLTTRELAKMIKDAKIKFADLEDGEVDPAMGTYSGAG 413
Query: 416 IIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAV 475
IFGATGGVMEAA+R+A K + VR GI EA + N L +AV
Sbjct: 414 AIFGATGGVMEAAIRSAKDFAENKELENVDYTEVRGF----KGIKEAEVEIAGNKLNVAV 469
Query: 476 TSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQP-----IHESGELAVKRGSNL 530
+G +N + S + EK Y F+E+MACPGGC+ GGGQP E+ + R S L
Sbjct: 470 INGASNFFEFMKSGKMNEKQYHFIEVMACPGGCINGGGQPHVNALDRENVDYRKLRASVL 529
Query: 531 YFIDKN--SKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
Y DKN SK R SH+N I +Y+ +F KP AH LLH +
Sbjct: 530 YNQDKNVLSK-RKSHDNPAIIKMYDSYFGKPGEGLAHKLLHVKY 572
>gi|118725176|ref|ZP_01573819.1| hydrogenases, Fe-only [Clostridium cellulolyticum H10]
gi|118665408|gb|EAV72027.1| hydrogenases, Fe-only [Clostridium cellulolyticum H10]
Length = 562
Score = 372 bits (955), Expect = e-101, Method: Composition-based stats.
Identities = 201/557 (36%), Positives = 320/557 (57%), Gaps = 15/557 (2%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
M + ID I + I+ GI +P C+ ++ ACR+C+VE + IT
Sbjct: 1 MGTMIIDGQHIEFTDEKNILAVIRKVGIELPTFCYHSELSVYGACRMCMVE-DKWGSTIT 59
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
+C+ ++GM V+TN+ K++ R+ ++++L+ HD C C +SG C LQ +A + ++
Sbjct: 60 SCSTPPKDGMEVWTNTDKLKKHRKMILELLLANHDRDCTTCEKSGRCKLQEIALKVGVKK 119
Query: 121 VLYEEQLEDQPWDKNFP-LIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSG 179
V + ++ ++ P D P +IR+ KCI C C++ C +IQ + + + G+ + +
Sbjct: 120 VRFGQEKKEIPIDDMGPSVIRNPNKCILCGDCVRACQEIQGVGVLDFAYRGSNLQVTTAF 179
Query: 180 SRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHI 239
++++ + DC CGQC CP GAL + D ++ ++A+ + +K V+ Q+APA+R A GE
Sbjct: 180 NKSLQEVDCVNCGQCRVVCPTGALMIKKDIDRAYKALHDKNKRVIAQIAPAVRVAIGEDF 239
Query: 240 GLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSC 299
GL + S+ KI AL+++G D VFDTA ADLT++EEA E ++R + E P+F+SC
Sbjct: 240 GLQPGEISMGKIVSALRKLGFDQVFDTAVGADLTVIEEAEELMDRIQRKE--KLPLFSSC 297
Query: 300 CPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMK-SYFAEKIGKKPEDIFSVAIMPCVAK 358
CP W ++ + ++P L+ ++SS SP QMFGAV+K Y EK + E++ +AIMPC AK
Sbjct: 298 CPAWFKYAEQKHPDLMENVSSCLSPQQMFGAVIKEQYKREKASDEKENVV-IAIMPCTAK 356
Query: 359 KSEIDM--ELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGI 416
K E GE +D V+TT+E M++ I+ L++ D F SGAG+
Sbjct: 357 KYEAARPENTINGE---RQVDMVITTQELAIMIQENGIVFNELEDEAIDMPFGFTSGAGV 413
Query: 417 IFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVT 476
IFG +GGV EA LR Y ++ VR G+ EAS + +RI +
Sbjct: 414 IFGVSGGVSEAVLRYYYKERNASTLRGLSYCGVRGM----EGVKEASAEIDGRTVRIGIV 469
Query: 477 SGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKN 536
GL N +LI I++GE+ +DF+E+MACPGGC+GG GQPI ++ + R +Y +DK+
Sbjct: 470 HGLKNAEKLIRRIKSGEEKFDFIEVMACPGGCIGGAGQPIPQNENVRKLRAKGIYKVDKS 529
Query: 537 SKVRYSHENECIKALYN 553
++ S +N I ALYN
Sbjct: 530 LPIKRSDDNPTIDALYN 546
>gi|118579914|ref|YP_901164.1| hydrogenases, Fe-only [Pelobacter propionicus DSM 2379]
gi|118502624|gb|ABK99106.1| hydrogenases, Fe-only [Pelobacter propionicus DSM 2379]
Length = 601
Score = 369 bits (947), Expect = e-100, Method: Composition-based stats.
Identities = 200/568 (35%), Positives = 309/568 (54%), Gaps = 9/568 (1%)
Query: 6 IDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLITACNNS 65
I+N + + ++E GI +P C+ ++ +CR+C+VE+EG+ ++ +C+
Sbjct: 11 INNRPVVMEGERNLLELIRKTGIDLPTFCYQSDLSVYGSCRLCLVEIEGR-GIVGSCSTP 69
Query: 66 VEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQDVLYEE 125
E GM V+T++ ++R R+ +++ L+ HD C C++S +C LQ LA L + V ++
Sbjct: 70 PEAGMRVHTHTEEIRELRKIAIELFLANHDSNCPTCLKSDDCQLQNLARRLGVDAVRFQS 129
Query: 126 QLEDQPWDKNFP-LIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRTIA 184
L +P D + P +IRD KC+ C C ++C +IQ + + G + + + I
Sbjct: 130 VLVKKPIDNSSPAIIRDPNKCVLCGDCARMCSEIQGIGAIDFAHRGHDAAVLPAFGKKIG 189
Query: 185 DADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLK 244
+ +C CGQC CP G+L + + E+ W+++ + V +APA+R A GE G++
Sbjct: 190 EVECVNCGQCTIVCPTGSLCLKPEMEEVWKSLTDKQTYTVAAIAPAVRVAIGEIFGMEAG 249
Query: 245 DASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCCPGWV 304
S ++ ALK +G D V+D +F+ADLT +EE EF+ER S G P FTSCCP WV
Sbjct: 250 AVSTGQMLAALKLLGFDQVYDVSFAADLTTIEEGSEFLERRSAG--VRLPHFTSCCPAWV 307
Query: 305 RFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDM 364
++++ +PHL+ +LS+ KSP+QMFGA++K + + E + V+I PC AKK E
Sbjct: 308 KYVEHFHPHLIGNLSTCKSPLQMFGALLKDRLPDLVQIPRERVKVVSITPCTAKKFEAKR 367
Query: 365 ELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATGGV 424
F + D+D V+TT E RM+K+A I L D F ++ AG+IFG +GGV
Sbjct: 368 PEFTHD-GIPDIDHVITTIELGRMIKAAGIQFNDLSPESFDMPFGFSTSAGVIFGNSGGV 426
Query: 425 MEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLANTRR 484
EA LR + K F VR ESGI EASF + + +R A+ GL N +
Sbjct: 427 TEAVLRFTMEKLSNKPLAKLDFVEVRG----ESGIREASFDIGGSTIRFAIVHGLKNAKM 482
Query: 485 LIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSKVRYSHE 544
LI I AG+ YDFVE+MACP GC+ GGGQP++ R L+ K + +
Sbjct: 483 LITKIAAGKCAYDFVEVMACPQGCINGGGQPVNHVYNYKQLRTRGLFTAGKMFHLHKPQD 542
Query: 545 NECIKALYNDFFEKPNSHKAHSLLHTDH 572
N + Y + KA LLHT +
Sbjct: 543 NIMVNECYQQYLGDVGGAKAQQLLHTHY 570
>gi|154248924|ref|YP_001409749.1| hydrogenase, Fe-only [Fervidobacterium nodosum Rt17-B1]
gi|154152860|gb|ABS60092.1| hydrogenase, Fe-only [Fervidobacterium nodosum Rt17-B1]
Length = 667
Score = 369 bits (946), Expect = e-100, Method: Composition-based stats.
Identities = 203/556 (36%), Positives = 307/556 (55%), Gaps = 21/556 (3%)
Query: 19 IMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLITACNNSVEEGMVVYTNSPK 78
++EA GI IP LC+L + ACR+C+VE++G+E + T+C EGM + T++PK
Sbjct: 19 VLEALREVGIEIPNLCYLSETSVYGACRMCLVEVDGRE-ITTSCTLMPREGMEIKTHTPK 77
Query: 79 VRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQDVLYEEQLEDQPWDKNFPL 138
+ R+ +Q++L+ HD C C +G C LQ A D + +E+ + DKN +
Sbjct: 78 IYEMRKGILQLLLASHDGDCTTCEMNGKCKLQKYAQDFGLTTNRFEKISKKTITDKNSII 137
Query: 139 IRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRTIADADCSLCGQCITHC 198
+RD+ KCI C C++ CD+IQ++ + G + S + + +C CGQC+ +C
Sbjct: 138 VRDNAKCILCGDCVRACDEIQTVAAIDFAYRGFEAQVVPSFEEKLENTECVFCGQCVAYC 197
Query: 199 PVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKRI 258
P GAL R+D +K ++A+ K V+ +APA+R + E G++ A ++ LK I
Sbjct: 198 PTGALAIRNDVDKVYKAIEE-GKYVIGMIAPAVRASLQEEFGMEDDIAMAGRMVSILKMI 256
Query: 259 GADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCCPGWVRFIKSQYPHLVSHL 318
G VFD AF+ADL EEA+EF+ER GE P FTSCCPGWV+F + YP + +L
Sbjct: 257 GFKKVFDVAFAADLVAYEEAHEFMERLENGE--KLPQFTSCCPGWVKFAEQYYPEYLPNL 314
Query: 319 SSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAGHDMDC 378
SS KSP GA++K Y+A +IG PEDI V+IMPC AKK E + E F G D+D
Sbjct: 315 SSVKSPQMALGAIIKKYYAREIGVNPEDIVLVSIMPCTAKKFEAEREEFEG-----DIDI 369
Query: 379 VLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYAIMG 438
VLTTRE V++ K+ I + ++ D+ + +S +G+ FG TGGV+ + ++
Sbjct: 370 VLTTRELVKIFKATGIDIKMVEPESFDRPYGLSSQSGLSFGKTGGVLGSVVKVI------ 423
Query: 439 KNCPPDAFKVVRHSSQEESGIIEASFTLKENN--LRIAVTSGLANTRRLIDSIEAGEKHY 496
D V +++E + + + EN +R GL N R++I I+ G +
Sbjct: 424 ----EDKVNVKSVNTREIAQGVNLTEVELENGKVVRGVAVFGLGNVRKVISDIKEGRLNA 479
Query: 497 DFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSKVRYSHENECIKALYNDFF 556
D VE+MAC GC+GGGGQP +R L + EN ++ LY +F
Sbjct: 480 DVVEVMACNYGCIGGGGQPYPNDVRTRARRAKILKETQSVDVLISPTENFHMRELYTKYF 539
Query: 557 EKPNSHKAHSLLHTDH 572
P SH+AH +LHT++
Sbjct: 540 GAPLSHEAHEVLHTEY 555
>gi|150020388|ref|YP_001305742.1| hydrogenase large subunit domain protein [Thermosipho melanesiensis
BI429]
gi|149792909|gb|ABR30357.1| hydrogenase large subunit domain protein [Thermosipho melanesiensis
BI429]
Length = 653
Score = 367 bits (942), Expect = 1e-99, Method: Composition-based stats.
Identities = 204/555 (36%), Positives = 321/555 (57%), Gaps = 22/555 (3%)
Query: 19 IMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLITACNNSVEEGMVVYTNSPK 78
++EA + GI IP LC+L + ACR+C+VE++ ++ T+C+ EGM V T++P+
Sbjct: 19 LLEALKEVGIEIPNLCYLSETSIYGACRMCLVEVD--NQITTSCSIKPYEGMNVKTHTPE 76
Query: 79 VRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQDVLYEEQLEDQPWDKNFPL 138
+ RR ++++L+ H+ C C R+GNC LQ A + I+ V +++ + D + +
Sbjct: 77 IYEMRRGILELLLASHNRDCTTCERNGNCKLQKYAEEFGIRKVRFDKIDKPNIIDYSSII 136
Query: 139 IRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRTIADADCSLCGQCITHC 198
IRD+ KCI C C++VCD+IQS+ + G + + +A+ C LCGQC+ HC
Sbjct: 137 IRDNSKCILCGDCVRVCDEIQSIGAIDFAFRGFEAQVMPAFGEELANTACVLCGQCVAHC 196
Query: 199 PVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKRI 258
P GAL R+D +K ++A+ +K V+ +APA+R + E +GLD + +I + LK I
Sbjct: 197 PTGALTFRNDIQKVYKAMEE-EKFVIGMIAPAVRASIQEELGLDGDVVTAGRIVNFLKMI 255
Query: 259 GADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCCPGWVRFIKSQYPHLVSHL 318
G VFD +F+ADL EEA+EF ER +GE P FTSCCPGWV+F + YP L+ +L
Sbjct: 256 GFKKVFDVSFAADLVAYEEAHEFKERLERGE--KLPQFTSCCPGWVKFAEHNYPELLDNL 313
Query: 319 SSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAGHDMDC 378
SS KSP Q G+V+K +A+++G P+DIF V+IMPC AKK E + E F GE +D
Sbjct: 314 SSVKSPQQALGSVIKRIYAKEMGIDPKDIFLVSIMPCTAKKFEAEREEFAGE-----VDV 368
Query: 379 VLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYAIMG 438
V+TT+E ++++S+ +++ D+ + +S AG+ FG TGGV + L+ I
Sbjct: 369 VITTKELSQIIRSSGFDLKSIPPIPFDRPYGLSSQAGLSFGKTGGVFSSVLKVLNDEIGL 428
Query: 439 KNCPPDAFKVVRHSSQEESGIIEASFTLKE-NNLRIAVTSGLANTRRLIDSIEAGEKHYD 497
+N + + E GI + T K+ + V GL N R++++ + + + D
Sbjct: 429 ENV---------ETKEVEKGIRITNATTKDGKTINGVVVFGLGNVRKVMEKLN--DWNVD 477
Query: 498 FVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSKVRYSHENECIKALYNDFFE 557
VE+MAC GC+GGGGQP E+ +KR L + + EN + +LY + +
Sbjct: 478 IVEVMACDYGCIGGGGQPYPNDTEIRIKRAKILNEVVGIDVLISPTENYHMLSLYENHLK 537
Query: 558 KPNSHKAHSLLHTDH 572
P SH++H LLHT +
Sbjct: 538 APLSHESHKLLHTTY 552
>gi|109648206|ref|ZP_01372109.1| Twin-arginine translocation pathway signal [Desulfitobacterium
hafniense DCB-2]
gi|109641296|gb|EAT50851.1| Twin-arginine translocation pathway signal [Desulfitobacterium
hafniense DCB-2]
Length = 527
Score = 365 bits (937), Expect = 5e-99, Method: Composition-based stats.
Identities = 209/458 (45%), Positives = 278/458 (60%), Gaps = 32/458 (6%)
Query: 131 PWDKNFP-LIRDSKKCIKCMRCIQVCDKIQSL-NIWELEGTGARTTINVSGSRTIADADC 188
P D P L RD +KCI C +CI+VC IQS+ +EL IN
Sbjct: 70 PIDPENPALRRDDQKCILCGQCIEVCKTIQSVYGNYELPLKNEIPCIN------------ 117
Query: 189 SLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKDASV 248
CGQCI CP GA+ ER+D ++ +A+A+P VVVQ APA R GE GL +
Sbjct: 118 --CGQCIHWCPSGAISEREDIDQVAKALADPKITVVVQTAPATRIGLGEEFGLPVGTNVQ 175
Query: 249 NKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDK-PMFTSCCPGWVRFI 307
K AL+++G D +FDT F+ADLTIMEE E ++R + GEL P FTSCCPGWV+F+
Sbjct: 176 GKQVAALRKLGFDVIFDTNFAADLTIMEEGTELVKRIT-GELHHPLPQFTSCCPGWVKFV 234
Query: 308 KSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSE------ 361
+ YP L+ +LSSAKSP QM GA++K+YFAEK +P+ IFSVAIMPC AKK E
Sbjct: 235 EYYYPELLPNLSSAKSPQQMAGALVKTYFAEKNHVEPQKIFSVAIMPCTAKKFECQRPEM 294
Query: 362 IDMELFY-GEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGA 420
I + ++ E D+D VLTTRE RM+K A I +L + E D+L A+GAG IFG
Sbjct: 295 ISAQTYWQDEQVSPDVDVVLTTRELARMIKRAGIDLPSLPDEEYDQLMGVATGAGAIFGT 354
Query: 421 TGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLK-ENNLRIAVTSGL 479
TGGVMEAA+R+AYY + G+ P +++ E G+ EA+ ++ +RIAV SGL
Sbjct: 355 TGGVMEAAVRSAYYLVTGEQPPAALWQLTPVRGME--GVKEAAVSIPGAGEIRIAVISGL 412
Query: 480 ANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHE---SGELAVKRGSNLYFIDKN 536
N R +++ ++AG + F+E+MACPGGC GGGQP S + R ++LY ID
Sbjct: 413 DNARAIMEQVKAGNSPWTFIEVMACPGGCQYGGGQPRSSAPPSDGVRNTRAASLYKIDAQ 472
Query: 537 SKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDHFI 574
+K+R SH+N IK +Y +F P S KA LLHT H+I
Sbjct: 473 AKLRNSHDNPQIKQVYAEFLTSPLSEKAEELLHT-HYI 509
>gi|89897458|ref|YP_520945.1| putative hydrogenase large subunit [Desulfitobacterium hafniense
Y51]
gi|89336906|dbj|BAE86501.1| putative hydrogenase large subunit [Desulfitobacterium hafniense
Y51]
Length = 555
Score = 364 bits (935), Expect = 7e-99, Method: Composition-based stats.
Identities = 209/458 (45%), Positives = 278/458 (60%), Gaps = 32/458 (6%)
Query: 131 PWDKNFP-LIRDSKKCIKCMRCIQVCDKIQSL-NIWELEGTGARTTINVSGSRTIADADC 188
P D P L RD +KCI C +CI+VC IQS+ +EL IN
Sbjct: 98 PIDPENPALRRDDQKCILCGQCIEVCKTIQSVYGNYELPLKNEIPCIN------------ 145
Query: 189 SLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKDASV 248
CGQCI CP GA+ ER+D ++ +A+A+P VVVQ APA R GE GL +
Sbjct: 146 --CGQCIHWCPSGAISEREDIDQVAKALADPKITVVVQTAPATRIGLGEEFGLPVGTNVQ 203
Query: 249 NKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDK-PMFTSCCPGWVRFI 307
K AL+++G D +FDT F+ADLTIMEE E ++R + GEL P FTSCCPGWV+F+
Sbjct: 204 GKQVAALRKLGFDVIFDTNFAADLTIMEEGTELVKRIT-GELHHPLPQFTSCCPGWVKFV 262
Query: 308 KSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSE------ 361
+ YP L+ +LSSAKSP QM GA++K+YFAEK +P+ IFSVAIMPC AKK E
Sbjct: 263 EYYYPELLPNLSSAKSPQQMAGALVKTYFAEKNHVEPQKIFSVAIMPCTAKKFECQRPEM 322
Query: 362 IDMELFY-GEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGA 420
I + ++ E D+D VLTTRE RM+K A I +L + E D+L A+GAG IFG
Sbjct: 323 ISAQTYWQDEQVSPDVDVVLTTRELARMIKRAGIDLPSLPDEEYDQLMGVATGAGAIFGT 382
Query: 421 TGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLK-ENNLRIAVTSGL 479
TGGVMEAA+R+AYY + G+ P +++ E G+ EA+ ++ +RIAV SGL
Sbjct: 383 TGGVMEAAVRSAYYLVTGEQPPAALWQLTPVRGME--GVKEAAVSIPGAGEIRIAVISGL 440
Query: 480 ANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHE---SGELAVKRGSNLYFIDKN 536
N R +++ ++AG + F+E+MACPGGC GGGQP S + R ++LY ID
Sbjct: 441 DNARAIMEQVKAGNSPWTFIEVMACPGGCQYGGGQPRSSAPPSDGVRNTRAASLYKIDAQ 500
Query: 537 SKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDHFI 574
+K+R SH+N IK +Y +F P S KA LLHT H+I
Sbjct: 501 AKLRNSHDNPQIKQVYAEFLTAPLSEKAEELLHT-HYI 537
>gi|154505523|ref|ZP_02042261.1| hypothetical protein RUMGNA_03060 [Ruminococcus gnavus ATCC 29149]
gi|153794181|gb|EDN76601.1| hypothetical protein RUMGNA_03060 [Ruminococcus gnavus ATCC 29149]
Length = 531
Score = 362 bits (930), Expect = 3e-98, Method: Composition-based stats.
Identities = 199/534 (37%), Positives = 301/534 (56%), Gaps = 27/534 (5%)
Query: 47 VCVVELEGKEKLITACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGN 106
+CVVE + + K+ +C+ +GMV+YT++P+++ R+ ++++LS H C C +G
Sbjct: 1 MCVVE-DDRGKIFASCSEVPRDGMVIYTHTPRLQHHRKMILELLLSSHCRDCTTCTENGV 59
Query: 107 CTLQTLANDLNIQDVLYEEQLEDQPWDKNFP-LIRDSKKCIKCMRCIQVCDKIQSLNIWE 165
CTLQ L+ L I +V +E P D++ ++RD KCI C C++ C++IQ L I +
Sbjct: 60 CTLQKLSRQLGIDEVRFENHKPILPLDESSECIVRDPNKCILCGDCVRTCEEIQGLGILD 119
Query: 166 LEGTGARTTINVSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVV 225
G++ + + R ++ DC CGQC CP GA+ + D W A+A+ D V+
Sbjct: 120 FAFRGSKMQVMPAFDRAMSQTDCVGCGQCRVVCPTGAISIKQDIAPVWTALADKDTRVIA 179
Query: 226 QVAPAIRTAWGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERF 285
Q+APA+R A G+ G+ + ++ ++ AL+ IG D ++DT F ADLT+MEE+ E +ER
Sbjct: 180 QIAPAVRVAIGDKFGIPKGENTLGRLVAALRMIGFDEIYDTNFGADLTVMEESKELVERL 239
Query: 286 SKGELKDKPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYF------AEK 339
GE + P+FTSCCP WV+F +++YP +LS+ +SP MFGA++K A +
Sbjct: 240 ESGE--NLPLFTSCCPAWVKFCENRYPQFRKNLSTCRSPQAMFGALLKEEARTEEKKAAQ 297
Query: 340 IGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETL 399
G K ++IMPC AKK+EI + E D+D VLTT E RM++ A I L
Sbjct: 298 EGTKNRKTVVISIMPCTAKKAEIKRPEHFTE-GKQDVDYVLTTTEVTRMIQEAGI---DL 353
Query: 400 KETEPDKL---FHDASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSS-QE 455
EP+ L F +SGAG IFG TGGV EA LR + N + + + +
Sbjct: 354 SRIEPEALDMPFGLSSGAGAIFGVTGGVTEAVLRR-----LKNNSSSEVLDAISFTGIRG 408
Query: 456 ESGIIEASFTLKENNLRIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQP 515
GI EAS L ++IAV +GL + L+D ++ GE HYDFVE+MAC GC+ GGGQP
Sbjct: 409 VDGIKEASVDLNGREVKIAVVNGLHCAKELLDRMKDGEVHYDFVEVMACKRGCIAGGGQP 468
Query: 516 IHESGELAVKRGSNLYFIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLH 569
+ R +Y ID ++++ S+EN + +YN + K H LLH
Sbjct: 469 VPIGPRTKKARLEGIYKIDSMAQIKLSNENPIVATVYNGILKG----KEHKLLH 518
>gi|51947501|gb|AAU14235.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis]
Length = 1198
Score = 355 bits (912), Expect = 3e-96, Method: Composition-based stats.
Identities = 213/606 (35%), Positives = 330/606 (54%), Gaps = 40/606 (6%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAA-CRVCVVELEGKEKL- 58
MV+L ID IS + + + +A + AG +P +C+ + CRVC+VE
Sbjct: 22 MVSLKIDGKTISVPKGIMLADAIKKAGANVPTMCYHPDLPTSGGICRVCLVESAKSPGYP 81
Query: 59 ITACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNI 118
I +C VEEGM + T K++ R+ + ++LS+H C C + NC Q L++++NI
Sbjct: 82 IISCRTPVEEGMEIITQGSKMKEYRQANLALMLSRHPNACLSCASNTNCKTQDLSSNMNI 141
Query: 119 QDVLYEEQL---EDQPWDKNFPLIRDSKKCIKCMRCIQVCD--KIQSLNIWELEGTGART 173
+ +D + RD+ KCI C C+ C + +L + EG ++
Sbjct: 142 GQCGFANSTPPKSSDTYDVTTAIERDNDKCINCDICVHTCSLQGLNALGFYNEEGHFVKS 201
Query: 174 TINVSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRT 233
T+ ++C CGQCI CP GA+ E+ + A+ +P K VV Q+AP+IR
Sbjct: 202 M------GTLDTSECIQCGQCINRCPTGAITEKSEIRPVLDAINDPTKTVVFQMAPSIRV 255
Query: 234 AWGEHIGLDLKDASV-NKIFDALKRIGAD-YVFDTAFSADLTIMEEAYEFIERFSKGELK 291
A E G + + N+I AL+++G++ +V DT FSADLTI+EE +E IER +
Sbjct: 256 AVAEEFGFKPGEKILKNEIATALRKLGSNVFVLDTNFSADLTIIEEGHELIERLYRNVTG 315
Query: 292 DK-----------PMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKI 340
K PM TSCCPGW+ F++ YP +++HLS+ KSP M GA++K Y+A+ I
Sbjct: 316 KKLLGDDHMPIELPMLTSCCPGWIMFMEKNYPDMLNHLSTCKSPQGMLGALIKGYWAKNI 375
Query: 341 GK-KPEDIFSVAIMPCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETL 399
K P+DI SV+IMPC AKK+E + G+ D+D +LTTRE +MLK ++I +
Sbjct: 376 KKMDPKDIVSVSIMPCTAKKAEKERPQLRGDEGYKDVDYILTTRELAKMLKQSNIDLGKM 435
Query: 400 KETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKV--------VRH 451
+ T DK+ + +GA +IFG TGGVMEAALRTAY I G+ P + +R
Sbjct: 436 EPTPFDKVMSEGTGAAVIFGVTGGVMEAALRTAYEVITGREVPFKNLNIEAVRGMDGIRE 495
Query: 452 SSQEESGIIEASFTLKENNLRIAVTSGLANTRRLIDSIEAGEKH-----YDFVEIMACPG 506
+ + +++ + +++A+ G N R+++D I+ + + FVE+MACPG
Sbjct: 496 AGIKLENVLDKYKAFEGVTVKVAIAHGPNNARKVMDIIKRAKDSGKPAPWHFVEVMACPG 555
Query: 507 GCVGGGGQPIHESGELAVKRGSNLYFIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHS 566
GC+GGGGQP + E+ R + D + +R SH+N IKA+Y + ++P H +H
Sbjct: 556 GCIGGGGQPKPTNLEIRQARTKLTFKEDMDLPLRKSHDNPEIKAIYETYLKEPLGHNSHH 615
Query: 567 LLHTDH 572
LHT +
Sbjct: 616 YLHTTY 621
>gi|148270497|ref|YP_001244957.1| hydrogenase large subunit domain protein [Thermotoga petrophila
RKU-1]
gi|147736041|gb|ABQ47381.1| hydrogenase large subunit domain protein [Thermotoga petrophila
RKU-1]
Length = 645
Score = 347 bits (891), Expect = 9e-94, Method: Composition-based stats.
Identities = 204/569 (35%), Positives = 310/569 (54%), Gaps = 32/569 (5%)
Query: 19 IMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLITACNNSVEEGMVVYTNSPK 78
++EA ++ GI IP LC+L + ACR+C+VE++G+ + T+C EGM V TN+P+
Sbjct: 19 LLEALKNVGIEIPNLCYLSEASIYGACRMCLVEIDGQ--ITTSCTLKPYEGMKVKTNTPE 76
Query: 79 VRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQDVLYEEQLEDQPWDKNFPL 138
+ RR +++IL+ H+ C C R+G+C LQ A D I+ + +E ++ D++ P+
Sbjct: 77 IYEMRRNILELILATHNRDCTTCDRNGSCKLQKYAEDFGIRKIRFEALKKEHVRDESAPV 136
Query: 139 IRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRTIADADCSLCGQCITHC 198
+RD+ KCI C C++VC++IQ + + E G + + + + + + +C LCGQC+ +C
Sbjct: 137 VRDTSKCILCGDCVRVCEEIQGVGVIEFAKRGFESVVTTAFNTPLIETECVLCGQCVAYC 196
Query: 199 PVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKRI 258
P GAL R+D +K A+ + DK+V+ +APA+R A E G+D A K+ LK I
Sbjct: 197 PTGALSIRNDIDKLIEALES-DKIVIGMIAPAVRAAIQEEFGIDEDVAMAEKLVSFLKTI 255
Query: 259 GADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCCPGWVRFIKSQYPHLVSHL 318
G D VFD +F ADL EEA+EF ER KGE P FTSCCP WV+ + YP + +L
Sbjct: 256 GFDRVFDVSFGADLVAYEEAHEFYERLKKGE--RLPQFTSCCPAWVKHAEHTYPQYLQNL 313
Query: 319 SSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAGHDMDC 378
SS KSP Q G V+K +A K+G E IF V+ MPC AKK E + E E+ G +D
Sbjct: 314 SSVKSPQQALGTVIKKIYARKLGVPEEKIFLVSFMPCTAKKFEAERE----EHKG-IVDI 368
Query: 379 VLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYAIMG 438
VLTTRE +++K + I ++ D+ + +S AG+ FG GGV L +++
Sbjct: 369 VLTTRELAQLIKMSRIDINRIEPQPFDRPYGVSSQAGLGFGKAGGVFSCVL-----SVLN 423
Query: 439 KNCPPDAFKVVRHSSQEESGIIEASFTLKE-NNLRIAVTSGLANTRRLIDSIEAGEKHYD 497
+ + V E GI A TLK+ + + AV GL ++ ++ K +
Sbjct: 424 EEIGIEKVDV----KSPEDGIRVAEVTLKDGTSFKGAVIYGLGKVKKFLEE----RKDVE 475
Query: 498 FVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSKVRYSHENECIKALYNDFFE 557
+E+MAC GCVGGGGQP + R L + EN + LY + +
Sbjct: 476 IIEVMACNYGCVGGGGQPYPNDSRIREHRAKVLRDTMGIKSLLTPVENLFLMKLYEE--D 533
Query: 558 KPNSHKAHSLLHTDHFIWEMPRS--PKRD 584
+ H H +LHT + PR P++D
Sbjct: 534 LKDEHTRHEILHTTY----RPRRRYPEKD 558
>gi|15644177|ref|NP_229226.1| Fe-hydrogenase, subunit alpha [Thermotoga maritima MSB8]
gi|4981990|gb|AAD36496.1|AE001794_12 Fe-hydrogenase, subunit alpha [Thermotoga maritima MSB8]
gi|2865517|gb|AAC02686.1| Fe-hydrogenase alpha subunit [Thermotoga maritima]
Length = 645
Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats.
Identities = 204/569 (35%), Positives = 308/569 (54%), Gaps = 32/569 (5%)
Query: 19 IMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLITACNNSVEEGMVVYTNSPK 78
++EA ++ GI IP LC+L + ACR+C+VE+ G+ + T+C EGM V TN+P+
Sbjct: 19 LLEALKNVGIEIPNLCYLSEASIYGACRMCLVEINGQ--ITTSCTLKPYEGMKVKTNTPE 76
Query: 79 VRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQDVLYEEQLEDQPWDKNFPL 138
+ RR +++IL+ H+ C C R+G+C LQ A D I+ + +E ++ D++ P+
Sbjct: 77 IYEMRRNILELILATHNRDCTTCDRNGSCKLQKYAEDFGIRKIRFEALKKEHVRDESAPV 136
Query: 139 IRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRTIADADCSLCGQCITHC 198
+RD+ KCI C C++VC++IQ + + E G + + + + + +C LCGQC+ +C
Sbjct: 137 VRDTSKCILCGDCVRVCEEIQGVGVIEFAKRGFESVVTTAFDTPLIETECVLCGQCVAYC 196
Query: 199 PVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKRI 258
P GAL R+D +K A+ + DK+V+ +APA+R A E G+D A K+ LK I
Sbjct: 197 PTGALSIRNDIDKLIEALES-DKIVIGMIAPAVRAAIQEEFGIDEDVAMAEKLVSFLKTI 255
Query: 259 GADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCCPGWVRFIKSQYPHLVSHL 318
G D VFD +F ADL EEA+EF ER KGE P FTSCCP WV+ + YP + +L
Sbjct: 256 GFDKVFDVSFGADLVAYEEAHEFYERLKKGE--RLPQFTSCCPAWVKHAEHTYPQYLQNL 313
Query: 319 SSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAGHDMDC 378
SS KSP Q G V+K +A K+G E IF V+ MPC AKK E + E E+ G +D
Sbjct: 314 SSVKSPQQALGTVIKKIYARKLGVPEEKIFLVSFMPCTAKKFEAERE----EHEG-IVDI 368
Query: 379 VLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYAIMG 438
VLTTRE +++K + I ++ D+ + +S AG+ FG GGV L +++
Sbjct: 369 VLTTRELAQLIKMSRIDINRVEPQPFDRPYGVSSQAGLGFGKAGGVFSCVL-----SVLN 423
Query: 439 KNCPPDAFKVVRHSSQEESGIIEASFTLKE-NNLRIAVTSGLANTRRLIDSIEAGEKHYD 497
+ + V E GI A TLK+ + + AV GL ++ ++ K +
Sbjct: 424 EEIGIEKVDV----KSPEDGIRVAEVTLKDGTSFKGAVIYGLGKVKKFLEE----RKDVE 475
Query: 498 FVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSKVRYSHENECIKALYNDFFE 557
+E+MAC GCVGGGGQP + R L + EN + LY + +
Sbjct: 476 IIEVMACNYGCVGGGGQPYPNDSRIREHRAKVLRDTMGIKSLLTPVENLFLMKLYEE--D 533
Query: 558 KPNSHKAHSLLHTDHFIWEMPRS--PKRD 584
+ H H +LHT + PR P++D
Sbjct: 534 LKDEHTRHEILHTTY----RPRRRYPEKD 558
>gi|4034791|emb|CAA76373.1| hydrogenase [Nyctotherus ovalis]
Length = 1206
Score = 346 bits (887), Expect = 3e-93, Method: Composition-based stats.
Identities = 213/608 (35%), Positives = 333/608 (54%), Gaps = 45/608 (7%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAA-CRVCVVELEGKEKL- 58
M++L ID IS + + + +A + AG +P +C+ + CRVC+VE
Sbjct: 22 MISLKIDGKIISVPKGIMLADAIKKAGANVPTMCYHPDLPTSGGICRVCLVESAKSPGYP 81
Query: 59 ITACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNI 118
I +C VEEGM + T K++ R+ + ++LS+H C C + NC Q L+ ++NI
Sbjct: 82 IISCRTPVEEGMEIVTQGSKMKEYRQANLALMLSRHPNACLSCTSNTNCKTQELSANMNI 141
Query: 119 QDVLYEEQL---EDQPWDKNFPLIRDSKKCIKCMRCIQVCD--KIQSLNIWELEGTGART 173
+ D +D + RD+ KCI C C+ C + +L + EG ++
Sbjct: 142 GQCGFANATPPKNDDSYDMTTAIERDNDKCINCDICVHTCSLQGLNALGFYNEEGHAVKS 201
Query: 174 --TINVSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAI 231
T++VS +C CGQCI CP GA+ E+ + A+ N + +V Q+AP+I
Sbjct: 202 MGTLDVS--------ECIQCGQCINRCPTGAITEKSEIRPVLDAI-NIQQRLVFQMAPSI 252
Query: 232 RTAWGEHIGLDLKDASV-NKIFDALKRIGAD-YVFDTAFSADLTIMEEAYEFIERFSKGE 289
R A E G+ + + N+I AL+++G++ +V DT FSADLTI+EE +E IER +
Sbjct: 253 RVAVAEEFGIKPGEKILKNEIATALRKLGSNVFVLDTNFSADLTIIEEGHELIERLYRNV 312
Query: 290 LKDK-----------PMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAE 338
K PM TSCCPGW+ FI+ YP L+++LS+ KSP M GA++K Y+A+
Sbjct: 313 TGKKLLGGDHMPIDLPMLTSCCPGWIMFIEKNYPDLLNNLSTCKSPQGMLGALIKGYWAK 372
Query: 339 KIGK-KPEDIFSVAIMPCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPE 397
I K P+DI SV+IMPC AKK+E + G+ D+D +LTTRE +MLK ++I
Sbjct: 373 NIKKMDPKDIVSVSIMPCTAKKAEKERPQLRGDEGYKDVDYILTTRELAKMLKQSNIDLA 432
Query: 398 TLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKV--------V 449
++ T DK+ + +GA +IFG TGGVMEAALRTA I G+ P + +
Sbjct: 433 KMEPTPFDKVMSEGTGAAVIFGVTGGVMEAALRTANEVITGREVPFKNLNIEAVRGMEGI 492
Query: 450 RHSSQEESGIIEASFTLKENNLRIAVTSGLANTRRLIDSIEAGEKH-----YDFVEIMAC 504
R + + +++ + +++A+ G N R+++D I+ ++ + FVE+MAC
Sbjct: 493 REAGIKLENVLDKYKAFEGVTVKVAIAHGPNNARKVMDIIKQAKESGKPAPWHFVEVMAC 552
Query: 505 PGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSKVRYSHENECIKALYNDFFEKPNSHKA 564
PGGC+GGGGQP + E+ R + D + +R SH+N IKA+Y ++ ++P H +
Sbjct: 553 PGGCIGGGGQPKPTNLEIRQARTQLTFKEDMDLPLRKSHDNPEIKAIYENYLKEPLGHNS 612
Query: 565 HSLLHTDH 572
H LHT +
Sbjct: 613 HHYLHTTY 620
>gi|147677003|ref|YP_001211218.1| iron only hydrogenase large subunit, C-terminal domain
[Pelotomaculum thermopropionicum SI]
gi|146273100|dbj|BAF58849.1| iron only hydrogenase large subunit, C-terminal domain
[Pelotomaculum thermopropionicum SI]
Length = 530
Score = 345 bits (885), Expect = 5e-93, Method: Composition-based stats.
Identities = 197/455 (43%), Positives = 270/455 (59%), Gaps = 30/455 (6%)
Query: 131 PWDKNFPLI-RDSKKCIKCMRCIQVCDKIQSL-NIWELEGTGARTTINVSGSRTIADADC 188
P D + P I RD +KCI C +C++VC ++S+ ++L + + C
Sbjct: 78 PIDADNPSITRDDQKCILCGQCLEVCKNVESVYGYYDLP--------------VVDETIC 123
Query: 189 SLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKDASV 248
CGQC CP GA+ ERDDT+K + A+A+ DK V+VQ APA R A GE GL
Sbjct: 124 INCGQCSMACPSGAISERDDTKKVFEALADKDKFVLVQTAPATRVALGEEFGLPPGTWVQ 183
Query: 249 NKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDK-PMFTSCCPGWVRFI 307
+ AL+R+G + V DT F+ADLTIMEEA E I+R KGE+K P FTSC PGW++F
Sbjct: 184 GQQVAALRRLGFNAVLDTNFAADLTIMEEATELIKRI-KGEVKKPLPQFTSCSPGWIKFC 242
Query: 308 KSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKK-----SEI 362
+ YP L+ ++SS KSP QMFGA+ K+Y+A G PE+I SV++MPC AKK E+
Sbjct: 243 EYFYPELIPNISSCKSPQQMFGALAKTYYARARGIDPENIVSVSVMPCTAKKFEAQRPEM 302
Query: 363 DMELFYGEYAG-HDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGAT 421
+ Y + D+D VLTTRE RMLK I L E DKL + +G +IFGAT
Sbjct: 303 NASAKYWKRGNLRDVDVVLTTRELARMLKEKQIDLTALPEENYDKLMGEETGGAVIFGAT 362
Query: 422 GGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKE-NNLRIAVTSGLA 480
GGVMEAA RTAY+ I G+ PP F + + +G+ EA+ + LR+AV+ G+A
Sbjct: 363 GGVMEAAARTAYFLITGQE-PPALFLNLT-PVRGLAGVKEAAAEIPGVGTLRVAVSHGMA 420
Query: 481 NTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQP---IHESGELAVKRGSNLYFIDKNS 537
N R++++++ G+ + FVE M CPGGC+ GGGQP + S + +R + LY D +
Sbjct: 421 NGRKILNAVREGKAPWHFVEFMTCPGGCIAGGGQPRTAVPPSDTVREQRLAALYKADASL 480
Query: 538 KVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
R S+ENE + ALY DF P S A LLHT++
Sbjct: 481 SKRKSYENEEVAALYRDFLGHPMSELAEELLHTEY 515
>gi|134298338|ref|YP_001111834.1| hydrogenases, Fe-only [Desulfotomaculum reducens MI-1]
gi|134051038|gb|ABO49009.1| hydrogenases, Fe-only [Desulfotomaculum reducens MI-1]
Length = 520
Score = 344 bits (882), Expect = 1e-92, Method: Composition-based stats.
Identities = 200/456 (43%), Positives = 270/456 (59%), Gaps = 31/456 (6%)
Query: 131 PWDKNFPLI-RDSKKCIKCMRCIQVCDKIQSL-NIWELEGTGARTTINVSGSRTIADADC 188
P D N P I RD KKCI C +CI+VC ++Q++ +EL T +N
Sbjct: 68 PIDPNNPSITRDDKKCILCGQCIEVCQRVQTVYGYYELPIKNDITCVN------------ 115
Query: 189 SLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKDASV 248
CGQC CP A+ ERDD +K +A+ N D VVVQ APA R GE G+
Sbjct: 116 --CGQCTLWCPTAAITERDDIDKVVKALENKDLHVVVQTAPATRVGLGEEFGMAPGTFVE 173
Query: 249 NKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCCPGWVRFIK 308
K ALK++G D VFDT FSADLTI EE E I+R S + P FTSC PGWV+F +
Sbjct: 174 GKQVAALKQLGFDAVFDTNFSADLTIFEEGTELIKRISGDLHEPLPQFTSCSPGWVKFCE 233
Query: 309 SQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDMELF- 367
YP L+ H+S+ KSP QM GA++K+Y+A++ G KPE IFSV+IMPC AKK E
Sbjct: 234 YYYPDLLPHMSTCKSPQQMLGALIKTYYAKEKGIKPEKIFSVSIMPCTAKKFEAARPEMN 293
Query: 368 -YGEYAG----HDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATG 422
G++AG D+D VLTTRE R++K+ + L + + D L + +GAG+IFGATG
Sbjct: 294 SSGKHAGKPQLKDVDVVLTTRELARLIKAKGMDLNNLPDKKYDSLMGEGTGAGLIFGATG 353
Query: 423 GVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKE-NNLRIAVTSGLAN 481
GVMEAA+R+AY+ I K PP+A + + G EAS + +++AV GL+N
Sbjct: 354 GVMEAAIRSAYFLIT-KQDPPEALLNLT-PIRGLQGCKEASVDIPGVGTVKVAVVHGLSN 411
Query: 482 TRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQP---IHESGELAVKRGSNLYFIDKN-- 536
R +++++ E + F+E M CPGGC+ GGGQP + S E+ R +++Y D +
Sbjct: 412 ARPILEAVRKKEAPWHFIEFMCCPGGCISGGGQPRTSLPPSDEVRQARINSIYNADAHIY 471
Query: 537 SKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
SK R S+EN+ + ALY F E PNSH AH LLHT +
Sbjct: 472 SK-RKSYENQEVLALYEKFMENPNSHLAHELLHTHY 506
>gi|118444478|ref|YP_878332.1| hydrogenase [Clostridium novyi NT]
gi|118134934|gb|ABK61978.1| hydrogenase [Clostridium novyi NT]
Length = 579
Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats.
Identities = 209/582 (35%), Positives = 309/582 (53%), Gaps = 24/582 (4%)
Query: 2 VNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVEL--EGKEKLI 59
+ +TIDN +I K+N+TI++ A+ I IP LC++K I C +C VE+ + K ++
Sbjct: 4 ITITIDNNEIETKDNLTILDIAKQHNIFIPTLCYIKDPLNIGKCNLCQVEITFDNKTEIK 63
Query: 60 TACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNI- 118
AC + GM + T S V + + ILS+H+ KC C R +C L + +
Sbjct: 64 RACCTRPKNGMKISTCSETVNSSIKNRISEILSEHEFKCFKCSRKFDCELLNIVKKYKVG 123
Query: 119 -QDVLYEEQLEDQPW--DKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTI 175
+ + E++ + ++ +I D KCIKC RC C + L+ +
Sbjct: 124 PKTIYNMNNYEEENYVDTRSKSIIIDRHKCIKCGRCAVTCKNKTNTQAILLKMINGSFKV 183
Query: 176 NVSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAW 235
+ +++ + +C LCGQC+ CPV AL E ++ A+ NP K V+V +AP++R +
Sbjct: 184 KTTDDKSLDETNCLLCGQCVNICPVAALSETPHIDRVLDAINNPKKHVIVAIAPSVRASI 243
Query: 236 GEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPM 295
GE + K++ AL+++G D +FD F ADLTI+EEA E +ER PM
Sbjct: 244 GEAFNMSYGTDVTYKLYTALRKLGFDKIFDLNFGADLTIVEEAEELVERIKNN--GPYPM 301
Query: 296 FTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPC 355
FTSCC WVR ++ + L+ +LSS KSP Q+FGA K+Y+ + P+D+F+V IMPC
Sbjct: 302 FTSCCSAWVRQAENYFKELLPNLSSTKSPQQIFGAASKTYYPHLMNLDPKDVFTVTIMPC 361
Query: 356 VAKKSEIDMELFYGEYA--GHD-MDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDAS 412
AKK E + E A G D +D VLT RE ++++K I L+ D + S
Sbjct: 362 TAKKFEAQRD----EMAVNGVDSIDAVLTARELIKIIKDKKIDFPNLENGVQDPAMGEYS 417
Query: 413 GAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLR 472
GAG IFGATGGVMEAALRTA + K+ +K VR GI E + T+
Sbjct: 418 GAGAIFGATGGVMEAALRTAKELLENKSLDNIDYKEVRGF----KGIKETTVTINNKEYN 473
Query: 473 IAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQP-----IHESGELAVKRG 527
+AV +G +N + I+S +K Y F+E+M+C GGC+ GGG P E + R
Sbjct: 474 LAVINGSSNVFKFINSDMMRKKQYHFIEVMSCEGGCINGGGHPHVNSTTRELVDYKKLRS 533
Query: 528 SNLYFIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLH 569
S LY D N R SHEN I +Y++F KP + AH + H
Sbjct: 534 SVLYNQDLNLPKRKSHENTAIIKMYDNFIGKPGNDFAHKIFH 575
>gi|153807872|ref|ZP_01960540.1| hypothetical protein BACCAC_02158 [Bacteroides caccae ATCC 43185]
gi|149129481|gb|EDM20695.1| hypothetical protein BACCAC_02158 [Bacteroides caccae ATCC 43185]
Length = 459
Score = 342 bits (878), Expect = 3e-92, Method: Composition-based stats.
Identities = 191/442 (43%), Positives = 266/442 (60%), Gaps = 12/442 (2%)
Query: 138 LIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRTIADADCSLCGQCITH 197
++R+ KCI C RC VC+ +Q++ G TTI + R + +++C+ CGQC+
Sbjct: 19 IVRNMDKCIFCRRCESVCNDVQTVGALSAIRRGFNTTIAPAFDRMMTESECTYCGQCVAV 78
Query: 198 CPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKR 257
CPVGAL ERD T + +ANPDKVV+VQ APA+R A GE G K+ AL+
Sbjct: 79 CPVGALTERDYTNRLLDDLANPDKVVIVQTAPAVRAALGEEFGFPPGTVVTGKMVYALRE 138
Query: 258 IGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDK----PMFTSCCPGWVRFIKSQYPH 313
+G DYVFDT F+ADLTIMEE E + R + DK P+ TSCCP WV F + +P
Sbjct: 139 LGFDYVFDTDFAADLTIMEEGSEILNRLTCYLNGDKSVRLPILTSCCPAWVNFFEHHFPD 198
Query: 314 LVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAG 373
L+ S+A+SP QMFG++ KSY+A+K+G E + V+IMPC+AKK E + F + G
Sbjct: 199 LLDIPSTARSPQQMFGSIAKSYWAKKMGIPKEKLVVVSIMPCLAKKYECARDEF--KVNG 256
Query: 374 -HDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTA 432
D+D ++TRE R++K A+I + ++ D +++GAG+IFG TGGVMEAALR+
Sbjct: 257 IPDVDYSISTRELARLIKRANIGFPLVLDSPFDNPMGESTGAGVIFGTTGGVMEAALRSV 316
Query: 433 YYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLANTRRLIDSIEAG 492
Y G++ F+ VR SG+ A+ L L+I + GL N R L++ I G
Sbjct: 317 YEIYTGESLKNVNFEQVRGL----SGVRRATINLNGFELKIGIAHGLGNARHLLEDIRNG 372
Query: 493 EKHYDFVEIMACPGGCVGGGGQPIHE-SGELAVKRGSNLYFIDKNSKVRYSHENECIKAL 551
Y +EIMACPGGC+GGGGQP+H + E+ R + LY D N +R SHEN IK L
Sbjct: 373 HNEYHVIEIMACPGGCIGGGGQPLHHGNSEVLYARANALYREDANKPLRKSHENPYIKTL 432
Query: 552 YNDFFEKPNSHKAHSLLHTDHF 573
Y ++ KP K+ +LLHT +F
Sbjct: 433 YEEYLGKPLGEKSETLLHTHYF 454
>gi|123420195|ref|XP_001305709.1| 64kDa iron hydrogenase, putative [Trichomonas vaginalis G3]
gi|121887244|gb|EAX92779.1| 64kDa iron hydrogenase, putative [Trichomonas vaginalis G3]
Length = 590
Score = 342 bits (878), Expect = 3e-92, Method: Composition-based stats.
Identities = 214/575 (37%), Positives = 312/575 (54%), Gaps = 10/575 (1%)
Query: 2 VNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLITA 61
+ +T++ K+ AK+ TI+E + I IP+LCF + A+CRVC+VE +GK L A
Sbjct: 16 ITVTVNGRKLEAKKGETILELCDRNNIRIPRLCFHPNLPPKASCRVCLVECDGKW-LAPA 74
Query: 62 CNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQDV 121
C +V +G+ + T S V+ ++ +L HD C+ CV + C + + +I+
Sbjct: 75 CVTTVWDGLKIDTKSKMVKESVENNLKELLDCHDETCSSCVANHRCQFRDMNVAYSIKAE 134
Query: 122 LYEEQLEDQPWDKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSR 181
EE E+ + + D+ KC+ C RCI+ C+++ + I + +
Sbjct: 135 TKEECSEEGIDESTNSIRLDTSKCVLCGRCIRACEEVAGQSAIIFGNRAKHMRIQPTFGQ 194
Query: 182 TIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANP-DKVVVVQVAPAIRTAWGEHIG 240
T+ D C CGQC +CPVGA+ E+ ++ ++N K+ V+QVAPA+R A E G
Sbjct: 195 TLQDTSCIKCGQCTLYCPVGAITEKSQVKQALDILSNKGKKISVIQVAPAVRVALSEAFG 254
Query: 241 LDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCC 300
+ K+ ALK +G DYV+DT +SADLTI+EEA E ++R K PMFTSCC
Sbjct: 255 YKEGSVTTGKMVSALKALGFDYVYDTNYSADLTIVEEAGELVQRL-KNPNAVFPMFTSCC 313
Query: 301 PGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKS 360
P WV +++ P + +LSS +SP M +++K+Y + + ED+ + +IMPC AKK
Sbjct: 314 PAWVNYVEQSAPDFIPNLSSCRSPQGMLSSLVKNYLPKVLNIPVEDVLNFSIMPCTAKKD 373
Query: 361 EIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGA 420
EI+ + + D VLT RE V M+K + I L +T D +F SGAG IF A
Sbjct: 374 EIERPELRTKDGHKETDMVLTVRELVEMIKLSGIDFNNLPDTPFDSIFGFGSGAGQIFAA 433
Query: 421 TGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLA 480
TGGVMEAA RTA+ A+ GK VR G A L L+IAV G+A
Sbjct: 434 TGGVMEAASRTAFEAVTGKKLTNVNIYPVRGM----DGTRIAELDLDGTKLKIAVCHGIA 489
Query: 481 NTRRLIDSIEAGEKH---YDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNS 537
NT + +D + A + FVE+MACPGGCV GGG P ++ R + +Y ID
Sbjct: 490 NTAKFLDRLRAKDPQLADLKFVEVMACPGGCVCGGGTPQPKNMMSLDNRLAAIYNIDAKM 549
Query: 538 KVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
+ R SHEN IK +Y +F +PN H AH LLHT +
Sbjct: 550 ECRKSHENPLIKGIYKEFLGEPNGHLAHELLHTHY 584
>gi|123438804|ref|XP_001310180.1| 64kDa iron hydrogenase, putative [Trichomonas vaginalis G3]
gi|121891939|gb|EAX97250.1| 64kDa iron hydrogenase, putative [Trichomonas vaginalis G3]
Length = 591
Score = 340 bits (872), Expect = 1e-91, Method: Composition-based stats.
Identities = 217/580 (37%), Positives = 315/580 (54%), Gaps = 19/580 (3%)
Query: 2 VNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLITA 61
+ +T++ + AK+ T++E + I IP+LCF + A+CRVC+VE +GK L A
Sbjct: 17 ITVTVNGKPLEAKKGETVLELCDRNNIRIPRLCFHPNLPPKASCRVCLVECDGKW-LSPA 75
Query: 62 CNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQDV 121
C +V +G+ + T S VR ++ +L HD C+ C+ + C + D+N+
Sbjct: 76 CVTTVWDGLKIDTKSKNVRDSVENNLKELLDCHDETCSACIANHRCQFR----DMNVAYS 131
Query: 122 LYEEQLE---DQPWDKNFPLIR-DSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINV 177
+ E E ++ D++ IR D+ KC+ C RCI+ C+++ + + I
Sbjct: 132 VKAETKEICSEEGIDESTNAIRLDTSKCVLCGRCIRACEEVAGTSAIIFGNRAKKMRIQP 191
Query: 178 SGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANP-DKVVVVQVAPAIRTAWG 236
+ T+ + C CGQC +CPVGA+ E+ ++ +AN K+ VVQVAPA+R A
Sbjct: 192 TFGVTLQETSCIKCGQCTLYCPVGAITEKSQVKEALDILANKGKKITVVQVAPAVRVALS 251
Query: 237 EHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMF 296
E G + K+ ALK +G D V+DT + ADLTI EEA E + R K PMF
Sbjct: 252 EAFGYKEGTVTTGKMVSALKALGFDLVYDTNYGADLTICEEAGELVNRLRDPNAK-FPMF 310
Query: 297 TSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCV 356
TSCCP WV +++ P + +LSS +SP M A++K+Y + + K ED+ + +IMPC
Sbjct: 311 TSCCPAWVNYVEQSAPDFIPNLSSCRSPQGMLSALIKNYLPKLLDVKQEDVLNFSIMPCT 370
Query: 357 AKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGI 416
AKK E++ + + D VLT RE V M+K ++I L +T+ D +F SGAG
Sbjct: 371 AKKDEVERPELRTKSGLKETDMVLTVRELVEMIKLSNIDFNNLPDTQFDNIFGFGSGAGQ 430
Query: 417 IFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVT 476
IF ATGGVMEAA RTA+ GK VR G+ A L L++AV
Sbjct: 431 IFAATGGVMEAASRTAFEVYTGKKLTNVNIYPVRGM----DGLRIAELDLDGTKLKVAVC 486
Query: 477 SGLANTRRLIDSIEAGEKHY---DFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFI 533
G+ANT +L+D + + F+EIMACPGGCV GGG P ++ R + +Y I
Sbjct: 487 HGIANTAKLLDRLREKDPELMDIKFIEIMACPGGCVCGGGTPQPKNRVSLDNRLAAIYNI 546
Query: 534 DKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDHF 573
D + R SHEN IK +Y +F KPNSH AH LLHT HF
Sbjct: 547 DAKMECRKSHENPLIKGVYKEFLGKPNSHLAHELLHT-HF 585
>gi|11127701|gb|AAG31037.1|AF262401_1 putative 64kDa iron hydrogenase [Trichomonas vaginalis]
Length = 589
Score = 339 bits (870), Expect = 3e-91, Method: Composition-based stats.
Identities = 216/580 (37%), Positives = 315/580 (54%), Gaps = 19/580 (3%)
Query: 2 VNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLITA 61
+ +T++ + AK+ T++E + I IP+LCF + A+CRVC+VE +GK L A
Sbjct: 15 ITVTVNGKPLEAKKGETVLELCDRNNIRIPRLCFHPNLPPKASCRVCLVECDGKW-LSPA 73
Query: 62 CNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQDV 121
C +V +G+ + T S VR ++ +L HD C+ C+ + C + D+N+
Sbjct: 74 CVTTVWDGLKIDTKSKNVRDSVENNLKELLDCHDETCSACIANHRCQFR----DMNVAYS 129
Query: 122 LYEEQLE---DQPWDKNFPLIR-DSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINV 177
+ E E ++ D++ IR D+ KC+ C RCI+ C+++ + + I
Sbjct: 130 VKAETKEICSEEGIDESTNAIRLDTSKCVLCGRCIRACEEVAGTSAIIFGNRAKKMRIQP 189
Query: 178 SGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANP-DKVVVVQVAPAIRTAWG 236
+ T+ + C CGQC +CPVGA+ E+ ++ +AN K+ VVQVAPA+R A
Sbjct: 190 TFGVTLQETSCIKCGQCTLYCPVGAITEKSQVKEALDILANKGKKITVVQVAPAVRVALS 249
Query: 237 EHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMF 296
E G + K+ ALK +G D V+DT + ADLTI EEA E + R K PMF
Sbjct: 250 EAFGYKEGTVTTGKMVSALKALGFDLVYDTNYGADLTICEEAGELVNRLRDPNAK-FPMF 308
Query: 297 TSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCV 356
T+CCP WV +++ P + +LSS +SP M A++K+Y + + K ED+ + +IMPC
Sbjct: 309 TTCCPAWVNYVEQSAPDFIPNLSSCRSPQGMLSALIKNYLPKLLDVKQEDVLNFSIMPCT 368
Query: 357 AKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGI 416
AKK E++ + + D VLT RE V M+K ++I L +T+ D +F SGAG
Sbjct: 369 AKKDEVERPELRTKSGLKETDMVLTVRELVEMIKLSNIDFNNLPDTQFDNIFGFGSGAGQ 428
Query: 417 IFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVT 476
IF ATGGVMEAA RTA+ GK VR G+ A L L++AV
Sbjct: 429 IFAATGGVMEAASRTAFEVYTGKKLTNVNIYPVRGM----DGLRIAELDLDGTKLKVAVC 484
Query: 477 SGLANTRRLIDSIEAGEKHY---DFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFI 533
G+ANT +L+D + + F+EIMACPGGCV GGG P ++ R + +Y I
Sbjct: 485 HGIANTAKLLDRLREKDPELMDIKFIEIMACPGGCVCGGGTPQPKNRVSLDNRLAAIYNI 544
Query: 534 DKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDHF 573
D + R SHEN IK +Y +F KPNSH AH LLHT HF
Sbjct: 545 DAKMECRKSHENPLIKGVYKEFLGKPNSHLAHELLHT-HF 583
>gi|125975482|ref|YP_001039392.1| hydrogenase, Fe-only [Clostridium thermocellum ATCC 27405]
gi|125715707|gb|ABN54199.1| hydrogenase, Fe-only [Clostridium thermocellum ATCC 27405]
Length = 644
Score = 335 bits (860), Expect = 5e-90, Method: Composition-based stats.
Identities = 195/486 (40%), Positives = 275/486 (56%), Gaps = 26/486 (5%)
Query: 97 KCAICVRSGNCTLQTLANDLNIQDVLYEEQLEDQPW----DKNFPLIRDSKKCIKCMRCI 152
KC C C L+ A++ ++YEE + D+P+ D + ++RD KCI C RCI
Sbjct: 76 KCG-CSARFTCDLRKEASN---HGIVYEEPIHDRPYIPKVDDHPFIVRDHNKCISCGRCI 131
Query: 153 QVCDKIQSLNIWELEGTGARTTINVSGSRTIADADCSLCGQCITHCPVGALRERDDTEKF 212
C +I+ + R + + D DC CGQC+T CP AL R + K
Sbjct: 132 AACAEIEGPGVLTFYMKNGRQLVGTKSGLPLRDTDCVSCGQCVTACPCAALDYRRERGKV 191
Query: 213 WRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADL 272
RA+ +P K VV VAPA+R+ G+ ++AS + LK++G D VFD F+ADL
Sbjct: 192 VRAINDPKKTVVGFVAPAVRSLISNTFGVSYEEAS-PFMAGLLKKLGFDKVFDFTFAADL 250
Query: 273 TIMEEAYEFIERF-SKGELKDKPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAV 331
TI+EE EF+ R +KG + P FTSCCPGW+ F++ +YP ++ HLS+ KSP M GA
Sbjct: 251 TIVEETTEFLSRIQNKGVM---PQFTSCCPGWINFVEKRYPEIIPHLSTCKSPQMMMGAT 307
Query: 332 MKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKS 391
+K+++A+ +G ED+F V+I+PC+AKK E F + D+D VLTT E + M++
Sbjct: 308 VKNHYAKLMGINKEDLFVVSIVPCLAKKYEAARPEFIHD-GIRDVDAVLTTTEMLEMMEL 366
Query: 392 AHILPETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRH 451
A I P + E D+ + SGAGI+FGA+GGV EAALR A + GK + H
Sbjct: 367 ADIKPSEVVPQEFDEPYKQVSGAGILFGASGGVAEAALRMAVEKLTGK-------VLTDH 419
Query: 452 SSQEE----SGIIEASFTLKENNLRIAVTSGLANTRRLIDSIEAG-EKHYDFVEIMACPG 506
EE G+ E++ + +R+AV SGL N +I+ I G + YD +E+MACPG
Sbjct: 420 LEFEEIRGFEGVKESTIDVNGTKVRVAVVSGLKNAEPIIEKILNGVDVGYDLIEVMACPG 479
Query: 507 GCVGGGGQPIHESGELAVKRGSNLYFIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHS 566
GC+ G G P+ E + KR L IDK SK R S EN I LYN+F+ +PNS AH
Sbjct: 480 GCICGAGHPVPEKIDSLEKRQQVLVNIDKVSKYRKSQENPDILRLYNEFYGEPNSPLAHE 539
Query: 567 LLHTDH 572
LLHT +
Sbjct: 540 LLHTHY 545
>gi|133908168|gb|ABO42543.1| iron-only hydrogenase large subunit [Clostridium butyricum]
Length = 400
Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats.
Identities = 169/390 (43%), Positives = 235/390 (60%), Gaps = 12/390 (3%)
Query: 185 DADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLK 244
+ +C LCGQC+ CPV AL E+ ++ A+ +P+K V+V +APA+RT+ GE +
Sbjct: 13 ETNCLLCGQCVAACPVAALNEKPHIDRVKEALEDPNKHVIVAMAPAVRTSMGELFKMGYG 72
Query: 245 DASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCCPGWV 304
K++ +L+++G D VFD F AD+TIMEEA EFIER + PMFTSCCP WV
Sbjct: 73 VDVTGKLYSSLRQLGFDKVFDINFGADMTIMEEATEFIERINNN--GPFPMFTSCCPAWV 130
Query: 305 RFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDM 364
R ++ YP L+ +LSSAKSP Q+FGA K+Y+ G P+ +++V IMPC AKK E D
Sbjct: 131 RQAENYYPELLGNLSSAKSPQQIFGAASKTYYPTVEGLDPKSVYTVTIMPCTAKKYEADR 190
Query: 365 ELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATGGV 424
E ++D VLTTRE +M+K A I L++ + D + +GAG+IFGATGGV
Sbjct: 191 TEMENE-GLRNIDAVLTTRELAKMIKDAKINFAALEDEKADPAMGEYTGAGVIFGATGGV 249
Query: 425 MEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLANTRR 484
MEAALR+A + K+ +K VR GI EA+ + N +AV +G AN +
Sbjct: 250 MEAALRSAKDFVEDKDLTDIEYKQVRGL----DGIKEATVEIGGKNYNVAVINGSANLTK 305
Query: 485 LIDSIEAGEKHYDFVEIMACPGGCVGGGGQP-----IHESGELAVKRGSNLYFIDKNSKV 539
++ + EK Y FVE+M+CPGGCV GGGQP ++ + R S LY DK +
Sbjct: 306 FVEGGQMDEKQYHFVEVMSCPGGCVNGGGQPHVAAKDRDTANVRAVRASVLYNQDKTAVK 365
Query: 540 RYSHENECIKALYNDFFEKPNSHKAHSLLH 569
R SH+NE + +YN++ P HKAH LLH
Sbjct: 366 RKSHKNEALMKMYNEYMGMPGQHKAHELLH 395
>gi|109646734|ref|ZP_01370638.1| hydrogenase large subunit-like [Desulfitobacterium hafniense DCB-2]
gi|109641980|gb|EAT51534.1| hydrogenase large subunit-like [Desulfitobacterium hafniense DCB-2]
Length = 1150
Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats.
Identities = 191/523 (36%), Positives = 281/523 (53%), Gaps = 24/523 (4%)
Query: 77 PKVRIDRRRTVQMILSQHDCKCAI--CVRSG-----NCTLQTLANDLNIQDVLYEEQLED 129
P R D R V+ LS+ + C++ G +C L+ A+ + V +++ + +
Sbjct: 553 PAERRDNFREVETGLSEETARAEARRCLKCGCYERYDCDLRQEAS---LHHVEFKKPVHE 609
Query: 130 QPW----DKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRTIAD 185
+P+ + + +IRD KCI C RCI C +++ +I R + +
Sbjct: 610 RPYIPIVEDHSIIIRDHNKCISCGRCIAACAEVEGPDILSFYMKHGRQLVGTKSGLPLDQ 669
Query: 186 ADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKD 245
DC CGQC+ CP GAL R + + +RA+ +P K V VAPA+R+ G+ ++
Sbjct: 670 TDCVSCGQCVNACPCGALDYRSEIGRVFRAINDPGKTTVAFVAPAVRSVVSSQYGVSYQE 729
Query: 246 ASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCCPGWVR 305
AS I LK+IG D VFD F+ADLTI+EE EF+ R K P FTSCCPGWV
Sbjct: 730 AS-RFIAGLLKKIGFDKVFDFTFAADLTIVEETTEFLTRLQSH--KPIPQFTSCCPGWVN 786
Query: 306 FIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDME 365
F++ +YP ++ +LSS KSP M GA +K++F E P+D++ V+I+PC+AKK E
Sbjct: 787 FVERRYPEIIPYLSSCKSPQMMMGATVKNHFTELTEIDPKDLYVVSIVPCIAKKYEAARP 846
Query: 366 LFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATGGVM 425
F E D+D VLT+ E + M I P ++ + + + SGAGI+FGA+GGV
Sbjct: 847 EFRSE-GIRDVDAVLTSTEMLEMADIKLIEPADVEPQDFCEPYKRVSGAGILFGASGGVA 905
Query: 426 EAALRTAYYAIMGKNCPPDA-FKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLANTRR 484
EAALR A + G+ ++ VR GI EA+ K + +AV SGL N
Sbjct: 906 EAALRMAVEKLTGEVLTDQLDYQEVRGL----QGIKEAAVEAKGKKVNVAVISGLHNVEP 961
Query: 485 LIDS-IEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSKVRYSH 543
+++ IE E YD +E+MACPGGC+ G G P+ E + KR L ID+ S+ R S
Sbjct: 962 ILEKIIEGMEVGYDLIEVMACPGGCICGAGHPVPEKIDTLEKRQQVLVNIDQTSRYRKSQ 1021
Query: 544 ENECIKALYNDFFEKPNSHKAHSLLHTDHFIWEMPRSPKRDRK 586
EN I LY++++ + NS AH LLHT + + K DR+
Sbjct: 1022 ENPDILRLYDEYYGEANSPLAHKLLHTHYEAVKREPVAKHDRR 1064
Score = 63.2 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 35/105 (33%), Positives = 64/105 (60%), Gaps = 4/105 (3%)
Query: 2 VNLTIDNIKISAKENMTIMEAAESAGIPIPKLCF-LKGINEIAACRVCVVEL-EGKEKL- 58
+ +T++ ++ ++TI++A I IP LC+ ++ C +CVVEL EG E+
Sbjct: 10 IRVTVNGRQMEVYGDLTILQALLQEDIHIPHLCYDIRLERSNGNCGLCVVELGEGSEQQD 69
Query: 59 ITACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKC-AICV 102
+ AC+ ++EGM+++TNSP++ R+ ++ IL+ H+ C A CV
Sbjct: 70 VKACHTPIQEGMIIHTNSPRLEHYRKIRLEQILADHNADCVAPCV 114
>gi|118443000|ref|YP_877778.1| hydrogenase (Fe) large chain [Clostridium novyi NT]
gi|118133456|gb|ABK60500.1| hydrogenase (Fe) large chain [Clostridium novyi NT]
Length = 443
Score = 315 bits (808), Expect = 5e-84, Method: Composition-based stats.
Identities = 176/432 (40%), Positives = 248/432 (57%), Gaps = 21/432 (4%)
Query: 142 SKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRTIADADCSLCGQCITHCPVG 201
++KC+ C +C +VC + + G V I C CGQCI+ CP+G
Sbjct: 30 TEKCVGCTKCARVCP------VSCISG-------KVKERHVIDTTKCVKCGQCISACPMG 76
Query: 202 ALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKRIGAD 261
AL + + + +A+ DK+V+ QVAPAIR GE+ GL+ K+ AL+ IG D
Sbjct: 77 ALPKINFISEAKKALNQKDKLVITQVAPAIRATLGEYFGLEPGTLVTGKMVAALRAIGFD 136
Query: 262 YVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCCPGWVRFIKSQYPHLVSHLSSA 321
VFDT F+ADLTIMEEA EF R G P+ TSCCPGW+ F + + L SS
Sbjct: 137 KVFDTDFAADLTIMEEATEFAHRLKHG--GKLPILTSCCPGWINFFEHDFRDLADIPSSC 194
Query: 322 KSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAGHDMDCVLT 381
KSP QMFG + K+YFA+K+ +P+DI V+IMPC+AKK E + D+D V++
Sbjct: 195 KSPQQMFGTIAKTYFAQKMNIEPKDIIVVSIMPCLAKKYEAARPEMTTD-GTRDVDIVIS 253
Query: 382 TREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYAIMGKNC 441
T+E ++K +I +L++ + DK ++SGAG IFG +GGV EAA+RTAY I +
Sbjct: 254 TQELAELIKENNIDFNSLEDDDFDKPLGESSGAGTIFGTSGGVAEAAIRTAYELITNETI 313
Query: 442 PPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLANTRRLIDSIEAGEKHYDFVEI 501
P FK VR +G+ EA + ++IA+ +GLA R L++SI GEK+Y +EI
Sbjct: 314 PALEFKGVRGL----NGLKEAEVEINGEKIKIAIANGLATARELLNSIRNGEKNYHLIEI 369
Query: 502 MACPGGCVGGGGQP-IHESGELAVKRGSNLYFIDKNSKVRYSHENECIKALYNDFFEKPN 560
MAC GGC+G G QP I + KR LY D++ +R SHEN + +Y +F +P
Sbjct: 370 MACQGGCIGSGMQPFIKNHCNIIQKRSEALYSEDRHKTLRKSHENPYVLKIYEEFLGEPY 429
Query: 561 SHKAHSLLHTDH 572
KAH LHT++
Sbjct: 430 GEKAHKYLHTEY 441
>gi|154496519|ref|ZP_02035215.1| hypothetical protein BACCAP_00811 [Bacteroides capillosus ATCC
29799]
gi|150274152|gb|EDN01243.1| hypothetical protein BACCAP_00811 [Bacteroides capillosus ATCC
29799]
Length = 449
Score = 315 bits (807), Expect = 5e-84, Method: Composition-based stats.
Identities = 188/446 (42%), Positives = 259/446 (58%), Gaps = 26/446 (5%)
Query: 135 NFPLIRDSKKCIKCMRCIQVCDKIQSLN-IWELEGTGARTTINVSGSRTIADADCSLCGQ 193
N ++R +KCI+C C C + ++ + LE TG + A C CGQ
Sbjct: 7 NPSIVRWEEKCIRCGMCKVACTNLMGVHGTYTLEETGGK-------------AVCIYCGQ 53
Query: 194 CITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFD 253
C CPV ++ ERD+ + +AVA+P+KVVVV +PA+R + GE G+ K+
Sbjct: 54 CANACPVDSITERDECPQVRQAVADPNKVVVVSTSPAVRASLGEEFGMAPGAFVEGKMVA 113
Query: 254 ALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCCPGWVRFIKSQYPH 313
L+ +GADYV DT F+ADLTI+EEA E + R ++G+ + P FTSCCPGWV F + P
Sbjct: 114 LLRALGADYVLDTNFAADLTIVEEASELLRRLTQGD-QPLPQFTSCCPGWVHFAEIYAPE 172
Query: 314 LVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDMELFY--GEY 371
L+ HLS+AKSP+ M G +K+YFA+K+G P I VA+ PC AKK EI E + +Y
Sbjct: 173 LLPHLSTAKSPIGMQGPTVKTYFAQKMGLDPRQIVHVALTPCTAKKFEIRREEMHAAADY 232
Query: 372 AG----HDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATGGVMEA 427
G D D ++TTRE R K+ + L+++ D L ASGAG+IFG TGGVMEA
Sbjct: 233 HGVEGMRDTDQIITTRELARWAKAEGVDWTALEDSPYDSLMGKASGAGVIFGNTGGVMEA 292
Query: 428 ALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLANTRRLID 487
ALRTAY + G+ P ++ E G+ EA L +L +AV G AN R ++
Sbjct: 293 ALRTAYAYLTGQPAPASLLQLSPVRGYE--GVREAQVDLGGQSLNVAVIYGTANARGFLE 350
Query: 488 SIEAGEKHYDFVEIMACPGGCVGGGGQP---IHESGELAVKRGSNLYFIDKNSKVRYSHE 544
++A K Y FVE+MACPGGC+GGGGQP + ++ E R + LY D +R SHE
Sbjct: 351 RMKADGKQYHFVEVMACPGGCIGGGGQPKDIMKDADETRKSRIAALYQRDGAMSLRTSHE 410
Query: 545 NECIKALYNDFFEKPNSHKAHSLLHT 570
N IKA+Y +F+ P S A +LHT
Sbjct: 411 NPEIKAVYEEFYGHPLSEMAEKMLHT 436
>gi|110799819|ref|YP_695522.1| [Fe] hydrogenase [Clostridium perfringens ATCC 13124]
gi|110674466|gb|ABG83453.1| [Fe] hydrogenase [Clostridium perfringens ATCC 13124]
Length = 696
Score = 310 bits (793), Expect = 2e-82, Method: Composition-based stats.
Identities = 187/451 (41%), Positives = 265/451 (58%), Gaps = 25/451 (5%)
Query: 133 DKNFPLI-RDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRTIADADCSLC 191
+K+ P I RD +KCIKC C +C +N + S +T A C C
Sbjct: 14 EKDNPSICRDEEKCIKCGSCKNICTDYIGVNG------------HYSLEKTNDTAVCINC 61
Query: 192 GQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKI 251
GQC CP ++ E D +K A+++ DK+V+V +PA+R + GE ++ K+
Sbjct: 62 GQCANVCPTSSITEVFDYKKVQDAISDKDKIVIVSTSPAVRVSLGEEFNMNDGSFVQGKM 121
Query: 252 FDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCCPGWVRFIKSQY 311
L+++G DYV DT F+AD+TI+EEA E +ER +K K P FTSCCP WV++ ++ +
Sbjct: 122 IALLRKLGFDYVLDTNFAADMTIVEEASELVERITKNN-KPLPQFTSCCPAWVKYAETFH 180
Query: 312 PHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDME------ 365
P ++ H+S++KSP+ M G +K+YFA+K+G P I +VA+ PC AKK EI E
Sbjct: 181 PEILEHISTSKSPIGMQGPTIKTYFAKKMGIDPSKIVNVALTPCTAKKFEIKREEMNASG 240
Query: 366 LFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATGGVM 425
+YG DMD V+TTRE K I +L+++ DKL +ASGAG+IF TGGVM
Sbjct: 241 RYYGIEDMRDMDYVITTREVAIWAKEKEIDFNSLEDSNFDKLMGEASGAGVIFANTGGVM 300
Query: 426 EAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLANTRRL 485
EAALRTAY I ++ P D + + S + G+ EASF + + + IAV G N +
Sbjct: 301 EAALRTAYKYITKEDPPKDFYDL--ESVRGIEGVREASFKINDLEINIAVIYGTENALKF 358
Query: 486 IDSIEAGEKHYDFVEIMACPGGCVGGGGQPIH---ESGELAVKRGSNLYFIDKNSKVRYS 542
I I+ +K Y F+E+M CPGGC+GGGGQP E +L KR LY D + K+R S
Sbjct: 359 ISKIKNSDKKYHFIEVMTCPGGCIGGGGQPKDKKFEGDKLREKRIDGLYKRDSSMKLRVS 418
Query: 543 HENECIKALYNDFFEKPNSHKAHSLLHTDHF 573
+ENE IK LY +F+EKP S+ A +LHT +F
Sbjct: 419 YENEEIKKLYEEFYEKPLSNLAEEMLHTTYF 449
>gi|89893682|ref|YP_517169.1| hypothetical protein DSY0936 [Desulfitobacterium hafniense Y51]
gi|89333130|dbj|BAE82725.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 1150
Score = 309 bits (791), Expect = 5e-82, Method: Composition-based stats.
Identities = 186/522 (35%), Positives = 279/522 (53%), Gaps = 22/522 (4%)
Query: 77 PKVRIDRRRTVQMILSQHDCKCAI--CVRSG-----NCTLQTLANDLNIQDVLYEEQLED 129
P R D R V+ LS+ + C++ G +C L+ A+ + + +++ + +
Sbjct: 553 PAERRDNFREVETGLSEETARAEARRCLKCGCYERYDCDLRQEAS---LHHIEFKKPVHE 609
Query: 130 QPW----DKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRTIAD 185
+P+ + + +IRD KCI C RCI C +++ +I R + +
Sbjct: 610 RPYIPIVEDHSIIIRDHNKCISCGRCIAACAEVEGPDILSFYMKHGRQLVGTKSGLPLDQ 669
Query: 186 ADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKD 245
DC CGQC+ CP GAL R + + +RA+ + K V VAPA+R+ G+ ++
Sbjct: 670 TDCVSCGQCVNACPCGALDYRSEIGRVFRALNDLGKTTVAFVAPAVRSVVSSQYGVSYQE 729
Query: 246 ASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCCPGWVR 305
AS I LK+IG D VFD F+ADLTI+EE EF+ R K P FTSCCPGWV
Sbjct: 730 AS-RFIAGLLKKIGFDKVFDFTFAADLTIVEETTEFLTRLQSH--KRIPQFTSCCPGWVN 786
Query: 306 FIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDME 365
F++ +YP ++ +LSS KSP M GA +K++F E P+D++ V+I+PC+AKK E
Sbjct: 787 FVERRYPEIIPYLSSCKSPQMMMGATVKNHFTELSEIDPKDLYVVSIVPCIAKKYEAARP 846
Query: 366 LFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATGGVM 425
F + D+D VLT+ E + M I P ++ + + + SGAGI+FGA+GGV
Sbjct: 847 EFATD-GIRDVDAVLTSTEMLEMADIKLIEPADVESQDFCEPYKRVSGAGILFGASGGVA 905
Query: 426 EAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLANTRRL 485
EAALR A + G+ ++ + GI EA+ K + +AV SGL N +
Sbjct: 906 EAALRMAVEKLTGEAITD---RLDYQEVRGLQGIKEAAVEAKGKKVNVAVISGLHNVEPI 962
Query: 486 IDSIEAG-EKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSKVRYSHE 544
++ I G E YD +E+MACPGGC+ G G P+ E + KR L ID+ S+ R S E
Sbjct: 963 LEKIIQGTEVGYDLIEVMACPGGCICGAGHPVPEKIDTLEKRQQVLVNIDQTSRYRKSQE 1022
Query: 545 NECIKALYNDFFEKPNSHKAHSLLHTDHFIWEMPRSPKRDRK 586
N I LY++++ + NS AH LLHT + + K DR+
Sbjct: 1023 NPDILRLYDEYYGEANSPLAHKLLHTHYEAVKREPVAKHDRR 1064
Score = 63.2 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 35/105 (33%), Positives = 64/105 (60%), Gaps = 4/105 (3%)
Query: 2 VNLTIDNIKISAKENMTIMEAAESAGIPIPKLCF-LKGINEIAACRVCVVEL-EGKEKL- 58
+ +T++ ++ ++TI++A I IP LC+ ++ C +CVVEL EG E+
Sbjct: 10 IRVTVNGRQMEVYGDLTILQALLQEDIHIPHLCYDIRLERSNGNCGLCVVELGEGSEQQD 69
Query: 59 ITACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKC-AICV 102
+ AC+ ++EGM+++TNSP++ R+ ++ IL+ H+ C A CV
Sbjct: 70 VKACHTPIQEGMIIHTNSPRLEHYRKIRLEQILADHNADCVAPCV 114
>gi|156866470|gb|EDO59842.1| hypothetical protein CLOLEP_03893 [Clostridium leptum DSM 753]
Length = 366
Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats.
Identities = 164/365 (44%), Positives = 228/365 (62%), Gaps = 16/365 (4%)
Query: 215 AVANPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTI 274
A+A+P K VVVQ AP++R A GE G+ + K+ AL+R+G D VFDT F AD+TI
Sbjct: 4 AIADPKKHVVVQTAPSVRAALGEEFGMPIGTNVEGKMVAALRRLGFDKVFDTDFGADMTI 63
Query: 275 MEEAYEFIERFSKGELKDKPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKS 334
MEEA+EFI+R G + P+ TSC PGW++F + YP L+ +LSS KSP QM GA++K+
Sbjct: 64 MEEAHEFIDRVQNGGVL--PLITSCSPGWIKFCEFYYPELLPNLSSCKSPQQMQGALIKT 121
Query: 335 YFAEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAGH--DMDCVLTTREFVRMLKSA 392
++AE P+DI SV++MPC AKK EI + E A D+D VLT RE RM+K A
Sbjct: 122 WYAETHNIDPKDIVSVSVMPCTAKKFEISRD---DENAAGVPDVDVVLTVRELARMIKRA 178
Query: 393 HILPETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHS 452
+I L + + D ++GA +IFGATGGVMEAALRTA + GK+ ++ VR +
Sbjct: 179 NIDLTMLPDEKFDPTMDVSTGAAVIFGATGGVMEAALRTAADTLTGKSLDSIDYEEVRGT 238
Query: 453 SQEESGIIEASFTLKENNLRIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGG 512
GI EA + + ++++AV SGL+N ++ ++ GE Y F+EIM CPGGCV GG
Sbjct: 239 ----DGIKEAVYNVAGMDVKVAVASGLSNANEILKKVKNGEADYHFIEIMCCPGGCVNGG 294
Query: 513 GQPIHESG-----ELAVKRGSNLYFIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSL 567
G PI S ++ +R LY DKN +R SH+N +K Y ++ +P SHKAH +
Sbjct: 295 GMPIQPSSVRNFVDIRKERAKVLYEEDKNLPLRKSHDNPVVKKCYAEYLGEPGSHKAHEI 354
Query: 568 LHTDH 572
LHT +
Sbjct: 355 LHTTY 359
>gi|51244331|ref|YP_064215.1| Fe-center hydrogenase, large subunit [Desulfotalea psychrophila
LSv54]
gi|50875368|emb|CAG35208.1| probable Fe-center hydrogenase, large subunit [Desulfotalea
psychrophila LSv54]
Length = 471
Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats.
Identities = 182/438 (41%), Positives = 238/438 (54%), Gaps = 29/438 (6%)
Query: 141 DSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRTIADADCSLCGQCITHCPV 200
D+ CI C +C+Q+C S + G G R N T+ + P+
Sbjct: 51 DTDACIFCGQCVQICSGYDSDLMSYATGRGKRLQ-NRGMLATVVE-------------PL 96
Query: 201 GALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKRIGA 260
A R D A+A+ + VQ APA+R A GE G+ + K+ AL +G
Sbjct: 97 FAAHYRGDIFPLLAALADDEVSTFVQCAPAVRVALGEEFGMPYGSLTPGKLAAALHALGF 156
Query: 261 DYVFDTAFSADLTIMEEAYEFIERFS-KGELKDKPMFTSCCPGWVRFIKSQYPHLVSHLS 319
V+DT F+ADLTIMEE E I R +G+L PMFTSCCPGWV+F++ QYP L+ HLS
Sbjct: 157 TKVYDTNFAADLTIMEEGAELIARIGGQGKL---PMFTSCCPGWVKFVEDQYPDLLEHLS 213
Query: 320 SAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDM-ELFYGEYAGHDMDC 378
S KSP QM G + K+Y A++ G PE IFS+A+MPC KK E + E+ Y D+D
Sbjct: 214 SCKSPQQMAGTLFKTYGAQEAGIAPEKIFSLAVMPCTCKKFECERPEMAASGY--RDVDL 271
Query: 379 VLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYAIMG 438
V+TTRE ++LK I L + E D SGAG IFG TGGVMEAALR+A + G
Sbjct: 272 VITTRELAQLLKHVGIDFLALADAEFDNPLGCYSGAGNIFGTTGGVMEAALRSACEVLTG 331
Query: 439 KNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLANTRRLIDSIEAGEKHYDF 498
K P VR G+ A+ + LR+A+ +GLA+ L++ + AGE + F
Sbjct: 332 KPLPSVELDYVRGG----EGVRFATVQHEGVELRVAIAAGLADIAPLLEQVRAGEADFQF 387
Query: 499 VEIMACPGGCVGGGGQPI----HESGELAVKRGSNLYFIDKNSKVRYSHENECIKALYND 554
+E+M CP GCV GGGQP + E R + LY DK VR SHEN IK LY
Sbjct: 388 MEVMCCPMGCVSGGGQPKTLLPSQVLEAHAGRRAGLYSHDKALPVRKSHENPEIKKLYEK 447
Query: 555 FFEKPNSHKAHSLLHTDH 572
F +P H+AH LLHTDH
Sbjct: 448 FLGEPLGHQAHELLHTDH 465
>gi|78355522|ref|YP_386971.1| Ferredoxin hydrogenase [Desulfovibrio desulfuricans G20]
gi|78217927|gb|ABB37276.1| Ferredoxin hydrogenase [Desulfovibrio desulfuricans G20]
Length = 458
Score = 298 bits (763), Expect = 7e-79, Method: Composition-based stats.
Identities = 186/465 (40%), Positives = 245/465 (52%), Gaps = 58/465 (12%)
Query: 141 DSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGS-RTIADADCSLCGQCITHCP 199
DS C C RC VC + +EG V G+ +I + C LCGQC+ C
Sbjct: 11 DSDICTGCGRCKDVCP------VGAVEG--------VQGTPHSIREDVCVLCGQCVQQCS 56
Query: 200 VGA---------LRERDDTEKFWRAVANP----------DKVV---------VVQVAPAI 231
A + E+ + + A P +V +VQ APA+
Sbjct: 57 AFASFYEQHPACIAEKKRERGLFVSEAAPLFAAWHTGDAPRVAGRLAEGCHSMVQCAPAV 116
Query: 232 RTAWGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFS-KGEL 290
R A GE G+ + ++ AL+R+G D V+DT F+ADLTIMEE E ++R G L
Sbjct: 117 RAAIGEEFGMPAGALTPGRLAAALRRLGFDRVYDTNFAADLTIMEEGSELLQRMEGAGPL 176
Query: 291 KDKPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSV 350
PMFTSCCP WVR+ + Q+P L+ HLSS KSP QM GAV KSY A+ G P +FSV
Sbjct: 177 ---PMFTSCCPAWVRYAEQQFPDLLEHLSSCKSPQQMAGAVFKSYGAQLDGVDPRQVFSV 233
Query: 351 AIMPCVAKKSEIDMELFYGEYAG-HDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFH 409
A+MPC KK+E E+ G D+D VLTT E ML+ AHI L + D+
Sbjct: 234 AVMPCTCKKAEAQRPGM--EHDGVRDVDAVLTTGELAAMLRQAHIDFAALPDEPFDRPLG 291
Query: 410 DASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKEN 469
SGAG IFG TGGVMEAALRTAY + G+ P VR GI A+ T+
Sbjct: 292 SYSGAGNIFGLTGGVMEAALRTAYELVTGEPVPCTELVYVRGG----EGIRHATLTMDGR 347
Query: 470 NLRIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPI----HESGELAVK 525
R+AV +GL + R L++++ AG +FVE+M CP GC+ GGGQP + E+
Sbjct: 348 TFRVAVVAGLQHVRPLLEAVRAGTCDVNFVEVMCCPQGCISGGGQPKVLLPFQRDEVYAA 407
Query: 526 RGSNLYFIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHT 570
R + LY D R SHEN ++ALY +F +P SH +H+LLHT
Sbjct: 408 RKAALYRHDAELACRKSHENPQVQALYREFLGEPLSHVSHNLLHT 452
>gi|145953834|ref|ZP_01802842.1| hypothetical protein CdifQ_04003849 [Clostridium difficile
QCD-32g58]
Length = 458
Score = 296 bits (758), Expect = 2e-78, Method: Composition-based stats.
Identities = 184/468 (39%), Positives = 251/468 (53%), Gaps = 55/468 (11%)
Query: 141 DSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRTIADADCSLCGQCITHC-- 198
D C C C +VC +N E E G IN+ C +CGQC+ C
Sbjct: 6 DKDLCTGCRECSKVC----PVNAIEGE-EGKPQEINLD--------RCVMCGQCVQTCKS 52
Query: 199 ---------------------------PVGALRERDDTEKFWRAVANPDKVVVVQVAPAI 231
P+ A D +K +A+++P+ +VQ APA+
Sbjct: 53 YASVIDEGFEFLQEKKQEREIPESINEPIFAAYNVCDIDKVKKALSDPNVFTMVQCAPAV 112
Query: 232 RTAWGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELK 291
R A GE G L K+ AL+ + D V+DT F+ADLTIMEE E I+R ++G
Sbjct: 113 RVALGEDFGYYLGYLGAGKMAAALRALNFDRVYDTNFAADLTIMEEGSELIKRVTEG--G 170
Query: 292 DKPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVA 351
PMFTSCCP WV+F++ YP L +HLSS KSP QM GA+ K+Y AE IFSV+
Sbjct: 171 TLPMFTSCCPAWVKFMEKNYPKLTNHLSSCKSPQQMGGAIFKTYGAEINNVDASKIFSVS 230
Query: 352 IMPCVAKKSEIDMELFYGEYAGH-DMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHD 410
IMPC KK E D E + +G+ D+D VLTTRE ++K I + L+E + D
Sbjct: 231 IMPCTCKKYECDREEM--DSSGYRDVDVVLTTRELAYLIKDMGIDFKNLREEKFDSPLGS 288
Query: 411 ASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENN 470
SGAG IFG TGGVMEAA+RT Y I G++ P K VR E+G +++ + + +
Sbjct: 289 YSGAGTIFGVTGGVMEAAIRTGYELITGESIPDVEVKQVRG----ENGFRKSTIKIGDLD 344
Query: 471 LRIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQP---IHESGELAVK-R 526
LR+ V SGL N +++ +E G+ DF+E+M CP GCV GGGQP + E ELA + R
Sbjct: 345 LRVGVVSGLKNVIPVLEDLEKGKLDVDFIEVMTCPVGCVSGGGQPKILLEEYKELAYENR 404
Query: 527 GSNLYFIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDHFI 574
Y D++ +R SHEN IK LY+++ +P K+H LLHT + I
Sbjct: 405 TKATYVHDEHLAIRKSHENPDIKKLYDEYLVEPLGEKSHHLLHTTYCI 452
>gi|126700933|ref|YP_001089830.1| hydrogenase [Clostridium difficile 630]
gi|115252370|emb|CAJ70211.1| hydrogenase [Clostridium difficile 630]
Length = 461
Score = 296 bits (758), Expect = 2e-78, Method: Composition-based stats.
Identities = 184/468 (39%), Positives = 251/468 (53%), Gaps = 55/468 (11%)
Query: 141 DSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRTIADADCSLCGQCITHC-- 198
D C C C +VC +N E E G IN+ C +CGQC+ C
Sbjct: 9 DKDLCTGCRECSKVC----PVNAIEGE-EGKPQEINLD--------RCVMCGQCVQTCKS 55
Query: 199 ---------------------------PVGALRERDDTEKFWRAVANPDKVVVVQVAPAI 231
P+ A D +K +A+++P+ +VQ APA+
Sbjct: 56 YASVIDEGFEFLQEKKQEREIPESINEPIFAAYNVCDIDKVKKALSDPNVFTMVQCAPAV 115
Query: 232 RTAWGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELK 291
R A GE G L K+ AL+ + D V+DT F+ADLTIMEE E I+R ++G
Sbjct: 116 RVALGEDFGYYLGYLGAGKMAAALRALNFDRVYDTNFAADLTIMEEGSELIKRVTEG--G 173
Query: 292 DKPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVA 351
PMFTSCCP WV+F++ YP L +HLSS KSP QM GA+ K+Y AE IFSV+
Sbjct: 174 TLPMFTSCCPAWVKFMEKNYPKLTNHLSSCKSPQQMGGAIFKTYGAEINNVDASKIFSVS 233
Query: 352 IMPCVAKKSEIDMELFYGEYAGH-DMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHD 410
IMPC KK E D E + +G+ D+D VLTTRE ++K I + L+E + D
Sbjct: 234 IMPCTCKKYECDREEM--DSSGYRDVDVVLTTRELAYLIKDMGIDFKNLREEKFDSPLGS 291
Query: 411 ASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENN 470
SGAG IFG TGGVMEAA+RT Y I G++ P K VR E+G +++ + + +
Sbjct: 292 YSGAGTIFGVTGGVMEAAIRTGYELITGESIPDVEVKQVRG----ENGFRKSTIKIGDLD 347
Query: 471 LRIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQP---IHESGELAVK-R 526
LR+ V SGL N +++ +E G+ DF+E+M CP GCV GGGQP + E ELA + R
Sbjct: 348 LRVGVVSGLKNVIPVLEDLEKGKLDVDFIEVMTCPVGCVSGGGQPKILLEEYKELAYENR 407
Query: 527 GSNLYFIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDHFI 574
Y D++ +R SHEN IK LY+++ +P K+H LLHT + I
Sbjct: 408 TKATYVHDEHLAIRKSHENPDIKKLYDEYLVEPLGEKSHHLLHTTYCI 455
>gi|83590717|ref|YP_430726.1| Ferredoxin hydrogenase [Moorella thermoacetica ATCC 39073]
gi|83573631|gb|ABC20183.1| Ferredoxin hydrogenase [Moorella thermoacetica ATCC 39073]
Length = 460
Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats.
Identities = 169/444 (38%), Positives = 243/444 (54%), Gaps = 27/444 (6%)
Query: 137 PLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRTIADADCSLCGQCIT 196
P I + + C+ C +C+Q+C S E A+ R + A
Sbjct: 31 PQIINREICVNCGQCVQICSAYASPYTTSPETMAAKNR-----ERRLLPAAAPE------ 79
Query: 197 HCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALK 256
P+ A E A+A PD VQ APAIR A E GL + +V +I AL+
Sbjct: 80 --PLFAAYNESHEELVREALARPDLFNAVQFAPAIRFALAEDFGLSPQVVTVGRIVAALR 137
Query: 257 RIGADYVFDTAFSADLTIMEEAYEFIERFS-KGELKDKPMFTSCCPGWVRFIKSQYPHLV 315
R+G YV+DT F+ADLT+MEE YE ++R G L P+F+SCCP WV+F++ YP L+
Sbjct: 138 RLGFKYVYDTNFAADLTVMEEGYELLQRLQGDGAL---PLFSSCCPAWVKFVEQAYPQLI 194
Query: 316 SHLSSAKSPMQMFGAVMKSYFAE-KIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAGH 374
++LS+ KSP QM GA+ K+Y + + +F A+MPC+AKK E + G Y G
Sbjct: 195 ANLSTCKSPQQMAGAIFKTYTGQLDPDLRSRHLFVTAVMPCIAKKFECNRPELGGSY-GR 253
Query: 375 DMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYY 434
D+D VLTTRE ++K I +L E EPD+ + SGAG IFG TGGV EA LRTA
Sbjct: 254 DVDAVLTTRELAHLIKDKGIDWHSLAEEEPDQPLGEYSGAGAIFGVTGGVTEAVLRTAAE 313
Query: 435 AIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLANTRRLIDSIEAGEK 494
+ GK F H + +G + + L + L I + +GL N ++D + AG+
Sbjct: 314 VVGGKPLEEIEF----HEVRGMAGTRKVNINLGKEQLEIIIVAGLKNVVPILDDLIAGKA 369
Query: 495 HYDFVEIMACPGGCVGGGGQP--IHES--GELAVKRGSNLYFIDKNSKVRYSHENECIKA 550
+ F+E+MACP GC+ GGGQP + E+ G + +R +++Y D++ VR +HEN IK
Sbjct: 370 SFHFMEVMACPAGCLSGGGQPKILVETYRGSIYRQRAASIYNHDRDLPVRKAHENPAIKQ 429
Query: 551 LYNDFFEKPNSHKAHSLLHTDHFI 574
LY DF +P +H+LLHT + +
Sbjct: 430 LYADFLGQPLGELSHALLHTHYTV 453
>gi|154414518|ref|XP_001580286.1| Iron only hydrogenase large subunit, C-terminal domain containing
protein [Trichomonas vaginalis G3]
gi|121914502|gb|EAY19300.1| Iron only hydrogenase large subunit, C-terminal domain containing
protein [Trichomonas vaginalis G3]
Length = 559
Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats.
Identities = 203/596 (34%), Positives = 299/596 (50%), Gaps = 52/596 (8%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
M++LTI+ + N TI+EA I +P LC + I AC V VV++ G L
Sbjct: 1 MIHLTINGQDAYVRRNTTIIEACRQLNIYVPTLCSHPDLPPIGACGVDVVKVNGSS-LQR 59
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
AC +EGMVV TN+ V+ +Q + +Q + ++ +
Sbjct: 60 ACVTYCQEGMVVETNTMDVKQQSLLNLQKF-------------APATMMQKTPDIEDLWN 106
Query: 121 VLYEEQLEDQPWDKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGS 180
+Q P +N + D+ KCI C CI+ C +Q ++ ++
Sbjct: 107 YYQPKQGLPYPPQQNDSIQWDNTKCINCHLCIRACTNVQQID-------------SIDSV 153
Query: 181 RTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIG 240
D C CG C+T CPV AL + A+A+ DK+ V+Q AP++R E G
Sbjct: 154 THAIDDSCIRCGHCLTVCPVAALTPFPSIGRVLEALAS-DKICVLQTAPSVRVTIAEGFG 212
Query: 241 LDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCC 300
D KI A +++G YVFD + AD TI+EE EF+ R E P FTSCC
Sbjct: 213 HDPGTICTGKIVAAARKMGFKYVFDINYGADQTIIEEGTEFMARLLNHE-APLPQFTSCC 271
Query: 301 PGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKS 360
PGWV F+++++P ++ +LS+AKSP M G +K+YFA+ G PE IF+V++MPC AKK
Sbjct: 272 PGWVNFVETKHPEIIPNLSTAKSPHMMSGVAIKTYFAQVAGIPPEKIFTVSVMPCTAKKD 331
Query: 361 EIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILP-ETLKETEPDKLFHDASGAGIIFG 419
EI+ G +D VLT+ EFV M+K+ + + L ++ D + +++G IFG
Sbjct: 332 EIERPQHKGV-----VDAVLTSVEFVEMIKNNYQFDWDNLPDSPYDNILSESTGGATIFG 386
Query: 420 ATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGL 479
ATGGV EAALR Y + G +++ + G+ A+ + NN+ IAV +G+
Sbjct: 387 ATGGVAEAALRFCYEKMTGLPIG----QLIYSDLRGLDGVKTATVNIAGNNINIAVCNGV 442
Query: 480 ANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHE----SGELAVKRGSNLYFIDK 535
N I+S K + VE+MACPGGCVGGGGQ +H ++ R ++LY IDK
Sbjct: 443 GNAHDFINS--GMYKDFHIVEVMACPGGCVGGGGQVLHSRTVLKKDILQARINSLYAIDK 500
Query: 536 NSKVR---YSHENECIKALYNDFFEKPNSHKAHSLLHTDHFIWEMPRSPKRDRKGY 588
++EN + +Y DF P S + L HT W RS KR + GY
Sbjct: 501 QKIAEGKSTTNENTQLLKMYRDFVGAPYSARVKQLFHT----WYTDRSLKRTQLGY 552
>gi|154421999|ref|XP_001584012.1| TvhydB protein, putative [Trichomonas vaginalis G3]
gi|121918257|gb|EAY23026.1| TvhydB protein, putative [Trichomonas vaginalis G3]
Length = 470
Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats.
Identities = 181/446 (40%), Positives = 249/446 (55%), Gaps = 23/446 (5%)
Query: 141 DSKKCIKCMRCIQVCDKI------QSLNIWELEGTGARTTINVSGSRTIADADCSLCGQC 194
D KCI C C++ C + +S+ I E + G T+ + +A+ +C CGQC
Sbjct: 25 DMHKCINCQACVRACKNVAGQSVLKSVKINEGKKKGVVQTVT---GKLLAETNCIGCGQC 81
Query: 195 ITHCPVGALRERDDTEKFWRAVANP-DKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFD 253
CP A+ E+D ++ N D+++V Q+APAIR E +G+ + S K+
Sbjct: 82 TLVCPTQAIHEKDALKQMNNIFKNKGDRILVCQIAPAIRINMAEGLGVPVGTVSTGKVVT 141
Query: 254 ALKRIGADYVFDTAFSADLTIMEEAYEFIERFS--KGELKDKPMFTSCCPGWVRFIKSQY 311
ALKR+G DYVFDT F ADLTI+EEA E ++R + K L PMFTSCCP WV +++ Y
Sbjct: 142 ALKRLGFDYVFDTNFGADLTIVEEATELLQRLNDPKAVL---PMFTSCCPAWVNYVEKSY 198
Query: 312 PHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEY 371
P + HLS+ +SP+ M AV+K+ F + IG P+ IFSV IMPC AKK E E +
Sbjct: 199 PQWMPHLSTCRSPIGMLSAVIKNVFPKHIGVDPKRIFSVGIMPCTAKKDEAAREQLMTKS 258
Query: 372 AGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATGGVMEAALRT 431
H+ D +T+RE +M+K+A I + L +TE D + A+G G IF ATGGVMEAA+R+
Sbjct: 259 GLHETDLDITSRELAKMIKAAKINFKELPDTELDSPYAMATGGGAIFCATGGVMEAAVRS 318
Query: 432 AYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLANTRRLIDSIEA 491
AY GK P F VR + E GI + + +++AV G+ N LI IE
Sbjct: 319 AYKFATGKELAPIEFVQVRGA---EKGIKVGTVDINGREIKVAVAQGVKNAMSLIKKIEE 375
Query: 492 GE---KHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSKVRYSHENECI 548
G+ K F E+MACPGGCVGGGG P ++ KR Y ID+ SK R +N +
Sbjct: 376 GQDDVKGVVFCEVMACPGGCVGGGGSPRAKTKAAMNKRLDATYRIDRASKYRTPQDNTQL 435
Query: 549 KALYNDFFEKPNSHK-AHSLLHTDHF 573
+ LYN + H AH HT HF
Sbjct: 436 QDLYNAYLGGKFGHGLAHEYFHT-HF 460
>gi|50953715|gb|AAT90438.1| plastid FeFe-hydrogenase precursor [Chlamydomonas moewusii]
Length = 458
Score = 292 bits (747), Expect = 5e-77, Method: Composition-based stats.
Identities = 164/408 (40%), Positives = 230/408 (56%), Gaps = 32/408 (7%)
Query: 204 RERDDTEKFWRAVA------NPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKR 257
++ D W+ VA +K+ VV VAPA+R A E +GL + ++ L+R
Sbjct: 55 KKADAAPAHWQLVAAELVKPKREKLTVVSVAPAVRVAISEALGLAPGAVTPGQLVAGLRR 114
Query: 258 IGADYVFDTAFSADLTIMEEAYEFIERFS---KGELKDK---PMFTSCCPGWVRFIKSQY 311
+G VFDT +ADLTIMEE E + R + +G K + PMFTSCCPGW++ ++ Y
Sbjct: 115 LGFTKVFDTNLAADLTIMEEGTELLHRLADHLEGHPKQEEPMPMFTSCCPGWIQMVEKSY 174
Query: 312 PHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEY 371
P L+ +LSS KSP M GAV+K++FAE+ G KP DI S ++MPCV K+ E D +
Sbjct: 175 PELIPYLSSCKSPQMMMGAVIKNFFAEEAGVKPGDIISCSVMPCVRKQGEADRPMMTTTA 234
Query: 372 AGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATGGVMEAALRT 431
G D+D V+TT E +ML I +L + E D SG G +FG TGGVMEAALRT
Sbjct: 235 EGRDVDHVITTVELAQMLTERGIDLTSLPDEEFDCPLGIGSGGGQLFGTTGGVMEAALRT 294
Query: 432 AYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTL---------------KENNLRIAVT 476
+ G+ F+ VR GI A+ TL K ++RIAV
Sbjct: 295 VVELVSGQPMGRIVFEDVRGL----EGIKAATITLQPAANSPFAKYNPEGKGLDVRIAVA 350
Query: 477 SGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKN 536
+GL N ++LI ++AG YDF+E+MACP GC+GGGGQP ++ KR +Y +D+
Sbjct: 351 NGLGNAKKLITEMKAGTSKYDFIEVMACPSGCIGGGGQPRSADKQILQKRQQAIYTLDER 410
Query: 537 SKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDHFIWEMPRSPKRD 584
+ +R SHEN I ALY + ++P S AH LLHT H++ P +++
Sbjct: 411 AVIRRSHENPIIAALYKRWLQEPCSETAHHLLHT-HYVAGGPAEAQQE 457
>gi|110801841|ref|YP_698262.1| periplasmic [Fe] hydrogenase 1 [Clostridium perfringens SM101]
gi|110682342|gb|ABG85712.1| periplasmic [Fe] hydrogenase 1 [Clostridium perfringens SM101]
Length = 696
Score = 292 bits (747), Expect = 5e-77, Method: Composition-based stats.
Identities = 181/450 (40%), Positives = 257/450 (57%), Gaps = 25/450 (5%)
Query: 133 DKNFPLI-RDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRTIADADCSLC 191
+K+ P I RD +KCIKC C +C +N + S +T A C C
Sbjct: 14 EKDNPSICRDEEKCIKCGSCKNICTDYIGVNG------------HYSLEKTNDIAVCINC 61
Query: 192 GQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKI 251
GQC CP ++ E D +K A+ + DK+V+V +PA+R + GE +D K+
Sbjct: 62 GQCANVCPTSSITEVFDYKKVEDAINDKDKIVIVSTSPAVRVSLGEEFNMDDGSFVQGKM 121
Query: 252 FDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCCPGWVRFIKSQY 311
L+++G YV DT F+AD+TI+EEA E +ER +K K P FTSCCP W+++ ++ +
Sbjct: 122 IALLRKLGFKYVLDTNFAADMTIVEEASELVERITKNN-KPLPQFTSCCPAWIKYAETFH 180
Query: 312 PHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDME------ 365
P ++ H+S++KSP+ M G +K+YFA+ +G P I +VA+ PC AKK EI E
Sbjct: 181 PEILDHISTSKSPIGMQGPTIKTYFAKNMGIDPSKIINVALTPCTAKKFEIKREEMNASG 240
Query: 366 LFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATGGVM 425
+YG DMD V+TTRE K I +L+++ DKL +ASGAG+IF TGGVM
Sbjct: 241 RYYGIEDMRDMDYVITTREVAIWAKEKGIDFNSLEDSNFDKLMGEASGAGVIFANTGGVM 300
Query: 426 EAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLANTRRL 485
EAALRTAY I K P D + + E+ I EASF + + ++ +AV G N +
Sbjct: 301 EAALRTAYKYITKKEPPKDFYDLEAVRGMED--IREASFKINDLDINVAVIYGTENASKF 358
Query: 486 IDSIEAGEKHYDFVEIMACPGGCVGGGGQPIH---ESGELAVKRGSNLYFIDKNSKVRYS 542
I ++ +K Y FVE+M CPGGC+GGGGQP + +L KR LY D + K++ S
Sbjct: 359 ISKMKDSDKKYHFVEVMTCPGGCIGGGGQPKDKNLQGDKLREKRIDGLYRRDSSMKLKVS 418
Query: 543 HENECIKALYNDFFEKPNSHKAHSLLHTDH 572
ENE IK LY +F+ KP S A +LHT +
Sbjct: 419 CENEEIKNLYKEFYGKPLSDLAEKMLHTTY 448
>gi|23664246|gb|AAN39277.1| iron hydrogenase precursor [Neocallimastix frontalis]
Length = 389
Score = 292 bits (747), Expect = 5e-77, Method: Composition-based stats.
Identities = 160/378 (42%), Positives = 221/378 (58%), Gaps = 16/378 (4%)
Query: 205 ERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKRIGADYVF 264
ER++ + R + + K++V APAIR A E D K+ L+++G DY+F
Sbjct: 2 ERNEVIEVLRQLDSKRKILVCSTAPAIRVALAEEFNADPDFNFTGKMVAGLRKLGFDYIF 61
Query: 265 DTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSP 324
DT FSADLTIMEE E I R + G PMFTSCCPGW+ ++ YP L +LS+ KSP
Sbjct: 62 DTNFSADLTIMEEGTELINRLNNG--GKFPMFTSCCPGWINMVEKSYPELRENLSTCKSP 119
Query: 325 MQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDMELFY--GEYAGH--DMDCVL 380
QM GA++KSYFA+K+G EDI V++MPC AKK E F G+ + D+D VL
Sbjct: 120 QQMIGALIKSYFAKKLGVSTEDIIHVSVMPCTAKKGEAKRPEFVQKGKDGKNYPDIDYVL 179
Query: 381 TTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYAIMGKN 440
TTRE + ++K + P L + + D +S AG +FG TGGVMEAA+RTA +N
Sbjct: 180 TTRELLTLMKLKKVNPAELADDKLDSPLGISSSAGNLFGVTGGVMEAAVRTAQIITGVEN 239
Query: 441 -CPPDAFKVVRHSSQEESGIIEASFTLKEN-----NLRIAVTSGLANTRRLIDSIEAGEK 494
P K VR GI A+ LK N+R AV SG AN ++ ++ I+ E
Sbjct: 240 PIPLGELKAVRGLE----GIKAATVPLKTKEGKDINVRAAVVSGGANIQKFLEKIKNKEV 295
Query: 495 HYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSKVRYSHENECIKALYND 554
+DFVE+M CPGGC+ GGGQP ++ K+ +Y +D+ + +R SHENE +K +Y +
Sbjct: 296 EFDFVEMMMCPGGCINGGGQPKSADPKIVTKKMQRMYTMDEQATLRLSHENEEVKQIYKE 355
Query: 555 FFEKPNSHKAHSLLHTDH 572
F +PN H +H LLHT +
Sbjct: 356 FLIEPNGHLSHELLHTHY 373
>gi|150018615|ref|YP_001310869.1| hydrogenase, Fe-only [Clostridium beijerinckii NCIMB 8052]
gi|149905080|gb|ABR35913.1| hydrogenase, Fe-only [Clostridium beijerinckii NCIMB 8052]
Length = 461
Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats.
Identities = 177/465 (38%), Positives = 245/465 (52%), Gaps = 57/465 (12%)
Query: 141 DSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRTIADAD-CSLCGQCITHC- 198
D + C C +C++VC + ++G G D D C CGQCI C
Sbjct: 9 DKELCTGCQQCVEVCP------VNAIQGK--------KGQPQNIDYDVCVSCGQCIQVCN 54
Query: 199 ----------------------------PVGALRERDDTEKFWRAVANPDKVVVVQVAPA 230
PV A + + K A+ + + +VQ APA
Sbjct: 55 SYGFENRENSHLIEEKRRDRGVLESVKEPVFAAFNKGNAAKVKEALHDEELFTIVQCAPA 114
Query: 231 IRTAWGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGEL 290
+R + GE GL + K+ AL+R+G + V+DT F ADLTIMEE E I+R ++G
Sbjct: 115 VRVSLGEEFGLKAGSLTAGKMAAALRRLGFNRVYDTNFGADLTIMEEGSELIKRVTEG-- 172
Query: 291 KDKPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSV 350
+ PMFTSCCP WV+F++ YP L++HLSS KSP QM G + K+Y A+ P+ I++V
Sbjct: 173 GELPMFTSCCPAWVKFMEQSYPELLNHLSSCKSPQQMAGTIFKTYGAKIDKVNPKKIYNV 232
Query: 351 AIMPCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHD 410
AIMPC K+ E D E + D+D V+TTREF ++++ I + LK+ E D
Sbjct: 233 AIMPCTCKQFECDREEMQ-DSGFKDVDIVITTREFAQLIRDNEIDFKNLKDEEFDLPLGS 291
Query: 411 ASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENN 470
+GAG IFG TGGVMEAALR+ Y + K+ P VR S GI A L +
Sbjct: 292 YTGAGNIFGVTGGVMEAALRSGYEMLTKKSIPNLELNFVRGS----EGIRVAEVKLPKIT 347
Query: 471 LRIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQP-----IHESGELAVK 525
L++AV SGL N ++++ I+ G+ +DF+E+M CP GCV GGGQP I L V
Sbjct: 348 LKVAVVSGLKNVVQILEDIKEGKCDFDFIEVMTCPEGCVSGGGQPKFILDIDRRNAL-VS 406
Query: 526 RGSNLYFIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHT 570
R +Y D ++R SHEN IK LY +F +P K+H LLHT
Sbjct: 407 RKKGIYKHDSELEIRKSHENPFIKKLYEEFLIEPLGEKSHHLLHT 451
>gi|51894427|ref|YP_077118.1| iron hydrogenase [Symbiobacterium thermophilum IAM 14863]
gi|51858116|dbj|BAD42274.1| iron hydrogenase [Symbiobacterium thermophilum IAM 14863]
Length = 456
Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats.
Identities = 179/467 (38%), Positives = 246/467 (52%), Gaps = 57/467 (12%)
Query: 141 DSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRTIADAD-CSLCGQCITHCP 199
D + C C RC +VC + G D + C +CGQC+ C
Sbjct: 5 DQELCTGCRRCAEVCP--------------VDAIVGEPGKPQSVDQEICVMCGQCVQVCS 50
Query: 200 -VGAL-------RERDDTEK------------FW---------RAVANPDKVVVVQVAPA 230
G++ RE+ E+ W A+A+PD+ V+VQVAPA
Sbjct: 51 SYGSIWDDGLTPREQKLAERGLLPSVKEPLFAAWNEGRAKLVKEALADPDRYVMVQVAPA 110
Query: 231 IRTAWGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGEL 290
+R A E G+ L + K+ AL+R+G D V+ T F+ADLTIMEE E IER +KG
Sbjct: 111 VRVAIAEEFGMPLGSLAPGKMAAALRRLGFDRVYSTDFTADLTIMEEGNELIERVTKG-- 168
Query: 291 KDKPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSV 350
PMFTSCCP WV++++ YP L+ HLS+ KSP QM GA+ K+Y A+ P ++SV
Sbjct: 169 GTLPMFTSCCPAWVKYLEQTYPELLPHLSTCKSPQQMAGALFKTYGAKVDNVDPAKVYSV 228
Query: 351 AIMPCVAKKSEIDM-ELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFH 409
++MPC K E E+ Y D+D V+TTRE ++K A I L E E D+
Sbjct: 229 SVMPCTCKDFESGRPEMKASGY--RDVDVVITTRELAHLIKDAGIDFNALPEEEYDRPLG 286
Query: 410 DASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKEN 469
+GAG IFGATGGVMEAALRTAY I K P K VR G+ A+ +++
Sbjct: 287 LYTGAGTIFGATGGVMEAALRTAYEVIAKKPIPELDLKFVRGG----EGVRYATVKIEDL 342
Query: 470 NLRIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQP--IHESGELAVK-- 525
L++ V SGL N +++ ++AG+ + F+E+M CP GCV GGGQP + S L +
Sbjct: 343 ELKVCVVSGLKNVAPVLEQVKAGKADFHFMEVMTCPVGCVSGGGQPKALLPSDRLCARMA 402
Query: 526 RGSNLYFIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
R + Y D R S+EN IK +Y +F KP K+H LLHT +
Sbjct: 403 RTESTYRHDAQLPHRKSNENPDIKKIYKEFLGKPLGEKSHHLLHTSY 449
>gi|6650985|gb|AAF22114.1| Fe-only hydrogenase [Megasphaera elsdenii]
Length = 484
Score = 288 bits (737), Expect = 7e-76, Method: Composition-based stats.
Identities = 175/444 (39%), Positives = 250/444 (56%), Gaps = 32/444 (7%)
Query: 141 DSKKCIKCMRCIQVCDKIQS-LNIWELEGTGARTTINVSGSRTIADADCSLCGQCITHCP 199
D KC C C + C Q+ L+ + L TG C CGQC + CP
Sbjct: 27 DVTKCKNCTLCRRACADTQTVLDYYSLSSTGDMPI-------------CVHCGQCSSACP 73
Query: 200 VGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKRIG 259
GA+ E +D +K A+ +P+K+V+ Q APA+R GE G+D K+ AL+ +G
Sbjct: 74 FGAIVEVNDVDKVKAALKDPEKIVIFQTAPAVRVGLGEAFGMDPGTFVEGKMVAALRTLG 133
Query: 260 ADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCCPGWVRFIKSQYPHLVSHLS 319
ADYVFDT F ADLTIMEEA E + R E+ P FTSCCP WV F ++ YP L+ HLS
Sbjct: 134 ADYVFDTDFGADLTIMEEATELLHRLQSEEIP-IPQFTSCCPAWVEFAETFYPDLLQHLS 192
Query: 320 SAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDME------LFYGEYAG 373
S KSP+ + V+K+YFA++ P+ I +V + PC AKK+EI LF+ E
Sbjct: 193 STKSPISILSPVIKTYFAQQKNIDPKKIVNVCVTPCTAKKAEIRRPELSASGLFWDEPEI 252
Query: 374 HDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAY 433
D D +TTRE + ++ +I +L++++ DK F +ASG G IFG +GGVMEAA+RTAY
Sbjct: 253 RDTDICITTRELAQWIQDENIDFASLEDSKFDKAFGEASGGGRIFGNSGGVMEAAIRTAY 312
Query: 434 YAIMGKNCPPD--AFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLANTRRLIDSIEA 491
+ G+ P D F+ VR G+ +A+ L +A SGL N R ID +
Sbjct: 313 HMFTGRPAPKDFIPFEPVRGL----QGVKKATVIFGHFVLHVAAISGLGNARAFIDDLIK 368
Query: 492 GE--KHYDFVEIMACPGGCVGGGGQP---IHESGELAVKRGSNLYFIDKNSKVRYSHENE 546
+ + Y F+E+MACPGGC+GGGGQP + + ++ R +++Y D+ + ++ S +N
Sbjct: 369 NDAFEDYSFIEVMACPGGCIGGGGQPKVKLPQVKKVQEARTASIYKSDEETDIKASWQNP 428
Query: 547 CIKALYNDFFEKPNSHKAHSLLHT 570
I+ LY F ++P S A LHT
Sbjct: 429 EIETLYEAFLDEPLSEMAEFTLHT 452
>gi|123977205|ref|XP_001330775.1| iron hydrogenase [Trichomonas vaginalis G3]
gi|121912586|gb|EAY17406.1| iron hydrogenase [Trichomonas vaginalis G3]
Length = 468
Score = 288 bits (736), Expect = 9e-76, Method: Composition-based stats.
Identities = 176/441 (39%), Positives = 249/441 (56%), Gaps = 17/441 (3%)
Query: 141 DSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRTIADADCSLCGQCITHCPV 200
D KCI C C++ C I N+ + ++ + + +A+ +C CGQC CP
Sbjct: 29 DMTKCINCQSCVRACTNIAGQNVLKSLTVNGKSVVQTVTGKPLAETNCISCGQCTLGCPK 88
Query: 201 GALRERDDTEKFWRAVANPD-KVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKRIG 259
+ E D + + ++ V Q+APAIR E +G+ S+ K+ ALKR+G
Sbjct: 89 FTIFEADAINPVKEVLTKKNGRIAVCQIAPAIRINMAEALGVPAGTISLGKVVTALKRLG 148
Query: 260 ADYVFDTAFSADLTIMEEAYEFIERFSKGELKDK----PMFTSCCPGWVRFIKSQYPHLV 315
DYVFDT F+AD+TI+EEA E ++R S DK PMFTSCCP WV +++ P L+
Sbjct: 149 FDYVFDTNFAADMTIVEEATELVQRLS-----DKNAVLPMFTSCCPAWVNYVEKSDPSLI 203
Query: 316 SHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAGHD 375
HLSS +SPM M +V+K+ F +KIG + I++VAIMPC AKK EI F + +
Sbjct: 204 PHLSSCRSPMSMLSSVIKNVFPKKIGTTADKIYNVAIMPCTAKKDEIQRSQFTMKDGKQE 263
Query: 376 MDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYA 435
VLT+RE +M+K A I + L +T D + +ASG G IF ATGGVMEAA+R+AY
Sbjct: 264 TGAVLTSRELAKMIKEAKINFKELPDTPCDNFYSEASGGGAIFCATGGVMEAAVRSAYKF 323
Query: 436 IMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLANTRRLIDSIEAGEKH 495
+ K P + VR + SG+ A + +++AV G+ N LI I++GE+
Sbjct: 324 LTKKELAPIDLQDVRGVA---SGVKLAEVDIAGTKVKVAVAHGIKNAMTLIKKIKSGEEQ 380
Query: 496 Y---DFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSKVRYSHENECIKALY 552
+ FVE+MACPGGCV GGG P ++ + R + Y IDK+SK R S +N + LY
Sbjct: 381 FKDVKFVEVMACPGGCVVGGGSPKAKTKKAVQARLNATYSIDKSSKHRTSQDNPQLLQLY 440
Query: 553 NDFFE-KPNSHKAHSLLHTDH 572
+ FE K H AH LLHT +
Sbjct: 441 KESFEGKFGGHVAHHLLHTHY 461
>gi|13311187|emb|CAC34419.1| Fe-hydrogenase [Scenedesmus obliquus]
Length = 449
Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats.
Identities = 165/377 (43%), Positives = 223/377 (59%), Gaps = 28/377 (7%)
Query: 221 KVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYE 280
KV++ Q+APA+R A E +GL+ D +V ++ L+ +G DYVFDT F ADLTIMEE E
Sbjct: 70 KVMIAQIAPAVRVAIAETMGLNPGDVTVGQMVTGLRMLGFDYVFDTLFGADLTIMEEGTE 129
Query: 281 FIERFSK------GELKDKPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKS 334
R + + PMFTSCCPGWV ++ P L+ +LSS KSP M GAV+K+
Sbjct: 130 LRHRLQDHLEQHPNKEEPLPMFTSCCPGWVAMVEKSNPELIPYLSSCKSPQMMLGAVIKN 189
Query: 335 YFAEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAG-HDMDCVLTTREFVRMLKSAH 393
YFA + G KPEDI +V++MPCV K+ E D E F AG ++D V+TT E ++
Sbjct: 190 YFAAEAGAKPEDICNVSVMPCVRKQGEADREWFNTTGAGGANVDHVMTTAELGKIFVERG 249
Query: 394 ILPETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSS 453
I L+E+ D + SG G++FG TGGVMEAALRT Y + K P D ++V
Sbjct: 250 IKLNDLQESPFDNPVGEGSGGGVLFGTTGGVMEAALRTVYEVVTQK--PLD--RIVFEDV 305
Query: 454 QEESGIIEASFTLKEN----------------NLRIAVTSGLANTRRLIDSIEAGEKHYD 497
+ GI E++ L L IAV +GL N ++LI + AGE YD
Sbjct: 306 RGLEGIKESTLHLTPGPTSPFKAFAGADGTGITLNIAVANGLGNAKKLIKQLAAGESKYD 365
Query: 498 FVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSKVRYSHENECIKALYNDFFE 557
F+E+MACPGGC+GGGGQP ++ KR + +Y +D+ + +R SHEN I ALY F
Sbjct: 366 FIEVMACPGGCIGGGGQPRSADKQILQKRQAAMYDLDERAVIRRSHENPLIGALYEKFLG 425
Query: 558 KPNSHKAHSLLHTDHFI 574
+PN HKAH LLHT H++
Sbjct: 426 EPNGHKAHELLHT-HYV 441
>gi|9837540|gb|AAG00591.1|AF289201_1 Fe-hydrogenase precursor [Chlamydomonas reinhardtii]
gi|16945126|emb|CAC80065.1| Fe-hydrogenase [Chlamydomonas reinhardtii]
gi|18026270|gb|AAL23572.1| iron-hydrogenase HydA1 [Chlamydomonas reinhardtii]
gi|40736851|emb|CAC83731.1| Fe-hydrogenase [Chlamydomonas reinhardtii]
Length = 497
Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats.
Identities = 165/403 (40%), Positives = 218/403 (54%), Gaps = 50/403 (12%)
Query: 221 KVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYE 280
K V VQVAPA+R A E +GL + ++ + L+R+G D VFDT F ADLTIMEE E
Sbjct: 85 KHVCVQVAPAVRVAIAETLGLAPGATTPKQLAEGLRRLGFDEVFDTLFGADLTIMEEGSE 144
Query: 281 FIERFSKG------ELKDKPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKS 334
+ R ++ + PMFTSCCPGW+ ++ YP L+ ++SS KSP M A++KS
Sbjct: 145 LLHRLTEHLEAHPHSDEPLPMFTSCCPGWIAMLEKSYPDLIPYVSSCKSPQMMLAAMVKS 204
Query: 335 YFAEKIGKKPEDIFSVAIMPCVAKKSEIDMELFY--GEYAGHDMDCVLTTREFVRMLKSA 392
Y AEK G P+D+ V+IMPC K+SE D + F + +D V+TT E + K
Sbjct: 205 YLAEKKGIAPKDMVMVSIMPCTRKQSEADRDWFCVDADPTLRQLDHVITTVELGNIFKER 264
Query: 393 HILPETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVR-H 451
I L E E D SGAG++FG TGGVMEAALRTAY G P + VR
Sbjct: 265 GINLAELPEGEWDNPMGVGSGAGVLFGTTGGVMEAALRTAYELFTGTPLPRLSLSEVRGM 324
Query: 452 SSQEESGIIE------------------------------------ASFTLKEN----NL 471
+E+ I A FT ++ L
Sbjct: 325 DGIKETNITMVPAPGSKFEELLKHRAAARAEAAAHGTPGPLAWDGGAGFTSEDGRGGITL 384
Query: 472 RIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLY 531
R+AV +GL N ++LI ++AGE YDFVEIMACP GCVGGGGQP + KR + LY
Sbjct: 385 RVAVANGLGNAKKLITKMQAGEAKYDFVEIMACPAGCVGGGGQPRSTDKAITQKRQAALY 444
Query: 532 FIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDHFI 574
+D+ S +R SHEN I+ LY+ + +P HKAH LLHT H++
Sbjct: 445 NLDEKSTLRRSHENPSIRELYDTYLGEPLGHKAHELLHT-HYV 486
>gi|1171117|gb|AAC47159.1| iron hydrogenase [Trichomonas vaginalis]
Length = 468
Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats.
Identities = 174/441 (39%), Positives = 248/441 (56%), Gaps = 17/441 (3%)
Query: 141 DSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRTIADADCSLCGQCITHCPV 200
D KCI C C++ C I N+ + ++ + + +A+ +C CGQC CP
Sbjct: 29 DMTKCINCQSCVRACTNIAGQNVLKSLTVNGKSVVQTVTGKPLAETNCISCGQCTLGCPK 88
Query: 201 GALRERDDTEKFWRAVANPD-KVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKRIG 259
+ E D + + ++ V Q+APAIR E +G+ S+ K+ ALKR+G
Sbjct: 89 FTIFEADAINPVKEVLTKKNGRIAVCQIAPAIRINMAEALGVPAGTISLGKVVTALKRLG 148
Query: 260 ADYVFDTAFSADLTIMEEAYEFIERFSKGELKDK----PMFTSCCPGWVRFIKSQYPHLV 315
DYVFDT F+AD+TI+EEA E ++R S DK PMFTSCCP WV +++ P L+
Sbjct: 149 FDYVFDTNFAADMTIVEEATELVQRLS-----DKNAVLPMFTSCCPAWVNYVEKSDPSLI 203
Query: 316 SHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAGHD 375
+LSS +SPM M +V+K+ F +KIG + I++VAIMPC KK EI F + +
Sbjct: 204 PYLSSCRSPMSMLSSVIKNVFPKKIGTTADKIYNVAIMPCTRKKDEIQRSQFTMKDGKQE 263
Query: 376 MDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYA 435
VLT+RE +M+K A I + L +T D + +ASG G IF ATGGVMEAA+R+AY
Sbjct: 264 TGAVLTSRELAKMIKEAKINFKELPDTPCDNFYSEASGGGAIFCATGGVMEAAVRSAYKF 323
Query: 436 IMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLANTRRLIDSIEAGEKH 495
+ K P + VR + SG+ A + +++AV G+ N LI I++GE+
Sbjct: 324 LTKKELAPIDLQDVRGVA---SGVKLAEVDIAGTKVKVAVAHGIKNAMTLIKKIKSGEEQ 380
Query: 496 Y---DFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSKVRYSHENECIKALY 552
+ FVE+MACPGGCV GGG P ++ + R + Y IDK+SK R S +N + LY
Sbjct: 381 FKDVKFVEVMACPGGCVVGGGSPKAKTKKAVQARLNATYSIDKSSKHRTSQDNPQLLQLY 440
Query: 553 NDFFE-KPNSHKAHSLLHTDH 572
+ FE K H AH LLHT +
Sbjct: 441 KESFEGKFGGHVAHHLLHTHY 461
>gi|106886998|ref|ZP_01354322.1| Ferredoxin hydrogenase [Clostridium phytofermentans ISDg]
gi|106765525|gb|EAT22280.1| Ferredoxin hydrogenase [Clostridium phytofermentans ISDg]
Length = 644
Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats.
Identities = 174/437 (39%), Positives = 247/437 (56%), Gaps = 27/437 (6%)
Query: 145 CIKCMRCIQVC--DKIQSLNIWELEGTGARTTINVSGSRTIADADCSLCGQCITHCPVGA 202
CI C +C +VC D I + I C+ CG C++ CPV A
Sbjct: 224 CIGCDKCTKVCPVDCIVG---------------DFKEQHYIDYTRCTHCGACLSTCPVNA 268
Query: 203 LRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKRIGADY 262
+ +++ F R +A P+K+V+ Q+AP++R A GE G + KI L+++G DY
Sbjct: 269 ITSGNNSILFLRDLATPNKIVITQMAPSVRVAIGEAFGFETGANVEKKIAAGLRKLGVDY 328
Query: 263 VFDTAFSADLTIMEEAYEFIERFSKGELKDK----PMFTSCCPGWVRFIKSQYPHLVSHL 318
VFDT ++ADLTIMEEA E ER + DK P+ TSCCP WV+FI+ Y ++
Sbjct: 329 VFDTTWAADLTIMEEANELAERVKRYLEGDKEVKLPILTSCCPAWVKFIEQNYGDMLDVP 388
Query: 319 SSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAGHDMDC 378
S++KSPMQMF AV K + ++ G E I SVAIMPC+AKK E F +D+D
Sbjct: 389 STSKSPMQMFAAVAKDLWGKEKGLSREQITSVAIMPCIAKKYEASRPEF-SRGLNYDVDY 447
Query: 379 VLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYAIMG 438
V+TT E + + K ++I L++ E D++ + +GAGIIFG TGGV+EAA RTA I G
Sbjct: 448 VITTTELIDIFKKSNIDLSQLEDEEIDQVMGEYTGAGIIFGRTGGVIEAATRTAVELITG 507
Query: 439 KNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLANTRRLIDSIEAGEKHYDF 498
+ F +R G T+ + LRI VT GL R+++D I +GE+ Y
Sbjct: 508 QRVDNIEFTSLRGF----DGFRSCELTVGDLTLRIGVTYGLKEARKMLDKIRSGEEFYHA 563
Query: 499 VEIMACPGGCVGGGGQPIHESGELAVK-RGSNLYFIDKNSKVRYSHENECIKALYNDFFE 557
+EIMAC GGC+GGGGQP + E +K R L ID++ +R S++N + A+Y F +
Sbjct: 564 IEIMACTGGCIGGGGQPRAKKREETIKSRMEGLNEIDRSLPLRRSNDNPAVLAIYEKFLD 623
Query: 558 KPNSHKAHSLLHTDHFI 574
P S+KA LLHT +F+
Sbjct: 624 YPLSNKAQELLHTRYFV 640
>gi|114567439|ref|YP_754593.1| Ferredoxin hydrogenase [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|114338374|gb|ABI69222.1| Ferredoxin hydrogenase [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
Length = 387
Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats.
Identities = 158/390 (40%), Positives = 218/390 (55%), Gaps = 25/390 (6%)
Query: 138 LIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRTIADADCSLCGQCITH 197
+I S C C C +C TGA + + I+ C CGQC+ +
Sbjct: 9 VIHVSDDCKACDHCTFICP------------TGA-ISGELGQKHHISPKKCINCGQCLIN 55
Query: 198 CPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKR 257
CP A+ E E+ +A+A+ K VVVQ APA+R A GE G NK++ AL++
Sbjct: 56 CPFNAIDEFSRVEELKKALADSQKFVVVQEAPAVRVALGEEFGQAPGTNVKNKMYAALRK 115
Query: 258 IGADYVFDTAFSADLTIMEEAYEFIERFSK-------GELKDKPMFTSCCPGWVRFIKSQ 310
+G D V+DT F+ADLTIMEE E I R E+ P FTSCCP W+++ +
Sbjct: 116 LGFDKVYDTEFTADLTIMEEGTELIHRVYGFLGVPGFEEVGPLPQFTSCCPAWIKYAEDN 175
Query: 311 YPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGE 370
YP ++ H+SSAKSP QM+GAV K+Y AEK+ P ++FSV++MPC AKK E + F
Sbjct: 176 YPLVLPHISSAKSPQQMWGAVAKTYLAEKLNVDPANMFSVSVMPCTAKKYECERPEFIA- 234
Query: 371 YAGH-DMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATGGVMEAAL 429
+GH D+D V+TTRE +M+K A I L + E D+ ++GA IFGATGGVMEAAL
Sbjct: 235 -SGHQDVDLVITTRELAQMIKDAGIDFMGLPDEEADRFVGLSTGAATIFGATGGVMEAAL 293
Query: 430 RTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIA--VTSGLANTRRLID 487
RTAY + G++ F VR +E +L ++ V +G + +I+
Sbjct: 294 RTAYEILSGESLGKVEFDAVRGLDPVREATVEVPVKALGTSLPVSVCVVTGTKHVANVIE 353
Query: 488 SIEAGEKHYDFVEIMACPGGCVGGGGQPIH 517
+ AG Y F+E+M CPGGC+ GGGQPIH
Sbjct: 354 DVLAGRSKYHFIEVMNCPGGCINGGGQPIH 383
>gi|18073435|emb|CAC83291.1| Fe-hydrogenase ['Chlorella' fusca]
gi|21732235|emb|CAC83290.1| Fe-hydrogenase ['Chlorella' fusca]
Length = 436
Score = 282 bits (721), Expect = 5e-74, Method: Composition-based stats.
Identities = 161/382 (42%), Positives = 223/382 (58%), Gaps = 28/382 (7%)
Query: 221 KVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYE 280
++++ Q+A A+R A E IGL D ++ ++ L+ +G DYVFDT F ADLTIMEE E
Sbjct: 56 RLMIAQIASAVRVAIAETIGLAPGDVTIGQLVTGLRMLGFDYVFDTLFGADLTIMEEGTE 115
Query: 281 FIERFSK------GELKDKPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKS 334
+ R + + PMFTSCCPGWV ++ P L+ +LSS KSP M GAV+K+
Sbjct: 116 LLHRLQDHLEQHPNKEEPLPMFTSCCPGWVAMVEKSNPELIPYLSSCKSPQMMLGAVIKN 175
Query: 335 YFAEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAG--HDMDCVLTTREFVRMLKSA 392
Y+A+++G +P DI +V++MPCV K+ E D E F AG D+D V+TT E ++
Sbjct: 176 YYAQQVGVQPSDICNVSVMPCVRKQGEADREWFNTTGAGLARDVDHVVTTAEVGKIFLER 235
Query: 393 HILPETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHS 452
I L E+ D + +G ++FG TGGVMEAALRT Y + K F+ VR
Sbjct: 236 GIKLNELPESNFDNPIGEGTGGALLFGTTGGVMEAALRTVYEVVTQKPMGRVDFEEVRGL 295
Query: 453 SQEESGIIEASFTLKENN----------------LRIAVTSGLANTRRLIDSIEAGEKHY 496
GI EA TLK + L+IAV +GL N ++LI S+ G+ Y
Sbjct: 296 E----GIKEAEITLKPGDDSPFKAFAGADGQGITLKIAVANGLGNAKKLIKSLSEGKAKY 351
Query: 497 DFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSKVRYSHENECIKALYNDFF 556
DF+E+MACPGGC+GGGGQP ++ KR +Y +D+ S +R SH+N I+ALY+ F
Sbjct: 352 DFIEVMACPGGCIGGGGQPRSTDKQILQKRQQAMYNLDERSTIRRSHDNPFIQALYDKFL 411
Query: 557 EKPNSHKAHSLLHTDHFIWEMP 578
PNSHKAH LLHT + +P
Sbjct: 412 GAPNSHKAHDLLHTHYVAGGIP 433
>gi|153953475|ref|YP_001394240.1| Predicted Fe-Fe hydrogenase 2 [Clostridium kluyveri DSM 555]
gi|146346356|gb|EDK32892.1| Predicted Fe-Fe hydrogenase 2 [Clostridium kluyveri DSM 555]
Length = 457
Score = 282 bits (721), Expect = 6e-74, Method: Composition-based stats.
Identities = 176/447 (39%), Positives = 240/447 (53%), Gaps = 31/447 (6%)
Query: 133 DKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRTIADADCSLCG 192
+K P D +KCI C +CIQ+C S I++ T + G D
Sbjct: 27 NKGEPQAIDMEKCIMCGQCIQICKGYYS--IYDDVATPVSKKLFDRGLLDNVDE------ 78
Query: 193 QCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIF 252
P+ A + + N D +VQ APA+R A GE GL S K+
Sbjct: 79 ------PLFAAYSTSRIKNVKEILRNTDVFKIVQCAPAVRVAIGEEFGLPFGTLSEGKMA 132
Query: 253 DALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCCPGWVRFIKSQYP 312
L++IG D V+DT F ADLTIMEE E ++R +KG PMFTSCCP WV++++ YP
Sbjct: 133 VVLRKIGFDRVYDTNFGADLTIMEEGSELLDRITKG--GTLPMFTSCCPAWVKYMEQTYP 190
Query: 313 HLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDM-ELFYGEY 371
L+ HLSS KSP QM GA+ KSY AE P I++VA+MPC K+ E + E+ EY
Sbjct: 191 ELLPHLSSCKSPQQMAGAIFKSYGAEINKVNPAKIYNVAVMPCTCKEFESEREEMSCNEY 250
Query: 372 AGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATGGVMEAALRT 431
+D V+TTRE ++K A I TL + + D + +GAG IFG+TGGVMEAALRT
Sbjct: 251 --RSVDIVITTRELAHLIKDADIDFNTLSDDKFDDVLGMYTGAGTIFGSTGGVMEAALRT 308
Query: 432 AYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLANTRRLIDSIEA 491
Y K+ P +R G A L + L++ + SGL + ++++D I+
Sbjct: 309 GYELYTKKSIPKIELTDIRGG----QGFRTAEVELGDFKLKVGIVSGLKHVKKVLDMIKK 364
Query: 492 GEKHYDFVEIMACPGGCVGGGGQP--IHESGEL----AVKRGSNLYFIDKNSKVRYSHEN 545
G+ F+E+M CP GCV GGGQP I ES + A KRG LY D + R SHEN
Sbjct: 365 GKCDMHFIEVMTCPEGCVSGGGQPKIIFESDKNIAYDARKRG--LYNHDSSLPYRKSHEN 422
Query: 546 ECIKALYNDFFEKPNSHKAHSLLHTDH 572
I+ LY++F +P +K+H LLHT +
Sbjct: 423 PGIQKLYSEFLGEPLGYKSHELLHTKY 449
>gi|123479045|ref|XP_001322682.1| Iron only hydrogenase large subunit, C-terminal domain containing
protein [Trichomonas vaginalis G3]
gi|121905533|gb|EAY10459.1| Iron only hydrogenase large subunit, C-terminal domain containing
protein [Trichomonas vaginalis G3]
Length = 1102
Score = 281 bits (718), Expect = 1e-73, Method: Composition-based stats.
Identities = 177/576 (30%), Positives = 288/576 (50%), Gaps = 49/576 (8%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
M+++TI+ ++S K+ I++A GI +P LC I C +CVV++ G +
Sbjct: 1 MLSVTINGKQVSCKKGTFILQACTDNGIYVPTLCAHPDIPPAGNCGLCVVKVNGNSYEL- 59
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
AC+ V GMV+ T++P+V+ +R++ + + +D + + I+D
Sbjct: 60 ACSTKVTNGMVIETDTPEVK---KRSLDALNAFND-------------MPLMPGSKEIED 103
Query: 121 VLYEEQLEDQP-----WDKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTI 175
+ Y+ + +P +K L D + C+ C RC++VC +Q + + E
Sbjct: 104 I-YKYLIPKRPIRGRKAEKTNALSFDPETCVNCGRCVRVCGDMQYIGALDEE-------- 154
Query: 176 NVSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAW 235
S ++ D DC CG C T CP L RA+A K++V+Q+ P+ +
Sbjct: 155 ----SHSLNDNDCIQCGMCTTVCPTDCLTYNSSISSIIRAMA-AGKILVLQIHPSSSVSL 209
Query: 236 GEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPM 295
GE G + KI A + IG YVFD F D+ I+E A+E + + S + PM
Sbjct: 210 GELFGEKIGVDCTKKIIGAAREIGFRYVFDVNFGGDINIIETAHELLHKLSL-QPDSLPM 268
Query: 296 FTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPC 355
FTS CP WV F++ +P L+ +LS+ KSP + ++++Y+A + +F V+++PC
Sbjct: 269 FTSWCPAWVNFVEKLHPELIPNLSTVKSPHILLSVIIRNYYAHLKEIDLQKLFIVSLLPC 328
Query: 356 VAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAG 415
A K EI E +DCVLTTREF ++K I L E D++ ++SG+
Sbjct: 329 TANKDEIKREQL-----SETVDCVLTTREFGELIKKFDIDWTELHPGEFDEILGESSGSA 383
Query: 416 IIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAV 475
++G +GG +EA R Y + GK+ V H + + I EAS L V
Sbjct: 384 ALYGVSGGALEATARYLYENLTGKSLG----DVKYHQWRGKDDIREASVDFNGRILNSCV 439
Query: 476 TSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDK 535
+G+A R LI+S K Y F++++ACP GC+ GGGQP + + A+ R +Y +D+
Sbjct: 440 CNGVAAARELIES--GNYKKYQFIDVVACPDGCIAGGGQPKLHNKKNALPRTEAIYQMDE 497
Query: 536 NSKVRYS-HENECIKALYNDFFEKPNSHKAHSLLHT 570
+ R + H N+ + +Y+DF P A SL HT
Sbjct: 498 SKPDRPTPHNNKALLKIYDDFIGNPYDDFAQSLFHT 533
>gi|150016647|ref|YP_001308901.1| hydrogenase, Fe-only [Clostridium beijerinckii NCIMB 8052]
gi|149903112|gb|ABR33945.1| hydrogenase, Fe-only [Clostridium beijerinckii NCIMB 8052]
Length = 644
Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats.
Identities = 176/447 (39%), Positives = 258/447 (57%), Gaps = 28/447 (6%)
Query: 142 SKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRTIADADCSLCGQCITHCPVG 201
+KKCI C C + C + +N EL+ I C+ CG C++ CPV
Sbjct: 219 TKKCIGCGACKRAC-PVDCIN-GELKK-----------KHEIDYNRCTHCGACVSACPVD 265
Query: 202 ALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKRIGAD 261
A+ D+T F R +A P+KVV+ Q+APA+R A GE G + + KI L+++G D
Sbjct: 266 AISAGDNTMLFLRDLATPNKVVITQMAPAVRVAIGEAFGFEPGENVEKKIAAGLRKLGVD 325
Query: 262 YVFDTAFSADLTIMEEAYEFIERFSKGELKDK----PMFTSCCPGWVRFIKSQYPHLVSH 317
YVFDT++ ADLTIMEEA E ER + D+ P+ TSCCP W++FI+ Y ++
Sbjct: 326 YVFDTSWGADLTIMEEAAELQERLERHLAGDESVKLPILTSCCPSWIKFIEQNYGDMLDV 385
Query: 318 LSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAGHDMD 377
SSAKSPM+MF V K +A++ G +++ SVAIMPC+AKK E F + +D+D
Sbjct: 386 PSSAKSPMEMFAIVAKEIWAKEKGLSRDEVTSVAIMPCIAKKYEASRAEFSVD-MNYDVD 444
Query: 378 CVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYAIM 437
V+TTRE +++ +++ I + +++ E D + + +GAGIIFG TGGV+EAA RTA +
Sbjct: 445 YVITTRELIKIFENSGINLKEIEDEEIDTVMGEYTGAGIIFGRTGGVIEAATRTALEKMT 504
Query: 438 GKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLANTRRLIDSIEAGEKHYD 497
G+ F+ +R +EA + LRI V GL +++D I +GE+ +
Sbjct: 505 GERFDNIEFEGLRGWDGFRVCELEAG----DIKLRIGVAHGLREAAKMLDKIRSGEEFFH 560
Query: 498 FVEIMACPGGCVGGGGQPIHESGELAV--KRGSNLYFIDKNSKVRYSHENECIKALYNDF 555
+EIMAC GGC+GGGGQP + + A KR L ID++ +R S+EN + A+Y +
Sbjct: 561 AIEIMACVGGCIGGGGQPKTKGNKQAALQKRAEGLNNIDRSKTLRRSNENPEVLAIYEKY 620
Query: 556 FEKPNSHKAHSLLHTDHFIWEMPRSPK 582
+ P S+KAH LLHT +F PR K
Sbjct: 621 LDHPLSNKAHELLHTVYF----PRVKK 643
>gi|4029298|emb|CAA76342.1| hydrogenase [Nyctotherus ovalis]
Length = 456
Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats.
Identities = 159/444 (35%), Positives = 244/444 (54%), Gaps = 32/444 (7%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAA-CRVCVVELEGKEKL- 58
M++L ID IS + + + +A + AG +P +C+ + CRVC+VE
Sbjct: 22 MISLKIDGKIISVPKGIMLADAIKKAGANVPTMCYHPDLPTSGGICRVCLVESAKSPGYP 81
Query: 59 ITACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNI 118
I +C VEEGM + T K++ R+ + ++LS+H C C + NC Q L+ ++NI
Sbjct: 82 IISCRTPVEEGMEIVTQGSKMKEYRQANLALMLSRHPNACLSCTSNTNCKTQELSANMNI 141
Query: 119 QDVLYEEQL---EDQPWDKNFPLIRDSKKCIKCMRCIQVCD--KIQSLNIWELEGTGART 173
+ D +D + RD+ KCI C C+ C + +L + EG ++
Sbjct: 142 GQCGFANATPPKNDDSYDMTTAIERDNDKCINCDICVHTCSLQGLNALGFYNEEGHAVKS 201
Query: 174 --TINVSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAI 231
T++VS +C CGQCI CP GA+ E+ + A+ N + +V Q+AP+I
Sbjct: 202 MGTLDVS--------ECIQCGQCINRCPTGAITEKSEIRPVLDAI-NIQQRLVFQMAPSI 252
Query: 232 RTAWGEHIGLDLKDASV-NKIFDALKRIGAD-YVFDTAFSADLTIMEEAYEFIERFSKGE 289
R A E G+ + + N+I AL+++G++ +V DT FSADLTI+EE +E IER +
Sbjct: 253 RVAVAEEFGIKPGEKILKNEIATALRKLGSNVFVLDTNFSADLTIIEEGHELIERLYRNV 312
Query: 290 LKDK-----------PMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAE 338
K PM TSCCPGW+ FI+ YP L+++LS+ KSP M GA++K Y+A+
Sbjct: 313 TGKKLLGGDHMPIDLPMLTSCCPGWIMFIEKNYPDLLNNLSTCKSPQGMLGALIKGYWAK 372
Query: 339 KIGK-KPEDIFSVAIMPCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPE 397
I K P+DI SV+IMPC AKK+E + G+ D+D +LTTRE +MLK ++I
Sbjct: 373 NIKKMDPKDIVSVSIMPCTAKKAEKERPQLRGDEGYKDVDYILTTRELAKMLKQSNIDLA 432
Query: 398 TLKETEPDKLFHDASGAGIIFGAT 421
++ T DK+ + +GA +IFG T
Sbjct: 433 KMEPTPFDKVMSEGTGAAVIFGVT 456
>gi|123505468|ref|XP_001328981.1| Iron only hydrogenase large subunit, C-terminal domain containing
protein [Trichomonas vaginalis G3]
gi|121911931|gb|EAY16758.1| Iron only hydrogenase large subunit, C-terminal domain containing
protein [Trichomonas vaginalis G3]
Length = 541
Score = 269 bits (687), Expect = 4e-70, Method: Composition-based stats.
Identities = 183/590 (31%), Positives = 287/590 (48%), Gaps = 72/590 (12%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
M+++ ID + K+ TI++ G+ IP LC + IA C VCVV++ G +
Sbjct: 1 MLSIKIDGKEYQEKKGQTILQVCNKHGVYIPTLCNHPDLPPIAHCGVCVVKINGN-NFVL 59
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLN-IQ 119
+C++ + GM + T +P+++ +Q + T+ ++ +
Sbjct: 60 SCSHKIAAGMEIETGTPEIKAKALDALQNF--------------SDVTMMPKTPEIEELY 105
Query: 120 DVLYEEQLEDQPWDKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSG 179
L + + K + D CI+C RC + C IQ+++ + +
Sbjct: 106 TYLKPARKVNMTPQKLTSISFDPGLCIQCDRCTRACSDIQAMDAIQED------------ 153
Query: 180 SRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHI 239
+ I D DC CGQC CP A+ E K +A+A ++++Q AP++R GE
Sbjct: 154 THQIIDFDCIQCGQCANVCPTNAIYETPAIPKVIQALAK-GYIMIMQFAPSVRVTMGEMF 212
Query: 240 GLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSC 299
G + KI A + +G YVFD A+ AD+T++EE E + + E PMFTSC
Sbjct: 213 GDEPGTICTGKIIAASRMMGFRYVFDIAYGADITVLEEGAELVHKIQNNE--KLPMFTSC 270
Query: 300 CPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKK 359
CP WV F++ ++P L+ LS+AKSP M A +K+ FA+ P IF V++MPC AKK
Sbjct: 271 CPSWVNFVERKHPELIPQLSTAKSPHMMSAAAIKTVFADVNNIDPSKIFLVSMMPCTAKK 330
Query: 360 SEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEP---DKLFHDASGAGI 416
EI G+ +D V+T REF +M+K+ I TL DK+ ++SG G
Sbjct: 331 DEIIRTPLQGQ-----VDAVITAREFGQMIKTFDIDWSTLDSDHTAAFDKMMGESSGGGN 385
Query: 417 IFGATGGVMEAALRTAYYAIMGKN--CPPDAFKVVRHSSQEESGIIEASFTLKENNLRIA 474
IFG +GGVME+ +R + G+ PPD R S+E + A + + +I
Sbjct: 386 IFGVSGGVMESTMRYVSEKLTGQTLVSPPD----FRQISEE---MRSAEVQIGDRTFKIG 438
Query: 475 VTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVK----RGSNL 530
+ G+A + L++S E + YDF+E+MACP GC+ GGG P +L +K R L
Sbjct: 439 ICGGIAAAKDLLESGEFDD--YDFIEVMACPRGCISGGGHP-----KLPIKRIPERAKAL 491
Query: 531 YFID-------KNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDHF 573
Y ID K S ++ EC + L E+ N+ + + HT HF
Sbjct: 492 YNIDGKKGEMNKLSALKNEEAAECYRIL-----EEKNADLKNHIFHT-HF 535
>gi|78357324|ref|YP_388773.1| Ferredoxin hydrogenase [Desulfovibrio desulfuricans G20]
gi|78219729|gb|ABB39078.1| Ferredoxin hydrogenase [Desulfovibrio desulfuricans G20]
Length = 439
Score = 266 bits (679), Expect = 4e-69, Method: Composition-based stats.
Identities = 154/386 (39%), Positives = 213/386 (55%), Gaps = 24/386 (6%)
Query: 141 DSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRTIAD-ADCSLCGQCITHCP 199
D KC+ C C C TG + G R + D C CGQC+ +CP
Sbjct: 52 DHDKCMACGECEYHCP------------TGVMQEVTEDGYRGVVDPVACVNCGQCLANCP 99
Query: 200 VGALRERDD-TEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKRI 258
GA+ E + + + +PD VVV APA+R A GE GL ++ AL+R+
Sbjct: 100 FGAIHEEVSFVGELYEKLKDPDTVVVSMPAPAVRYALGECFGLPTGTYVGGQMHAALRRL 159
Query: 259 GADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCCPGWVRFIKSQYPHLVSHL 318
G + V+DT ++AD+TIMEE E +ER G + P FTSCCPGW++F ++ YP L HL
Sbjct: 160 GFNLVWDTEWTADVTIMEEGTELLERVKHGNMP-LPQFTSCCPGWIKFAETFYPDLEKHL 218
Query: 319 SSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSE-IDMELFYGEYAGHDMD 377
S+ KSP+ M G + K+Y A++ G + +++V+IMPC+AKK E + E+ Y D+D
Sbjct: 219 STCKSPIAMIGPLAKTYGAQEAGVPAKKMYTVSIMPCIAKKFEGMRPEMNASGY--RDID 276
Query: 378 CVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYAIM 437
+TTRE M+K A I +L EPD ++GA IF +GGVMEAALR AY A+
Sbjct: 277 ATITTRELAWMIKKAGIDFTSLPSEEPDPALGMSTGAATIFCTSGGVMEAALRLAYEALS 336
Query: 438 GKNCPPDAFKVVRHSSQEESGIIEASFTLKE-NNLRIAVTSGLANTRRLIDSIEAGEKHY 496
G KVVR GI A + +++AV SGL N +L + + AG+ Y
Sbjct: 337 GGTLADPDIKVVR----THEGINTAEVPVPNFGTVKVAVASGLDNAAKLCEEVRAGKSPY 392
Query: 497 DFVEIMACPGGCVGGGGQPIHESGEL 522
F+E+M CPGGCV GGGQP+ E G L
Sbjct: 393 HFIEVMTCPGGCVNGGGQPL-EPGML 417
>gi|1914864|emb|CAA72423.1| cytochrome-c3 hydrogenase [Desulfovibrio fructosovorans]
Length = 421
Score = 265 bits (677), Expect = 6e-69, Method: Composition-based stats.
Identities = 150/408 (36%), Positives = 225/408 (55%), Gaps = 32/408 (7%)
Query: 133 DKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRTIADADCSLCG 192
D+ + + D KCI C C+ C TGA T + + + A C CG
Sbjct: 23 DQAYIVQVDETKCIGCDTCMGYCP------------TGAITGESGEPHKVVDPAACINCG 70
Query: 193 QCITHCPVGALRERDD-TEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKI 251
QC+THCPV A+ E + + + + V+ APA+R A G+ G+ L + +
Sbjct: 71 QCLTHCPVAAIYETVSFVPEIEAKLKDKNVKVIAMPAPAVRYALGDPFGMPLGAVTTEHM 130
Query: 252 FDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCCPGWVRFIKSQY 311
LK++G D V+D F+AD+TI EE E + R +K K P FTSCCPGW ++ ++ Y
Sbjct: 131 LTGLKQLGFDNVWDNEFTADVTIWEEGSELLARITKKLDKPLPQFTSCCPGWQKYAETFY 190
Query: 312 PHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKK-----SEIDMEL 366
P L+ H SS KSP+ M G + K+Y A+++G +P+ I++V+IMPC AKK E+D
Sbjct: 191 PELLPHFSSCKSPIGMMGPLAKTYGAKELGYEPKQIYTVSIMPCTAKKFEGMRPEMDASG 250
Query: 367 FYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATGGVME 426
F D+D + TRE M+K A I + + D + +++G IFG +GGVME
Sbjct: 251 F------RDIDATINTRELAYMMKKAGIDLPKIANGKRDAVMGESTGGATIFGVSGGVME 304
Query: 427 AALRTAYYAIMGKNCPPDA--FKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLANTRR 484
AALR AY A+ K PP + FK VR +GI EA+ + ++++AV +G N +
Sbjct: 305 AALRFAYQALTKK--PPQSWDFKAVRGL----NGIKEATINIGGTDVKVAVVNGGKNFAK 358
Query: 485 LIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYF 532
+ D ++AG+ Y F+E MACPGGCV GGGQPI + ++ R + ++
Sbjct: 359 VCDEVKAGKSPYHFIEFMACPGGCVMGGGQPIMPTVLESMNRTTTKFY 406
>gi|1345094|gb|AAC47160.1| TvhydB protein
Length = 449
Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats.
Identities = 170/430 (39%), Positives = 236/430 (54%), Gaps = 32/430 (7%)
Query: 141 DSKKCIKCMRCIQVCDKI------QSLNIWELEGTGARTTINVSGSRTIADADCSLCGQC 194
D KCI C C++ C + +S+ I E + G T+ + +A+ +C CGQC
Sbjct: 25 DMHKCINCQACVRACKNVAGQSVLKSVKINEGKKKGVVQTVT---GKLLAETNCIGCGQC 81
Query: 195 ITHCPVGALRERDDTEKFWRAVANP-DKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFD 253
CP A+ E+D ++ N D+++V Q+APAIR I + S F
Sbjct: 82 TLVCPTQAIHEKDALKQMNNIFKNKGDRILVCQIAPAIR------INMRRPWCSSRNSFH 135
Query: 254 -----ALKRIGADYVFDTAFSADLTIMEEAYEFIERFS--KGELKDKPMFTSCCPGWVRF 306
+ +R+G DYVFDT F ADLTI+EEA E ++R + K L PMFTSCCP WV +
Sbjct: 136 RQSRYSPQRLGFDYVFDTNFGADLTIVEEATELLQRLNDPKAVL---PMFTSCCPAWVNY 192
Query: 307 IKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDMEL 366
++ YP + HLS+ +SP+ M AV+K+ F + IG P+ IFSV IMPC AKK E E
Sbjct: 193 VEKSYPQWMPHLSTCRSPIGMLSAVIKNVFPKHIGVDPKRIFSVGIMPCTAKKDEAAREQ 252
Query: 367 FYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATGGVME 426
+ H+ D +T+RE +M+K+A I + L +TE D + A+G G IF ATGGVME
Sbjct: 253 LMTKSGLHETDLDITSRELAKMIKAAKINFKELPDTELDSPYAMATGGGAIFCATGGVME 312
Query: 427 AALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLANTRRLI 486
AA+R+AY GK P F VR + E GI + + +++AV G+ N LI
Sbjct: 313 AAVRSAYKFATGKELAPIEFVQVRGA---EKGIKVGTVDINGREIKVAVAQGVKNAMSLI 369
Query: 487 DSIEAGE---KHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSKVRYSH 543
IE G+ K F E+MACPGGCVGGGG P ++ KR Y ID+ SK R
Sbjct: 370 KKIEEGQDDVKGVVFCEVMACPGGCVGGGGSPRAKTKAAMNKRLDATYRIDRASKYRTPQ 429
Query: 544 ENECIKALYN 553
+N ++ LYN
Sbjct: 430 DNTQLQDLYN 439
>gi|116748293|ref|YP_844980.1| hydrogenases, Fe-only [Syntrophobacter fumaroxidans MPOB]
gi|116697357|gb|ABK16545.1| hydrogenases, Fe-only [Syntrophobacter fumaroxidans MPOB]
Length = 417
Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats.
Identities = 154/404 (38%), Positives = 223/404 (55%), Gaps = 22/404 (5%)
Query: 118 IQDVLYEEQLEDQPWDKNFPLIR-DSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTIN 176
I+ V+Y+E+ ++ D +KC C C C TGA +
Sbjct: 4 IEKVMYQEKPPAAADPDTLLFVQVDPEKCQGCGECDNHCP------------TGAVQARD 51
Query: 177 VSGSR-TIADADCSLCGQCITHCPVGALRER-DDTEKFWRAVANPDKVVVVQVAPAIRTA 234
+G R ++ A C CGQC+ +CP GA+ E ++ + +P V V APA+R A
Sbjct: 52 PAGVRHVVSPAACINCGQCLVNCPHGAVYETVSYVDEITARLKDPATVAVSMPAPAVRYA 111
Query: 235 WGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGEL-KDK 293
GE G K+ ALK++G +V+D ++AD+TIMEE E ++R SK + K
Sbjct: 112 LGECFGYPTGAYVGGKMHAALKQLGFRFVWDNEYTADVTIMEEGTELLQRISKPDRHKPL 171
Query: 294 PMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIM 353
P FTSCCPGWV+F++ YP L+ HLS+ KSP+ M GA+ K+Y A++ + +++V+IM
Sbjct: 172 PQFTSCCPGWVKFMECYYPDLLPHLSTCKSPIGMLGALAKTYGAQETKTPRDRMYTVSIM 231
Query: 354 PCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASG 413
PC+AKK E + D+D +TTRE M+K A I ++L + PD + ++G
Sbjct: 232 PCIAKKFE-GLRPEMAASGCRDIDATITTRELAFMIKQAGIDFKSLPDMAPDPILGMSTG 290
Query: 414 AGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTL-KENNLR 472
A IF +GGVMEAALR AY + + P KVVR GI A + + ++
Sbjct: 291 AATIFATSGGVMEAALRLAYEVLSKQKLPSPDIKVVR----THEGINTADIKVPRFGTVK 346
Query: 473 IAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPI 516
+AV SGLAN +L D + AG+ Y F+EIM CPGGCV GGGQP+
Sbjct: 347 VAVASGLANAAKLCDEVRAGKSPYHFIEIMTCPGGCVNGGGQPM 390
>gi|24375408|ref|NP_719451.1| periplasmic Fe hydrogenase, large subunit [Shewanella oneidensis
MR-1]
gi|24350246|gb|AAN56895.1|AE015824_6 periplasmic Fe hydrogenase, large subunit [Shewanella oneidensis
MR-1]
Length = 410
Score = 261 bits (666), Expect = 1e-67, Method: Composition-based stats.
Identities = 158/404 (39%), Positives = 218/404 (53%), Gaps = 42/404 (10%)
Query: 141 DSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRTIADADCSLCGQCITHCPV 200
++ KC C C Q C ++N GA ++ +I + C CGQC+ +CP
Sbjct: 18 NASKCKGCDACKQFC-PTHAIN-------GASGAVH-----SIDEDKCLSCGQCLINCPF 64
Query: 201 GALRERDDT-EKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKRIG 259
A+ E E + +A+ + VV +APA+R A GE GL + K++ A+ + G
Sbjct: 65 SAIEETHSALETVIKKLADKNTTVVGIIAPAVRVAIGEEFGLGTGELVTGKLYGAMNQAG 124
Query: 260 ADYVFDTAFSADLTIMEEAYEFIERFS---KGELKDKPM--FTSCCPGWVRFIKSQYPHL 314
+FD F+ADLTIMEE EFI R KGE P+ FTSCCPGWVR+++++YP L
Sbjct: 125 FK-IFDCNFAADLTIMEEGSEFIHRLHANVKGEANAGPLPQFTSCCPGWVRYLETRYPAL 183
Query: 315 VSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAGH 374
+ +LS+AKSP QM G V K+Y A+ +PE+IF+V++MPC +KK E F + H
Sbjct: 184 LPNLSTAKSPQQMAGTVAKTYGAKVYQMQPENIFTVSVMPCTSKKLEASRPEFNSAWQYH 243
Query: 375 -----------DMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATGG 423
D+D VLTTRE ++LK I E + D LF + +GAG IFG TGG
Sbjct: 244 QEHGANSPSYQDIDAVLTTREMAQLLKLLDIDLANTAEYQGDSLFSEYTGAGTIFGTTGG 303
Query: 424 VMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLANTR 483
VMEAALRTA+ + G F+ VR G+ AS +L + L VT +A
Sbjct: 304 VMEAALRTAHKVLTGTEMAKLEFEPVRGL----KGVKSASVSLFDTELNQDVTVNVAVVH 359
Query: 484 RLIDSIE-------AGEKHYDFVEIMACPGGCVGGGGQPIHESG 520
+ ++IE AG Y F+E+M C GGCV GGGQPI G
Sbjct: 360 DMGNNIEPVLRDVMAGTSPYHFIEVMNCAGGCVNGGGQPIEGKG 403
>gi|113971582|ref|YP_735375.1| hydrogenases, Fe-only [Shewanella sp. MR-4]
gi|113886266|gb|ABI40318.1| hydrogenases, Fe-only [Shewanella sp. MR-4]
Length = 410
Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats.
Identities = 158/404 (39%), Positives = 218/404 (53%), Gaps = 42/404 (10%)
Query: 141 DSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRTIADADCSLCGQCITHCPV 200
++ KC C C Q C ++N GA ++ +I + C CGQC+ +CP
Sbjct: 18 NASKCKGCDACKQFC-PTHAIN-------GASGAVH-----SIDEDKCLSCGQCLINCPF 64
Query: 201 GALRERDDT-EKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKRIG 259
A+ E E + +A+ + VV +APA+R A GE GL + K++ A+ + G
Sbjct: 65 SAIEETHSALETVIKKLADKNTTVVGIIAPAVRVAIGEEFGLGTGELVTGKLYGAMNQAG 124
Query: 260 ADYVFDTAFSADLTIMEEAYEFIERF---SKGELKDK--PMFTSCCPGWVRFIKSQYPHL 314
+FD F+ADLTIMEE EFI R +KGE P FTSCCPGWVR+++++YP L
Sbjct: 125 FK-IFDCNFAADLTIMEEGSEFIHRLHANAKGEENAGALPQFTSCCPGWVRYLETRYPAL 183
Query: 315 VSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAGH 374
+ +LS+AKSP QM G V K+Y A+ +PE+IF+V++MPC +KK E F + H
Sbjct: 184 LPNLSTAKSPQQMAGTVAKTYGAKVYQMQPENIFTVSVMPCTSKKLEASRPEFNSAWQYH 243
Query: 375 -----------DMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATGG 423
D+D VLTTRE ++LK I E + D LF + +GAG IFG TGG
Sbjct: 244 QEHGANTPSYQDIDAVLTTREMAQLLKMLDIDLANTPEYQGDSLFSEYTGAGTIFGTTGG 303
Query: 424 VMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLANTR 483
VMEAALRTA+ + G F+ VR G+ AS +L + L VT +A
Sbjct: 304 VMEAALRTAHKVLTGTEMAKLEFEPVRGL----KGVKSASVSLFDTELNQNVTVNVAVVH 359
Query: 484 RLIDSIE-------AGEKHYDFVEIMACPGGCVGGGGQPIHESG 520
+ ++IE AG Y F+E+M C GGCV GGGQPI G
Sbjct: 360 DMGNNIEPVLRDVMAGTSPYHFIEVMNCAGGCVNGGGQPIEGKG 403
>gi|88660702|gb|ABD48098.1| periplasmic Fe-hydrogenase large subunit [Shewanella
decolorationis]
Length = 410
Score = 259 bits (662), Expect = 3e-67, Method: Composition-based stats.
Identities = 158/404 (39%), Positives = 217/404 (53%), Gaps = 42/404 (10%)
Query: 141 DSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRTIADADCSLCGQCITHCPV 200
++ KC C C Q C ++N +GA + +I + C CGQC+ +CP
Sbjct: 18 NASKCKGCDACKQFC-PTHAIN----GASGA--------AHSIDEDKCLSCGQCLINCPF 64
Query: 201 GALRERDDT-EKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKRIG 259
A+ E E + +A+ + VV +APA+R A GE GL + K++ A+ + G
Sbjct: 65 SAIEETHSALETVIKKLADKNTTVVGIIAPAVRVAIGEEFGLGTGELVTGKLYGAMNQAG 124
Query: 260 ADYVFDTAFSADLTIMEEAYEFIERFS---KGELKDK--PMFTSCCPGWVRFIKSQYPHL 314
+FD F+ADLTIMEE EFI R KGE P FTSCCPGWVR+++++YP L
Sbjct: 125 FK-IFDCNFAADLTIMEEGSEFIHRLHANVKGEENAGALPQFTSCCPGWVRYLETRYPAL 183
Query: 315 VSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAGH 374
+ +LS+AKSP QM G V K+Y A+ +PE+IF+V++MPC +KK E F + H
Sbjct: 184 LPNLSTAKSPQQMAGTVAKTYGAKVYQMQPENIFTVSVMPCTSKKLEASRPEFNSAWQYH 243
Query: 375 -----------DMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATGG 423
D+D VLTTRE ++LK I E + D LF + +GAG IFG TGG
Sbjct: 244 QEHGANAPSYQDIDAVLTTREMAQLLKMLDIDLANTPEYQGDSLFSEYTGAGTIFGTTGG 303
Query: 424 VMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLANTR 483
VMEAALRTA+ + G F+ VR G+ AS +L + L VT +A
Sbjct: 304 VMEAALRTAHKVLTGTEMAKLEFEPVRGL----KGVKSASVSLFDTQLNQNVTVNVAVVH 359
Query: 484 RLIDSIE-------AGEKHYDFVEIMACPGGCVGGGGQPIHESG 520
+ ++IE AG Y F+E+M C GGCV GGGQPI G
Sbjct: 360 DMGNNIEPVLRDVMAGTSPYHFIEVMNCAGGCVNGGGQPIEGKG 403
>gi|117919163|ref|YP_868355.1| response regulator receiver protein [Shewanella sp. ANA-3]
gi|117611495|gb|ABK46949.1| response regulator receiver protein [Shewanella sp. ANA-3]
Length = 410
Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats.
Identities = 157/405 (38%), Positives = 212/405 (52%), Gaps = 44/405 (10%)
Query: 141 DSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRTIADAD-CSLCGQCITHCP 199
++ KC C C Q C SG+ D D C CGQC+ +CP
Sbjct: 18 NASKCKGCDACKQFCP--------------THAIHGASGAVHSIDEDKCLSCGQCLINCP 63
Query: 200 VGALRERDDT-EKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKRI 258
A+ E E + +A+ + VV +APA+R A GE GL + K++ A+ +
Sbjct: 64 FSAIEETHSALETVIKKLADKNTTVVGIIAPAVRVAIGEEFGLGTGELVTGKLYGAMNQA 123
Query: 259 GADYVFDTAFSADLTIMEEAYEFIERFS---KGELKDK--PMFTSCCPGWVRFIKSQYPH 313
G +FD F+ADLTIMEE EFI R KGE P FTSCCPGWVR+++++YP
Sbjct: 124 GFK-IFDCNFAADLTIMEEGSEFIHRLHANVKGEENAGALPQFTSCCPGWVRYLETRYPA 182
Query: 314 LVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAG 373
L+ +LS+AKSP QM G V K+Y A+ +PE+IF+V++MPC +KK E F +
Sbjct: 183 LLPNLSTAKSPQQMAGTVAKTYGAKVYQMQPENIFTVSVMPCTSKKLEASRPEFNSAWQY 242
Query: 374 H-----------DMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATG 422
H D+D VLTTRE ++LK I E + D +F + +GAG IFG TG
Sbjct: 243 HQEQGANTPSYQDIDAVLTTREMAQLLKMLDIDLANTPEYQGDSMFSEYTGAGTIFGTTG 302
Query: 423 GVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLANT 482
GVMEAALRTA+ + G F+ VR G+ AS +L + L VT +A
Sbjct: 303 GVMEAALRTAHKVLTGTEMAKLEFEPVRGL----KGVKSASVSLFDTQLNQNVTVNVAVV 358
Query: 483 RRLIDSIE-------AGEKHYDFVEIMACPGGCVGGGGQPIHESG 520
+ ++IE AG Y F+E+M C GGCV GGGQPI G
Sbjct: 359 HDMGNNIEPVLRDVMAGTSPYHFIEVMNCAGGCVNGGGQPIEGKG 403
>gi|83282978|gb|ABC01050.1| Fe-hydrogenase [uncultured bacterium]
Length = 221
Score = 245 bits (626), Expect = 5e-63, Method: Composition-based stats.
Identities = 125/225 (55%), Positives = 155/225 (68%), Gaps = 4/225 (1%)
Query: 277 EAYEFIERFSKGELKDKPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYF 336
EA EFI + E + PMFTSCCPGWVRF+KSQYP +V LS+AKSP QMFGA+ KSY+
Sbjct: 1 EASEFIAKLKNKENETFPMFTSCCPGWVRFLKSQYPDMVDQLSTAKSPQQMFGAISKSYY 60
Query: 337 AEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILP 396
A+ + +PE+I S++IMPC+AKK E + AG D+D VLTTRE RM+ + HI P
Sbjct: 61 AKLLHVEPENICSISIMPCLAKKQECTLPTMDSAGAGPDVDIVLTTREIERMILAEHIHP 120
Query: 397 ETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEE 456
E L E E D SGAG+IFGATGGVMEAALRTAY+ + G+N PDAF+ VR
Sbjct: 121 EELAEEEFDMPLGVGSGAGVIFGATGGVMEAALRTAYHLVAGENPDPDAFRNVRGM---- 176
Query: 457 SGIIEASFTLKENNLRIAVTSGLANTRRLIDSIEAGEKHYDFVEI 501
G EA+F + LR+AV SGL NTRRL++++ GE YDFVEI
Sbjct: 177 DGWKEATFDIAGVPLRVAVASGLGNTRRLVEALREGEVTYDFVEI 221
>gi|77921079|gb|ABB05318.1| Fe-hydrogenase [uncultured bacterium]
gi|77921091|gb|ABB05324.1| Fe-hydrogenase [uncultured bacterium]
gi|83282958|gb|ABC01040.1| Fe-hydrogenase [uncultured bacterium]
gi|83282994|gb|ABC01058.1| Fe-hydrogenase [uncultured bacterium]
Length = 221
Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats.
Identities = 124/225 (55%), Positives = 155/225 (68%), Gaps = 4/225 (1%)
Query: 277 EAYEFIERFSKGELKDKPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYF 336
EA EFI + E + PMFTSCCPGWVRF+KSQYP +V LS+AKSP QMFGA+ KSY+
Sbjct: 1 EASEFIAKLKNKENETFPMFTSCCPGWVRFLKSQYPDMVDQLSTAKSPQQMFGAISKSYY 60
Query: 337 AEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILP 396
A+ + +PE+I S++IMPC+AKK E + AG D+D VLTTRE RM+ + HI P
Sbjct: 61 AKLLQVEPENICSISIMPCLAKKQECTLPTMDSAGAGPDVDIVLTTREIERMILAEHIHP 120
Query: 397 ETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEE 456
E L E E D SGAG+IFGATGGVMEAALRTAY+ + G+N PDAF+ VR
Sbjct: 121 EELAEEEFDMPLGVGSGAGVIFGATGGVMEAALRTAYHLVAGENPDPDAFRNVRGM---- 176
Query: 457 SGIIEASFTLKENNLRIAVTSGLANTRRLIDSIEAGEKHYDFVEI 501
G EA+F + LR+AV SGL NTR+L++++ GE YDFVEI
Sbjct: 177 DGWKEATFDIAGVPLRVAVASGLGNTRQLVEALRKGEVAYDFVEI 221
>gi|77921081|gb|ABB05319.1| Fe-hydrogenase [uncultured bacterium]
Length = 221
Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats.
Identities = 125/225 (55%), Positives = 154/225 (68%), Gaps = 4/225 (1%)
Query: 277 EAYEFIERFSKGELKDKPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYF 336
EA EFI + E + PMFTSCCPGWVRF+KSQYP +V LS+AKSP QMFGA+ KSY+
Sbjct: 1 EASEFIAKLKNKENETFPMFTSCCPGWVRFLKSQYPDMVDQLSTAKSPQQMFGAISKSYY 60
Query: 337 AEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILP 396
A+ + +PE+I S++IMPC+AKK E + AG D+D VLTTRE RM+ + HI P
Sbjct: 61 AKLLHVEPENICSISIMPCLAKKQECTLPTMDSAGAGPDVDIVLTTREIERMILAEHIHP 120
Query: 397 ETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEE 456
E L E E D SGAG IFGATGGVMEAALRTAY+ + G+N PDAF+ VR
Sbjct: 121 EELAEEEFDMPLGVGSGAGAIFGATGGVMEAALRTAYHLVAGENPDPDAFRNVRGM---- 176
Query: 457 SGIIEASFTLKENNLRIAVTSGLANTRRLIDSIEAGEKHYDFVEI 501
G EA+F + LR+AV SGL NTRRL++++ GE YDFVEI
Sbjct: 177 DGWKEATFDIAGVPLRVAVASGLGNTRRLVEALREGEVTYDFVEI 221
>gi|130071|sp|P13629|PHFL_DESVO Periplasmic [Fe] hydrogenase large subunit (Fe hydrogenlyase)
gi|145099|gb|AAA23373.1| [Fe]-hydrogenase alpha subunit
Length = 421
Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats.
Identities = 156/421 (37%), Positives = 228/421 (54%), Gaps = 23/421 (5%)
Query: 116 LNIQDVLYEEQLEDQPWD--KNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGART 173
+ ++ + YE+ D D K F + D KCI C C Q C TGA
Sbjct: 4 IEMEKIFYEDHAPDPKADPDKLFFIQIDESKCIGCDSCQQYCP------------TGAIF 51
Query: 174 TINVSGSRTIADADCSLCGQCITHCPVGALRERDD-TEKFWRAVANPDKVVVVQVAPAIR 232
+ + C CGQC+THCPVGA+ E + + + D V+ APA+R
Sbjct: 52 GDTGDAHKIPHEELCINCGQCLTHCPVGAIYESQSWVTEIEKKIKAKDVKVIAMPAPAVR 111
Query: 233 TAWGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKD 292
A G+ GL + + K+F ALK +G D+ +D F+AD+TI EE EF++R +K K
Sbjct: 112 YALGDAFGLPVGTVTTGKMFSALKELGFDHCWDNEFTADVTIWEEGTEFVQRLTKKLDKP 171
Query: 293 KPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAI 352
P FTSCCPGW ++++S YP L H+SS KSP+ M G + K+Y A+++ +++V+I
Sbjct: 172 LPQFTSCCPGWHKYVESLYPELFPHMSSCKSPIGMLGTLAKTYGADRMKYDRAKVYTVSI 231
Query: 353 MPCVAKKSEIDMELFYGEYAGH-DMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDA 411
MPC AKK E + +GH D+D + TRE M+K A I L + + D L ++
Sbjct: 232 MPCTAKKYEGMRPQLWD--SGHKDIDATIDTRELAYMIKKAKIDFTKLPDGKRDTLMGES 289
Query: 412 SGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNL 471
+G +FG TGGVMEAALR AY A+ GK FK VR G+ EA+ + ++
Sbjct: 290 TGGATLFGVTGGVMEAALRYAYQAVTGKKPESMDFKGVRGL----QGVKEATVNVGGVDV 345
Query: 472 RIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPIHESG-ELAVKRGSNL 530
++AV G + + ++AG+ + F+E MACPGGCV GGGQP+ E A +R + +
Sbjct: 346 KVAVVHGARRFHDVCELVKAGKAPWHFIEFMACPGGCVCGGGQPVMPGVLEAADRRSTRM 405
Query: 531 Y 531
Y
Sbjct: 406 Y 406
>gi|77921087|gb|ABB05322.1| Fe-hydrogenase [uncultured bacterium]
Length = 221
Score = 238 bits (607), Expect = 8e-61, Method: Composition-based stats.
Identities = 122/225 (54%), Positives = 153/225 (68%), Gaps = 4/225 (1%)
Query: 277 EAYEFIERFSKGELKDKPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYF 336
EA EFI + E + PMFT CCPGWVRF+KSQYP +V LS+AKS QMFGA+ KSY+
Sbjct: 1 EASEFIAKLKNKENETFPMFTLCCPGWVRFLKSQYPDMVDQLSTAKSSQQMFGAISKSYY 60
Query: 337 AEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILP 396
A+ + +PE+I S++IMPC+AKK E + AG D+D VLTTRE RM+ + HI P
Sbjct: 61 AKLLQVEPENICSISIMPCLAKKQECTLPTMDSAGAGPDVDIVLTTREIERMILAEHIHP 120
Query: 397 ETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEE 456
E L E E D SGAG+IFGATGGVMEAALRTAY+ + G+N PDAF+ VR
Sbjct: 121 EELAEEEFDMPLGVGSGAGVIFGATGGVMEAALRTAYHLVAGENPDPDAFRNVRGM---- 176
Query: 457 SGIIEASFTLKENNLRIAVTSGLANTRRLIDSIEAGEKHYDFVEI 501
G EA+F + LR+AV SGL NTR+L++++ GE YDFVEI
Sbjct: 177 DGWKEATFDIAGVPLRVAVASGLGNTRQLVEALRKGEVAYDFVEI 221
>gi|77921083|gb|ABB05320.1| Fe-hydrogenase [uncultured bacterium]
gi|77921105|gb|ABB05331.1| Fe-hydrogenase [uncultured bacterium]
gi|83282960|gb|ABC01041.1| Fe-hydrogenase [uncultured bacterium]
Length = 221
Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats.
Identities = 118/225 (52%), Positives = 150/225 (66%), Gaps = 4/225 (1%)
Query: 277 EAYEFIERFSKGELKDKPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYF 336
E EF+ + E + PMFTSCCPGWVRF+KSQYP +V LS+AKSP QMFGAV KSY+
Sbjct: 1 EGSEFLAKLQNREKETFPMFTSCCPGWVRFLKSQYPDMVRQLSTAKSPQQMFGAVTKSYY 60
Query: 337 AEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILP 396
A +G +PE I S+++MPC+AKK E + AG D+D VLTTRE RM+++ I P
Sbjct: 61 ARLLGVEPERICSISVMPCLAKKQEAALPTMDAAGAGPDVDIVLTTREIDRMIRAEDIHP 120
Query: 397 ETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEE 456
L E E D+ SGAG+IFGATGGVMEAALR+AYY G N PDAF+ VR
Sbjct: 121 AELPEEEFDRPLGVGSGAGVIFGATGGVMEAALRSAYYLATGSNPDPDAFRDVRGM---- 176
Query: 457 SGIIEASFTLKENNLRIAVTSGLANTRRLIDSIEAGEKHYDFVEI 501
G EA+ ++ +R+AV SGL N R+L+D++ G+ YDFVEI
Sbjct: 177 DGWKEATIDIRGIAVRVAVASGLGNARKLVDALRKGDARYDFVEI 221
>gi|123471484|ref|XP_001318941.1| TvhydB protein, putative [Trichomonas vaginalis G3]
gi|121901713|gb|EAY06718.1| TvhydB protein, putative [Trichomonas vaginalis G3]
Length = 404
Score = 236 bits (601), Expect = 5e-60, Method: Composition-based stats.
Identities = 143/333 (42%), Positives = 194/333 (58%), Gaps = 13/333 (3%)
Query: 247 SVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFS--KGELKDKPMFTSCCPGWV 304
S K+ ALKR+G DYVFDT FSADLTI+EEA E ++R + K L PMFTSCCP WV
Sbjct: 69 STGKLVTALKRLGFDYVFDTNFSADLTIVEEATELLQRLNDPKAVL---PMFTSCCPAWV 125
Query: 305 RFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDM 364
+++ YP + HLS+ +SP+ M +K+ F + IG P I+SV IMPC AKK E +
Sbjct: 126 NYVEKSYPQWMPHLSTCRSPIGMLSGAIKNVFPKHIGVDPARIYSVGIMPCTAKKDEAER 185
Query: 365 ELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATGGV 424
E + H+ D +T+RE +M+K+A I + L +TE D + A+G G IF ATGGV
Sbjct: 186 EQLRTKQGYHETDLDITSRELAKMIKAAKINFKELPDTEFDSPYAMATGGGAIFCATGGV 245
Query: 425 MEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLANTRR 484
ME+A+R+AY G++ P F VR + E GI + + +++AV G+ N
Sbjct: 246 MESAVRSAYKFATGQDLAPIEFVQVRGA---EKGIKVGTVNINGRKIKVAVAQGVKNAMD 302
Query: 485 LIDSIEAGE---KHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSKVRY 541
LI IE G+ K F E+MACPGGCVGGGG P ++ KR Y ID+ SK R
Sbjct: 303 LIKKIEQGQDDVKGVVFCEVMACPGGCVGGGGSPRAKTKAAMNKRLDATYRIDRASKYRT 362
Query: 542 SHENECIKALYNDFFEKPNSH-KAHSLLHTDHF 573
+N ++ LYN + H AH + HT HF
Sbjct: 363 PQDNTQLQELYNTYLGGKFGHGMAHEIFHT-HF 394
>gi|78355128|ref|YP_386577.1| Ferredoxin hydrogenase [Desulfovibrio desulfuricans G20]
gi|78217533|gb|ABB36882.1| Ferredoxin hydrogenase [Desulfovibrio desulfuricans G20]
Length = 421
Score = 235 bits (599), Expect = 7e-60, Method: Composition-based stats.
Identities = 155/412 (37%), Positives = 226/412 (54%), Gaps = 32/412 (7%)
Query: 114 NDLNIQDVLYEEQLED---QPWDKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTG 170
N + ++ + Y +Q D P D+ F + D +KCI C C + C TG
Sbjct: 2 NLVEMEKIQYVDQSPDPRANP-DELFFIQIDPEKCIGCDTCQEYCP------------TG 48
Query: 171 ARTTINVSGSRTIADADCSLCGQCITHCPVGALRE-----RDDTEKFWRAVANPDKVVVV 225
A S + C CGQC+THCPVGA+ E R+ +EK + +P+ V+
Sbjct: 49 AIFGDTGSAHSIPHEEICINCGQCLTHCPVGAIYEVQSWVRELSEK----IKDPEIKVIA 104
Query: 226 QVAPAIRTAWGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERF 285
APA+R GE G+ + + K+ AL+ +G D+V+D F+AD+TI EE EF++R
Sbjct: 105 MPAPAVRYGLGECFGMPVGTVTTGKMLTALQMLGFDHVWDNEFTADVTIWEEGTEFVKRL 164
Query: 286 SKGELKDKPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPE 345
+ K P FTSCCPGW ++++S YP L HLSS KSP+ M GA+ K+Y + +
Sbjct: 165 TGQIDKPLPQFTSCCPGWHKYVESFYPELFPHLSSCKSPIGMMGALAKTYGPDVMKYDRS 224
Query: 346 DIFSVAIMPCVAKKSE-IDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEP 404
+++V+IMPC AKK E + +L+ Y D+D + TRE M+K A I L + +
Sbjct: 225 KVYTVSIMPCTAKKYEGMRADLWSSGY--KDIDATIDTRELAYMIKKAGIDFAALPDGKR 282
Query: 405 DKLFHDASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASF 464
D L D++G IFG +GGVMEAALR AY A+ GK F +VR +GI E +
Sbjct: 283 DTLMGDSTGGATIFGVSGGVMEAALRYAYEAVTGKKPSSWDFTMVRGL----NGIKEGTV 338
Query: 465 TLKENNLRIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPI 516
T+ + + +AV G + + I+ G+ + F+E MACPGGCV GGGQP+
Sbjct: 339 TIGDAKINVAVVHGAKRFAEVCEVIKTGKSPWHFIEFMACPGGCVCGGGQPV 390
>gi|83282984|gb|ABC01053.1| Fe-hydrogenase [uncultured bacterium]
Length = 221
Score = 235 bits (599), Expect = 7e-60, Method: Composition-based stats.
Identities = 110/225 (48%), Positives = 151/225 (67%), Gaps = 4/225 (1%)
Query: 277 EAYEFIERFSKGELKDKPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYF 336
E E +E+ E + PMFTSCCPGWVRF+KSQYP +V HLS AKSP QMFGAV KSY+
Sbjct: 1 EGSELLEKLKNKETEKFPMFTSCCPGWVRFLKSQYPDMVDHLSGAKSPQQMFGAVAKSYY 60
Query: 337 AEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILP 396
A+ + P I+S+++MPC+AK+ E E+ AG D+D VLTTRE RM+++ HIL
Sbjct: 61 AKLLNVDPSRIYSISVMPCIAKRDECAQEVLNDAGAGQDVDLVLTTREIDRMIRAEHILV 120
Query: 397 ETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEE 456
L+E + D +GA +IFG TGGVM+AALR+A+Y + GKN P+AF+ +
Sbjct: 121 SELEEEDFDAPLGTGTGAAVIFGTTGGVMQAALRSAFYLVTGKNPDPEAFQGIGGM---- 176
Query: 457 SGIIEASFTLKENNLRIAVTSGLANTRRLIDSIEAGEKHYDFVEI 501
G EA+F + + L +AV +GL N RRL+++I +G+ YDFVE+
Sbjct: 177 EGWKEANFQIADTTLHVAVVNGLGNARRLMEAIRSGKASYDFVEV 221
>gi|13022069|gb|AAK11625.1|AF331719_1 [Fe] hydrogenase large subunit [Desulfovibrio desulfuricans]
Length = 421
Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats.
Identities = 155/412 (37%), Positives = 225/412 (54%), Gaps = 32/412 (7%)
Query: 114 NDLNIQDVLYEEQLED---QPWDKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTG 170
N + ++ + Y +Q D P D+ F + D +KCI C C + C TG
Sbjct: 2 NLVEMEKIQYVDQSPDPRANP-DELFFIQIDPEKCIGCDTCQEYCP------------TG 48
Query: 171 ARTTINVSGSRTIADADCSLCGQCITHCPVGALRE-----RDDTEKFWRAVANPDKVVVV 225
A S + C CGQC+THCPVGA+ E R+ +EK + +P+ V+
Sbjct: 49 AIFGDTGSAHSIPHEEICINCGQCLTHCPVGAIYEVQSWVRELSEK----IKDPEIKVIA 104
Query: 226 QVAPAIRTAWGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERF 285
APA+R GE G+ + + K+ AL+ +G D+V+D F+AD+TI EE EF+ R
Sbjct: 105 MPAPAVRYGLGECFGMPVGTVTTGKMLTALQMLGFDHVWDNEFTADVTIWEEGTEFVNRL 164
Query: 286 SKGELKDKPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPE 345
+ K P FTSCCPGW ++++S YP L HLSS KSP+ M GA+ K+Y + +
Sbjct: 165 TGQIDKPLPQFTSCCPGWHKYVESFYPELFPHLSSCKSPIGMMGALAKTYGPDVMKYDRS 224
Query: 346 DIFSVAIMPCVAKKSE-IDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEP 404
+++V+IMPC AKK E + +L+ Y D+D + TRE M+K A I L + +
Sbjct: 225 KVYTVSIMPCTAKKYEGMRADLWSSGY--KDIDATIDTRELAYMIKKAGIDFAALPDGKR 282
Query: 405 DKLFHDASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEESGIIEASF 464
D L D++G IFG +GGVMEAALR AY A+ GK F +VR +GI E +
Sbjct: 283 DTLMGDSTGGATIFGVSGGVMEAALRYAYEAVTGKKPSSWDFTMVRGL----NGIKEGTV 338
Query: 465 TLKENNLRIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQPI 516
T+ + + +AV G + + I+ G+ + F+E MACPGGCV GGGQP+
Sbjct: 339 TIGDAKINVAVVHGAKRFAEVCEVIKTGKSPWHFIEFMACPGGCVCGGGQPV 390
>gi|40890031|pdb|1E08|A Chain A, Structural Model Of The [fe]-HydrogenaseCYTOCHROME C553
Complex Combining Nmr And Soft-Docking
gi|40890034|pdb|1GX7|A Chain A, Best Model Of The Electron Transfer Complex Between
Cytochrome C3 And [fe]-Hydrogenase
Length = 371
Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats.
Identities = 147/381 (38%), Positives = 213/381 (55%), Gaps = 26/381 (6%)
Query: 141 DSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRTIADAD-CSLCGQCITHCP 199
D KCI C C Q C A + +I + C CGQC+THCP
Sbjct: 5 DEAKCIGCDTCSQYCPT-------------AAIFGEMGEPHSIPHIEACINCGQCLTHCP 51
Query: 200 VGALRERDD-TEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKRI 258
A+ E + + + + + APA+R A G+ G+ + + K+ AL+++
Sbjct: 52 ENAIYEAQSWVPEVEKKLKDGKVKCIAMPAPAVRYALGDAFGMPVGSVTTGKMLAALQKL 111
Query: 259 GADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCCPGWVRFIKSQYPHLVSHL 318
G + +DT F+AD+TI EE EF+ER +K P FTSCCPGW ++ ++ YP L+ H
Sbjct: 112 GFAHCWDTEFTADVTIWEEGSEFVERLTKKSDMPLPQFTSCCPGWQKYAETYYPELLPHF 171
Query: 319 SSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSE-IDMELFYGEYAGHDMD 377
S+ KSP+ M GA+ K+Y AE++ P+ +++V+IMPC+AKK E + EL D+D
Sbjct: 172 STCKSPIGMNGALAKTYGAERMKYDPKQVYTVSIMPCIAKKYEGLRPEL--KSSGMRDID 229
Query: 378 CVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYAIM 437
LTTRE M+K A I L + + D L +++G IFG TGGVMEAALR AY A+
Sbjct: 230 ATLTTRELAYMIKKAGIDFAKLPDGKRDSLMGESTGGATIFGVTGGVMEAALRFAYEAVT 289
Query: 438 GKNCPPDA--FKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLANTRRLIDSIEAGEKH 495
GK PD+ FK VR GI EA+ + ++++AV G +++ D ++AG+
Sbjct: 290 GKK--PDSWDFKAVRGL----DGIKEATVNVGGTDVKVAVVHGAKRFKQVCDDVKAGKSP 343
Query: 496 YDFVEIMACPGGCVGGGGQPI 516
Y F+E MACPGGCV GGGQP+
Sbjct: 344 YHFIEYMACPGGCVCGGGQPV 364
>gi|46580179|ref|YP_010987.1| periplasmic [Fe] hydrogenase, large subunit [Desulfovibrio vulgaris
subsp. vulgaris str. Hildenborough]
gi|120602431|ref|YP_966831.1| hydrogenases, Fe-only [Desulfovibrio vulgaris subsp. vulgaris DP4]
gi|130070|sp|P07598|PHFL_DESVH Periplasmic [Fe] hydrogenase large subunit (Fe hydrogenlyase)
gi|4930042|pdb|1HFE|L Chain L, 1.6 A Resolution Structure Of The Fe-Only Hydrogenase From
Desulfovibrio Desulfuricans
gi|4930044|pdb|1HFE|M Chain M, 1.6 A Resolution Structure Of The Fe-Only Hydrogenase From
Desulfovibrio Desulfuricans
gi|40830|emb|CAA26266.1| unnamed protein product [Desulfovibrio vulgaris]
gi|46449596|gb|AAS96246.1| periplasmic [Fe] hydrogenase, large subunit [Desulfovibrio vulgaris
subsp. vulgaris str. Hildenborough]
gi|120562660|gb|ABM28404.1| hydrogenases, Fe-only [Desulfovibrio vulgaris subsp. vulgaris DP4]
Length = 421
Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats.
Identities = 147/381 (38%), Positives = 213/381 (55%), Gaps = 26/381 (6%)
Query: 141 DSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINVSGSRTIADAD-CSLCGQCITHCP 199
D KCI C C Q C A + +I + C CGQC+THCP
Sbjct: 31 DEAKCIGCDTCSQYCPT-------------AAIFGEMGEPHSIPHIEACINCGQCLTHCP 77
Query: 200 VGALRERDD-TEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKRI 258
A+ E + + + + + APA+R A G+ G+ + + K+ AL+++
Sbjct: 78 ENAIYEAQSWVPEVEKKLKDGKVKCIAMPAPAVRYALGDAFGMPVGSVTTGKMLAALQKL 137
Query: 259 GADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMFTSCCPGWVRFIKSQYPHLVSHL 318
G + +DT F+AD+TI EE EF+ER +K P FTSCCPGW ++ ++ YP L+ H
Sbjct: 138 GFAHCWDTEFTADVTIWEEGSEFVERLTKKSDMPLPQFTSCCPGWQKYAETYYPELLPHF 197
Query: 319 SSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSE-IDMELFYGEYAGHDMD 377
S+ KSP+ M GA+ K+Y AE++ P+ +++V+IMPC+AKK E + EL D+D
Sbjct: 198 STCKSPIGMNGALAKTYGAERMKYDPKQVYTVSIMPCIAKKYEGLRPEL--KSSGMRDID 255
Query: 378 CVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYAIM 437
LTTRE M+K A I L + + D L +++G IFG TGGVMEAALR AY A+
Sbjct: 256 ATLTTRELAYMIKKAGIDFAKLPDGKRDSLMGESTGGATIFGVTGGVMEAALRFAYEAVT 315
Query: 438 GKNCPPDA--FKVVRHSSQEESGIIEASFTLKENNLRIAVTSGLANTRRLIDSIEAGEKH 495
GK PD+ FK VR GI EA+ + ++++AV G +++ D ++AG+
Sbjct: 316 GKK--PDSWDFKAVRGL----DGIKEATVNVGGTDVKVAVVHGAKRFKQVCDDVKAGKSP 369
Query: 496 YDFVEIMACPGGCVGGGGQPI 516
Y F+E MACPGGCV GGGQP+
Sbjct: 370 YHFIEYMACPGGCVCGGGQPV 390
>gi|83282982|gb|ABC01052.1| Fe-hydrogenase [uncultured bacterium]
Length = 221
Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats.
Identities = 114/225 (50%), Positives = 148/225 (65%), Gaps = 4/225 (1%)
Query: 277 EAYEFIERFSKGELKDKPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYF 336
E E +ER + K PMFTSCCPGWVR+ K+ + V LS++KSP QMFGA+ KSY+
Sbjct: 1 EGSELLERLKEPAGKKSPMFTSCCPGWVRYCKAHHSGFVDQLSTSKSPGQMFGAIAKSYY 60
Query: 337 AEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILP 396
AE +G P I+ V IMPC+AKKSE+ + + D+D LTTRE VRM+++AHI
Sbjct: 61 AELLGVDPHRIYCVEIMPCLAKKSEVGISVMNSACGDPDVDVSLTTREVVRMIRAAHIDV 120
Query: 397 ETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEE 456
L++ D+ A+GAG+IFGATGGVMEAALR+AY+ + G NC DAFK VR
Sbjct: 121 NALEDEPFDQPLGTATGAGVIFGATGGVMEAALRSAYFLVTGTNCDADAFKAVRGL---- 176
Query: 457 SGIIEASFTLKENNLRIAVTSGLANTRRLIDSIEAGEKHYDFVEI 501
+G EA+F L L +AV SGL N RL+ ++EAGE YDFVE+
Sbjct: 177 NGWKEATFDLAGTPLHVAVASGLGNASRLLTALEAGEVAYDFVEV 221
>gi|154414924|ref|XP_001580488.1| Iron only hydrogenase large subunit, C-terminal domain containing
protein [Trichomonas vaginalis G3]
gi|121914706|gb|EAY19502.1| Iron only hydrogenase large subunit, C-terminal domain containing
protein [Trichomonas vaginalis G3]
Length = 1103
Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats.
Identities = 165/583 (28%), Positives = 274/583 (46%), Gaps = 66/583 (11%)
Query: 1 MVNLTIDNIKISAKENMTIMEAAESAGIPIPKLCFLKGINEIAACRVCVVELEGKEKLIT 60
M+ ++ ++ + T+M+AAES GI IPKLC I CR+CVV+ G +
Sbjct: 1 MICAKVNGTEVCLPKGSTVMDAAESLGIYIPKLCAHPDIPPQGKCRLCVVKTAGNNYTL- 59
Query: 61 ACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLNIQD 120
AC+ + M + TN+P D ++ LSQ + + +L L ++ +
Sbjct: 60 ACSTKLVNNMEITTNTP----DVKKKALDALSQFN----------DMSLMPLTPEI---E 102
Query: 121 VLYEEQLEDQPW-----DKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTI 175
+Y+ +P +K L D C+ C RC++ C IQ + + E
Sbjct: 103 EIYKYLTNKKPTRGRKAEKTHALSFDPSLCVNCGRCVRACSDIQCIGALDEE-------- 154
Query: 176 NVSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAW 235
S ++ D DC CG C T CP AL + +A+++ K +++Q++P ++
Sbjct: 155 ----SHSLNDNDCIQCGMCTTVCPTDALIHNSSVPQLIKAISS-GKTMILQISPFVKINS 209
Query: 236 GEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPM 295
H SV KI A + +G YVFD F D++I+E+A E ++R K E PM
Sbjct: 210 DTHSKYLTNQVSVEKIIGAARIMGFRYVFDQKFGTDVSIIEDATELMQRLEKRE--KLPM 267
Query: 296 FTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPC 355
TS CP WV FI+ +P L +LS+ SP + G+++K+ F+ P +F V+++PC
Sbjct: 268 ITSSCPSWVNFIEKIFPDLTENLSTTMSPHIITGSLIKNCFSNLKNIDPMKVFVVSLLPC 327
Query: 356 VAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAG 415
A K EI E G +D V+T EF+ ++ + I + + +++ D + D S
Sbjct: 328 TAAKDEIKRESLNGM-----VDAVITANEFLELMNTFDIKFDDVMDSKFDNILADNSATP 382
Query: 416 IIFGATGGVMEAALRTAYYAIMGKNCPPDA------FKVVRHSSQEESGIIEASFTLKEN 469
+ + E L + + FK++R S S T+
Sbjct: 383 LDSKICQNITEPTLCYLHQKYNNEELNNFNFEHLHDFKMIRTS----------SVTIGNR 432
Query: 470 NLRIAVTSGLANTRRLIDSIEAGEKH-YDFVEIMACPGGCVGGGGQPIHESGELAVKRGS 528
+R AV + +A+ R D IE+G+ H YD++E++ACPGGC GGGQP ++ +
Sbjct: 433 TVRAAVCNSIADAR---DFIESGKFHEYDYIEVLACPGGCFYGGGQPKMSRKTAEIQETN 489
Query: 529 NLYFIDKNSKVRYSHEN-ECIKALYNDFFEKPNSHKAHSLLHT 570
L I+K ++ ++ + IK +YN F ++LLHT
Sbjct: 490 AL--IEKELPYQFPQKHMDDIKLIYNKLFSASVGDSNNNLLHT 530
>gi|19547861|gb|AAK26192.1| iron hydrogenase HDGL2 [Trichomonas vaginalis]
Length = 369
Score = 225 bits (574), Expect = 5e-57, Method: Composition-based stats.
Identities = 130/369 (35%), Positives = 197/369 (53%), Gaps = 10/369 (2%)
Query: 58 LITACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLN 117
L AC +V +G+ + T S VR ++ +L HD C+ C+ + C + D+N
Sbjct: 6 LSPACVTTVWDGLKIDTKSKNVRDSVENNLKELLDCHDETCSACIANHRCQFR----DMN 61
Query: 118 IQDVLYEEQLE---DQPWDKNFPLIR-DSKKCIKCMRCIQVCDKIQSLNIWELEGTGART 173
+ + E E ++ D++ IR D+ KC+ C RCI+ C+++ + +
Sbjct: 62 VAYSVKAETKEICSEEGIDESTNAIRLDTSKCVLCGRCIRACEEVAGTSAIIFGNRAKKM 121
Query: 174 TINVSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANP-DKVVVVQVAPAIR 232
I + T+ + C CGQC +CPVGA+ E+ ++ +AN K+ VVQVAPA+R
Sbjct: 122 RIQPTFGVTLQETSCIKCGQCTLYCPVGAITEKSQVKEALDILANKGKKITVVQVAPAVR 181
Query: 233 TAWGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKD 292
A E G + K+ ALK +G D V+DT + ADLTI EEA E + R K
Sbjct: 182 VALSEAFGYKEGTVTTGKMVSALKALGFDLVYDTNYGADLTICEEAGELVNRLRDPNAK- 240
Query: 293 KPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAI 352
PMFTSCCP WV +++ P + +LSS +SP M A++K+Y + + K ED+ + +I
Sbjct: 241 FPMFTSCCPAWVNYVEQSAPDFIPNLSSCRSPQGMLSALIKNYLPKLLDVKQEDVLNFSI 300
Query: 353 MPCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDAS 412
MPC AKK E++ + + D VLT RE V M+K ++I L +T+ D +F S
Sbjct: 301 MPCTAKKDEVERPELRTKSGPKETDMVLTVRELVEMIKLSNIDFNNLPDTQFDNIFGFGS 360
Query: 413 GAGIIFGAT 421
GAG IF AT
Sbjct: 361 GAGQIFAAT 369
>gi|77921071|gb|ABB05314.1| Fe-hydrogenase [uncultured bacterium]
Length = 221
Score = 225 bits (573), Expect = 8e-57, Method: Composition-based stats.
Identities = 115/225 (51%), Positives = 144/225 (64%), Gaps = 4/225 (1%)
Query: 277 EAYEFIERFSKGELKDKPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYF 336
E E + R E K PMFTSCCPGWVR+ KS + V LS++KSP QMFGA+ KSY+
Sbjct: 1 EGSELLARLKNPEGKKFPMFTSCCPGWVRYCKSHHAGFVDQLSTSKSPGQMFGAIAKSYY 60
Query: 337 AEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILP 396
AE +G P I+ V IMPC+AKKSE+ + D+D LTTRE RM+++AH+
Sbjct: 61 AELLGVDPHRIYCVEIMPCLAKKSEVAIPAMNDACGDPDVDVALTTREVDRMIRAAHVDV 120
Query: 397 ETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEE 456
+L+E D A+GAG+IFGATGGVMEAALR+AY+ G NC DAFK VR
Sbjct: 121 VSLEEEAFDAPLGTATGAGVIFGATGGVMEAALRSAYFLATGTNCDADAFKAVRGL---- 176
Query: 457 SGIIEASFTLKENNLRIAVTSGLANTRRLIDSIEAGEKHYDFVEI 501
G EA+F L LR+AV SGLAN RL+ ++E GE YDFVE+
Sbjct: 177 DGWKEATFDLAGTPLRVAVASGLANANRLLTALENGEVEYDFVEV 221
>gi|19547859|gb|AAK26191.1| iron hydrogenase HDGL1 [Trichomonas vaginalis]
Length = 369
Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats.
Identities = 127/365 (34%), Positives = 194/365 (53%), Gaps = 2/365 (0%)
Query: 58 LITACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLN 117
L AC +V +G+ + T S V+ ++ +L HD C+ CV + C + + +
Sbjct: 6 LAPACVTTVWDGLKIDTKSKMVKESVENNLKELLDCHDETCSSCVANHRCQFRDMNVAYS 65
Query: 118 IQDVLYEEQLEDQPWDKNFPLIRDSKKCIKCMRCIQVCDKIQSLNIWELEGTGARTTINV 177
I+ EE E+ + + D+ KC+ C RCI+ C+++ + I
Sbjct: 66 IKAETKEECSEEGIDESTNSIRLDTSKCVLCGRCIRACEEVAGQSAIIFGNRAKHMRIQP 125
Query: 178 SGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANP-DKVVVVQVAPAIRTAWG 236
+ +T+ D C CGQC +CPVGA+ E+ ++ ++N K+ V+QVAPA+R A
Sbjct: 126 TFGQTLQDTSCIKCGQCTLYCPVGAITEKSQVKQALDILSNKGKKISVIQVAPAVRVALS 185
Query: 237 EHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDKPMF 296
E G + K+ ALK +G DYV+DT +SADLTI+EEA E ++R K PMF
Sbjct: 186 EAFGYKEGSVTTGKMVSALKALGFDYVYDTNYSADLTIVEEAGELVQRL-KNPNAVFPMF 244
Query: 297 TSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCV 356
TSCCP WV +++ P + +LSS +SP M +++K+Y + + ED+ + +IMPC
Sbjct: 245 TSCCPAWVNYVEQSAPDFIPNLSSCRSPQGMLSSLVKNYLPKVLNIPVEDVLNFSIMPCT 304
Query: 357 AKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGI 416
AKK EI+ + + D VLT RE V M+K + I L +T D +F SGAG
Sbjct: 305 AKKDEIERPELRTKDGHKETDMVLTVRELVEMIKLSGIDFNNLPDTPFDSIFGFGSGAGQ 364
Query: 417 IFGAT 421
IF AT
Sbjct: 365 IFAAT 369
>gi|77921069|gb|ABB05313.1| Fe-hydrogenase [uncultured bacterium]
gi|77921107|gb|ABB05332.1| Fe-hydrogenase [uncultured bacterium]
gi|83282954|gb|ABC01038.1| Fe-hydrogenase [uncultured bacterium]
gi|83282980|gb|ABC01051.1| Fe-hydrogenase [uncultured bacterium]
gi|83282996|gb|ABC01059.1| Fe-hydrogenase [uncultured bacterium]
Length = 221
Score = 222 bits (565), Expect = 7e-56, Method: Composition-based stats.
Identities = 114/225 (50%), Positives = 143/225 (63%), Gaps = 4/225 (1%)
Query: 277 EAYEFIERFSKGELKDKPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYF 336
E E + R E K PMFTSCCPGWVR+ K+ + V LS++KSP QMFGA+ KSY+
Sbjct: 1 EGSELLARLKNPEGKKFPMFTSCCPGWVRYCKAHHAGFVDQLSTSKSPGQMFGAIAKSYY 60
Query: 337 AEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILP 396
AE +G P I+ V IMPC+AKKSE+ + D+D LTTRE RM+++AH+
Sbjct: 61 AELLGVDPHRIYCVEIMPCLAKKSEVAIPAMNDACGDPDVDVALTTREVDRMIRAAHVDV 120
Query: 397 ETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEE 456
+L+E D A+GAG+IFGATGGVMEAALR+AYY G C DAFK VR
Sbjct: 121 VSLEEEAFDAPLGTATGAGVIFGATGGVMEAALRSAYYFATGTPCDADAFKAVRGL---- 176
Query: 457 SGIIEASFTLKENNLRIAVTSGLANTRRLIDSIEAGEKHYDFVEI 501
G EA+F L LR+AV SGLAN RL+ ++E GE YDFVE+
Sbjct: 177 DGWKEATFDLAGTPLRVAVASGLANANRLLTALENGEVEYDFVEV 221
>gi|77921085|gb|ABB05321.1| Fe-hydrogenase [uncultured bacterium]
Length = 221
Score = 222 bits (565), Expect = 7e-56, Method: Composition-based stats.
Identities = 114/225 (50%), Positives = 143/225 (63%), Gaps = 4/225 (1%)
Query: 277 EAYEFIERFSKGELKDKPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYF 336
E E + R E K PMFTSCCPGWVR+ K+ + V LS++KSP QMFGA+ KSY+
Sbjct: 1 EGSELLARLKNPEGKKFPMFTSCCPGWVRYCKAHHASFVDQLSTSKSPGQMFGAIAKSYY 60
Query: 337 AEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILP 396
AE +G P I+ V IMPC+AKKSE+ + D+D LTTRE RM+++AH+
Sbjct: 61 AELLGVDPHRIYCVEIMPCLAKKSEVAIPAMNDACGDPDVDVALTTREVDRMIRAAHVDV 120
Query: 397 ETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEE 456
+L+E D A+GAG+IFGATGGVMEAALR+AYY G C DAFK VR
Sbjct: 121 VSLEEEAFDAPLGTATGAGVIFGATGGVMEAALRSAYYFATGTPCDADAFKAVRGL---- 176
Query: 457 SGIIEASFTLKENNLRIAVTSGLANTRRLIDSIEAGEKHYDFVEI 501
G EA+F L LR+AV SGLAN RL+ ++E GE YDFVE+
Sbjct: 177 DGWKEATFDLAGTPLRVAVASGLANANRLLTALENGEVEYDFVEV 221
>gi|77921093|gb|ABB05325.1| Fe-hydrogenase [uncultured bacterium]
Length = 221
Score = 222 bits (565), Expect = 7e-56, Method: Composition-based stats.
Identities = 114/225 (50%), Positives = 143/225 (63%), Gaps = 4/225 (1%)
Query: 277 EAYEFIERFSKGELKDKPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYF 336
E E + R E K PMFTSCCPGWVR+ K+ + V LS++KSP QMFGA+ KSY+
Sbjct: 1 EGNELLARLKNPEGKKFPMFTSCCPGWVRYCKAHHAGFVDQLSTSKSPGQMFGAIAKSYY 60
Query: 337 AEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILP 396
AE +G P I+ V IMPC+AKKSE+ + D+D LTTRE RM+++AH+
Sbjct: 61 AELLGVDPHRIYCVEIMPCLAKKSEVAIPAMNDACGDPDVDVALTTREVDRMIRAAHVDV 120
Query: 397 ETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHSSQEE 456
+L+E D A+GAG+IFGATGGVMEAALR+AYY G C DAFK VR
Sbjct: 121 VSLEEEAFDAPLGTATGAGVIFGATGGVMEAALRSAYYFATGTPCDADAFKAVRGL---- 176
Query: 457 SGIIEASFTLKENNLRIAVTSGLANTRRLIDSIEAGEKHYDFVEI 501
G EA+F L LR+AV SGLAN RL+ ++E GE YDFVE+
Sbjct: 177 DGWKEATFDLAGTPLRVAVASGLANANRLLTALENGEVEYDFVEV 221
>gi|19548182|gb|AAL90460.1|AF446077_1 [Fe]-hydrogenase [Trichomonas gallinae]
Length = 369
Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats.
Identities = 133/373 (35%), Positives = 198/373 (53%), Gaps = 18/373 (4%)
Query: 58 LITACNNSVEEGMVVYTNSPKVRIDRRRTVQMILSQHDCKCAICVRSGNCTLQTLANDLN 117
L AC +V +G+ + T S VR ++ +L HD C+ CV + C + D+N
Sbjct: 6 LSPACVTTVWDGLRIDTKSKVVRDSVENNLKELLDCHDETCSSCVANHRCQFR----DMN 61
Query: 118 IQDVLYEEQLE---DQPWDKNFPLIR-DSKKCIKCMRCIQVCDKIQSLNIWELEGTGART 173
+ + + E ++ D++ IR D+ KC+ C RCI+ C+++ +
Sbjct: 62 VAYSVKADTKEICSEEGIDESTHAIRLDTSKCVLCGRCIRACEEVAGTSAIIFGNRAKHM 121
Query: 174 TINVSGSRTIADADCSLCGQCITHCPVGALRERDDTEKFWRAVANP-DKVVVVQVAPAIR 232
I + T+ + C CGQC +CPVGA+ E+ ++ +AN KV VVQVAPA+R
Sbjct: 122 RIQPTFGGTLQETACIKCGQCTLYCPVGAITEKSQVKEALDILANKGKKVTVVQVAPAVR 181
Query: 233 TAWGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKD 292
A E G + K+ ALK +G D V+DT + ADLTI EEA E + R LKD
Sbjct: 182 VALSEAFGYKEGTVTTGKMVSALKALGFDLVYDTNYGADLTICEEAGELVNR-----LKD 236
Query: 293 K----PMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIF 348
PMFTSCCP WV +++ P + +LSS +SP M +++K+Y + +G K E++
Sbjct: 237 PKAVFPMFTSCCPAWVNYVEQSAPDFIPNLSSCRSPQGMLSSLIKNYLPKLLGIKQEEVM 296
Query: 349 SVAIMPCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILPETLKETEPDKLF 408
+ +IMPC AKK EI+ + + D VLT RE V M+K ++I L +T D +F
Sbjct: 297 NFSIMPCTAKKDEIERPELQTKTGLKETDMVLTVRELVEMIKLSNIDFNNLPDTPFDNIF 356
Query: 409 HDASGAGIIFGAT 421
SGAG IF AT
Sbjct: 357 GFGSGAGQIFAAT 369
>gi|12581498|gb|AAG59621.1|AF276706_1 Fe-hydrogenase [Scenedesmus obliquus]
Length = 403
Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats.
Identities = 151/387 (39%), Positives = 209/387 (54%), Gaps = 47/387 (12%)
Query: 221 KVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYE 280
KV++ Q+APA+R E +GL+ D +V ++ L+ +G DYVFDT F ADLTIMEE E
Sbjct: 17 KVMIAQIAPAVR-GIAETMGLNPGDVTVGQMVTGLRMLGFDYVFDTLFGADLTIMEEGTE 75
Query: 281 FIERFSK------GELKDKPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKS 334
+ R + + PMFTSCCPGWV ++ P L+ +LSS KSP M GAV+K+
Sbjct: 76 LLHRLQDHLEQHPNKEEPLPMFTSCCPGWVAMVEKSNPELIPYLSSCKSPQMMLGAVIKN 135
Query: 335 YFAEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEY-AG-HDMDCVLTTREFVRMLKSA 392
YFA + G KPEDI +V++MPCV K E + + AG D+D V+TT E ++
Sbjct: 136 YFAAEAGAKPEDICNVSVMPCVRKSGEAEPRSGSTHHRAGRRDVDHVMTTAELGKIFVER 195
Query: 393 HILPETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPDAFKVVRHS 452
I L+E+ D + SG G++FG TGGVMEAALRT Y + + P + +
Sbjct: 196 GIKLNELQESPFDNPVGEGSGGGLLFGTTGGVMEAALRTVYEVVTAEALGPQRSSLTTST 255
Query: 453 -------------------------SQEESGIIEASFTLKENNLRIAVTSGLANTRRLID 487
+Q ESGI L IAV +GL N ++LI
Sbjct: 256 AWTPAQRASPRPSPQAPTAPSRPLQAQTESGI----------TLNIAVANGLGNAKKLIK 305
Query: 488 SIEAGEKHYDFVEIMACPGGCVGGGGQPIHESGELAVKRGSNLYFIDKNSKVRYSHENEC 547
+ AGE YDF E+MA G GGG + ++ KR + +Y +D+ + +R + EN
Sbjct: 306 QLAAGESKYDFTEVMA-CPGGCIGGGGQPQRNKQILQKRQAAMYDLDERAVIRRT-ENPL 363
Query: 548 IKALYNDFFEKPNSHKAHSLLHTDHFI 574
I ALY F +PN HKAH LLHT H++
Sbjct: 364 IGALYEKFLGEPNGHKAHELLHT-HYV 389
>gi|77921075|gb|ABB05316.1| Fe-hydrogenase [uncultured bacterium]
gi|83282956|gb|ABC01039.1| Fe-hydrogenase [uncultured bacterium]
Length = 221
Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats.
Identities = 113/225 (50%), Positives = 142/225 (63%), Gaps = 4/225 (1%)
Query: 277 EAYEFIERFSKGELKDKPMFTSCCPGWVRFIKSQYPHLVSHLSSAKSPMQMFGAVMKSYF 336
E E +ER K PMFTSCCPGWVR+ K+ + V LS++KSP QMFGA+ KSY+
Sbjct: 1 EGSELLERLKVPGGKKFPMFTSCCPGWVRYCKAHHSGFVDQLSTSKSPGQMFGAIAKSYY 60
Query: 337 AEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAGHDMDCVLTTREFVRMLKSAHILP 396
AE +G P I+ V IMPC+AKKSE+ + D+D LTTRE RM+++AH+
Sbjct: 61 AELLGVDPHRIYCVEIMPCLAKKSEVAIPAMNDACGDPDVDVALTTREVDRMIRAAHVDV 120
Query: 397 ETLKETEPDKLFHDASGAGIIFGATGGVMEAALRTAYYAIMGKNCPPD